Wall clock time and date at job start Tue Mar 31 2020 01:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53003 * 109.47312 * 120.00042 * 2 1 3 5 5 C 1.52997 * 109.47231 * 185.00170 * 4 2 1 6 6 N 1.46501 * 109.47353 * 180.02562 * 5 4 2 7 7 C 1.36935 * 120.00358 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99661 * 359.97438 * 7 6 5 9 9 C 1.38806 * 119.99999 * 179.97438 * 7 6 5 10 10 N 1.31623 * 119.99990 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00086 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46814 * 90.00379 * 11 9 7 13 13 H 1.48504 * 109.47133 * 210.00030 * 11 9 7 14 14 H 1.48496 * 109.47102 * 330.00353 * 11 9 7 15 15 N 1.46503 * 109.47299 * 240.00153 * 2 1 3 16 16 C 1.34769 * 120.00207 * 84.99975 * 15 2 1 17 17 O 1.21283 * 120.00415 * 359.97438 * 16 15 2 18 18 C 1.50698 * 120.00252 * 180.02562 * 16 15 2 19 19 C 1.50697 * 109.47436 * 180.02562 * 18 16 15 20 20 C 1.34669 * 126.59585 * 85.16051 * 19 18 16 21 21 N 1.34133 * 108.02235 * 180.28483 * 20 19 18 22 22 C 1.30502 * 109.25197 * 359.73051 * 21 20 19 23 23 N 1.35041 * 108.70384 * 0.02562 * 22 21 20 24 24 C 1.46499 * 126.39764 * 180.02562 * 23 22 21 25 25 H 1.09008 * 109.46839 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47149 * 299.99772 * 1 2 3 27 27 H 1.09002 * 109.47103 * 60.00208 * 1 2 3 28 28 H 1.08998 * 109.46773 * 305.00282 * 4 2 1 29 29 H 1.09002 * 109.47253 * 65.00021 * 4 2 1 30 30 H 1.09007 * 109.47197 * 299.99511 * 5 4 2 31 31 H 1.09002 * 109.47124 * 59.99772 * 5 4 2 32 32 H 0.97000 * 119.99482 * 0.02562 * 6 5 4 33 33 H 0.97001 * 120.00136 * 179.97438 * 10 9 7 34 34 H 0.97003 * 119.99968 * 264.99964 * 15 2 1 35 35 H 1.08994 * 109.47477 * 59.99406 * 18 16 15 36 36 H 1.09007 * 109.47124 * 299.99518 * 18 16 15 37 37 H 1.07993 * 125.98713 * 0.05405 * 20 19 18 38 38 H 1.08005 * 125.64657 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47391 * 90.01916 * 24 23 22 40 40 H 1.09001 * 109.46813 * 330.01972 * 24 23 22 41 41 H 1.09004 * 109.47041 * 210.02099 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3953 -1.3404 2.7794 8 1 6.0937 -0.8595 2.1105 9 6 5.8580 -1.9948 3.9128 10 7 7.1479 -2.0289 4.1725 11 14 4.6499 -2.8257 5.0701 12 1 4.4449 -4.2335 4.6442 13 1 5.1917 -2.8008 6.4526 14 1 3.3529 -2.1036 5.0337 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0183 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6489 -0.7288 -3.5877 19 6 2.7004 0.2397 -4.7411 20 6 3.7087 1.0814 -5.0383 21 7 3.3618 1.7743 -6.1332 22 6 2.1792 1.3898 -6.5291 23 7 1.7321 0.4311 -5.6896 24 6 0.4485 -0.2698 -5.7753 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7716 1.2056 30 1 3.9995 -1.0728 0.4260 31 1 3.8532 0.4370 1.3573 32 1 3.4260 -1.7365 3.1101 33 1 7.4712 -2.4859 4.9647 34 1 2.2491 -1.6318 -1.1526 35 1 1.9761 -1.5506 -3.8326 36 1 3.6481 -1.1213 -3.3986 37 1 4.6329 1.1835 -4.4891 38 1 1.6464 1.7746 -7.3861 39 1 0.5629 -1.1639 -6.3882 40 1 -0.2948 0.3874 -6.2266 41 1 0.1224 -0.5543 -4.7749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273123321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:18 Heat of formation + Delta-G solvation = 32.172975 kcal Electronic energy + Delta-G solvation = -21506.498855 eV Core-core repulsion = 18229.831000 eV Total energy + Delta-G solvation = -3276.667855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.24041 -39.77433 -36.69103 -34.52559 -34.23902 -32.70472 -31.75489 -30.75153 -28.33124 -27.33508 -27.06782 -24.00374 -21.95242 -21.56986 -21.23483 -20.59568 -19.90361 -17.72197 -17.25031 -17.21328 -16.17720 -15.73850 -15.47681 -14.66507 -14.40789 -14.31229 -14.00658 -13.75885 -13.66871 -13.39083 -13.20438 -13.08868 -12.89237 -12.76294 -12.63966 -12.18281 -12.07126 -11.56568 -11.25638 -10.94120 -10.76729 -10.55097 -10.17074 -10.08026 -9.95956 -9.68250 -9.61374 -9.10338 -8.90726 -8.45962 -7.26049 -5.78598 -3.14755 1.82174 2.54234 2.61159 3.01632 3.29452 3.34585 3.36686 3.42916 4.32001 4.38033 4.56582 4.56893 4.65313 4.73864 4.77303 4.87061 4.97567 5.11920 5.13546 5.21055 5.34889 5.46862 5.57559 5.58403 5.64987 5.75079 5.88820 5.90297 6.10302 6.15798 6.16976 6.45035 6.62632 6.67556 6.72790 7.02646 7.46657 7.96452 7.97639 8.19018 8.40258 9.19100 9.91213 10.10742 11.39833 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.003222 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.908388 B = 8688.920521 C = 9363.965096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.090 0.910 4 C -0.139 4.139 5 C 0.158 3.842 6 N -0.757 5.757 7 C -0.245 4.245 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.720 5.720 16 C 0.512 3.488 17 O -0.531 6.531 18 C -0.067 4.067 19 C -0.007 4.007 20 C -0.007 4.007 21 N -0.493 5.493 22 C 0.180 3.820 23 N -0.457 5.457 24 C 0.072 3.928 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.360 0.640 33 H 0.260 0.740 34 H 0.402 0.598 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.169 0.831 38 H 0.203 0.797 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.706 -0.054 -19.507 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.177 4.177 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.375 4.375 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.373 5.373 16 C 0.298 3.702 17 O -0.407 6.407 18 C -0.108 4.108 19 C -0.121 4.121 20 C -0.155 4.155 21 N -0.211 5.211 22 C -0.102 4.102 23 N -0.140 5.140 24 C -0.071 4.071 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.236 0.764 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.186 0.814 38 H 0.220 0.780 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.323 1.381 -19.951 26.458 hybrid contribution -1.215 -1.745 1.388 2.539 sum -18.539 -0.365 -18.563 26.237 Atomic orbital electron populations 1.22155 0.95540 1.01844 1.02294 1.20942 0.93438 0.97855 0.83658 0.89198 1.22115 0.98151 1.00746 0.96703 1.20614 0.90078 0.96042 0.90190 1.42721 1.05309 1.66229 1.26049 1.19068 0.82172 1.29379 1.06907 0.89244 1.24692 0.95615 1.00723 0.98196 1.69707 1.11741 1.48164 1.28579 0.86521 0.80920 0.79725 0.81175 1.21110 1.21714 1.20365 1.46105 1.67368 1.14220 1.09572 1.20446 0.77919 0.87485 0.84387 1.90738 1.49294 1.15726 1.84905 1.20049 1.05019 0.96322 0.89403 1.20402 0.91771 1.04949 0.94981 1.22044 1.00164 0.96545 0.96722 1.70276 1.11996 1.25668 1.13138 1.24868 0.94005 0.92668 0.98682 1.45188 1.15278 1.31073 1.22498 1.22009 0.83173 0.97801 1.04079 0.92608 0.91563 0.92516 0.90331 0.91423 0.95475 0.95563 0.80735 0.93030 0.76372 0.88460 0.86189 0.81407 0.78013 0.90481 0.89374 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.29 16 2 C 0.15 1.76 2.57 -67.93 -0.17 1.59 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 4 C -0.14 -1.89 4.87 -26.73 -0.13 -2.02 16 5 C 0.16 2.93 6.15 -4.04 -0.02 2.90 16 6 N -0.76 -17.70 5.41 -59.91 -0.32 -18.02 16 7 C -0.25 -6.96 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -29.38 13.97 55.49 0.78 -28.61 16 11 Si 0.89 21.84 27.73 -169.99 -4.71 17.12 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 15 N -0.72 -7.68 4.53 -53.81 -0.24 -7.92 16 16 C 0.51 6.08 7.79 -10.99 -0.09 5.99 16 17 O -0.53 -8.58 15.70 5.56 0.09 -8.49 16 18 C -0.07 -0.58 5.88 -29.04 -0.17 -0.76 16 19 C -0.01 -0.07 5.45 -81.60 -0.44 -0.52 16 20 C -0.01 -0.09 11.79 -17.81 -0.21 -0.30 16 21 N -0.49 -6.85 11.25 -14.66 -0.16 -7.02 16 22 C 0.18 1.88 12.56 -90.37 -1.14 0.74 16 23 N -0.46 -4.37 3.15 -121.36 -0.38 -4.75 16 24 C 0.07 0.37 10.83 59.85 0.65 1.02 16 25 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.36 8.11 5.53 -40.82 -0.23 7.89 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.40 3.46 8.60 -40.82 -0.35 3.11 16 35 H 0.10 0.57 7.63 -51.93 -0.40 0.17 16 36 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.17 2.08 8.06 -52.49 -0.42 1.65 16 38 H 0.20 1.28 8.06 -52.48 -0.42 0.85 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.43 7.67 -51.93 -0.40 0.03 16 LS Contribution 346.35 15.07 5.22 5.22 Total: -1.00 -37.55 346.35 -7.79 -45.33 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.41 Total: 6.88 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.63 Total: 0.25 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -0.34 Total: -66.32 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.55 -7.79 -45.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273123321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.505 kcal (2) G-P(sol) polarization free energy of solvation -37.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds