Wall clock time and date at job start Tue Mar 31 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47039 * 2 1 4 4 C 1.52999 * 109.46703 * 240.00733 * 2 1 3 5 5 C 1.53008 * 109.47227 * 174.99761 * 4 2 1 6 6 N 1.46500 * 109.47124 * 180.02562 * 5 4 2 7 7 C 1.36937 * 119.99856 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99907 * 359.97438 * 7 6 5 9 9 C 1.38815 * 119.99854 * 180.02562 * 7 6 5 10 10 N 1.31614 * 120.00071 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99702 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47292 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47154 * 119.99593 * 11 9 7 14 14 H 1.48498 * 109.47177 * 239.99537 * 11 9 7 15 15 N 1.46491 * 109.47531 * 120.00823 * 2 1 3 16 16 C 1.34774 * 119.99975 * 274.99565 * 15 2 1 17 17 O 1.21286 * 120.00140 * 0.02562 * 16 15 2 18 18 C 1.50702 * 120.00236 * 179.97438 * 16 15 2 19 19 C 1.52996 * 109.47197 * 180.02562 * 18 16 15 20 20 N 1.46501 * 109.47323 * 180.02562 * 19 18 16 21 21 C 1.36890 * 126.39537 * 270.03108 * 20 19 18 22 22 C 1.34669 * 106.81617 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.02026 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25480 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47594 * 59.98844 * 1 2 3 26 26 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46789 * 299.99231 * 1 2 3 28 28 H 1.08998 * 109.47576 * 294.99801 * 4 2 1 29 29 H 1.09004 * 109.47550 * 54.99991 * 4 2 1 30 30 H 1.08994 * 109.46815 * 299.99710 * 5 4 2 31 31 H 1.08994 * 109.46733 * 60.00217 * 5 4 2 32 32 H 0.96999 * 120.00036 * 359.97438 * 6 5 4 33 33 H 0.97004 * 120.00387 * 180.02562 * 10 9 7 34 34 H 0.97000 * 120.00217 * 94.99987 * 15 2 1 35 35 H 1.09006 * 109.47101 * 60.00122 * 18 16 15 36 36 H 1.09002 * 109.47241 * 300.00434 * 18 16 15 37 37 H 1.09002 * 109.47343 * 60.00448 * 19 18 16 38 38 H 1.08998 * 109.47519 * 299.99826 * 19 18 16 39 39 H 1.07996 * 126.59258 * 359.97438 * 21 20 19 40 40 H 1.08002 * 125.99042 * 180.26007 * 22 21 20 41 41 H 1.08006 * 125.64571 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0529 -1.3031 -2.5106 7 6 5.3950 -1.3398 -2.7801 8 1 6.0935 -0.8597 -2.1108 9 6 5.8575 -1.9931 -3.9143 10 7 5.0062 -2.5777 -4.7302 11 14 7.6882 -2.0425 -4.2823 12 1 8.4268 -1.3156 -3.2187 13 1 8.1462 -3.4544 -4.3271 14 1 7.9470 -1.3963 -5.5941 15 7 2.0184 -0.6907 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8584 1.1582 2.4117 18 6 2.6491 -0.7292 3.5875 19 6 2.7002 0.2537 4.7589 20 7 3.1887 -0.4370 5.9550 21 6 2.4247 -1.0869 6.8865 22 6 3.2716 -1.5762 7.8122 23 7 4.5187 -1.2339 7.4559 24 6 4.4766 -0.5507 6.3449 25 1 -0.3634 0.5140 -0.8898 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.7516 -1.7714 -1.2059 29 1 1.6052 -0.2615 -2.1371 30 1 3.8531 0.4371 -1.3576 31 1 3.9994 -1.0728 -0.4264 32 1 3.4256 -1.7346 -3.1115 33 1 5.3294 -3.0345 -5.5225 34 1 2.2491 -1.6319 1.1523 35 1 3.6483 -1.1217 3.3983 36 1 1.9762 -1.5510 3.8323 37 1 1.7009 0.6458 4.9481 38 1 3.3729 1.0758 4.5144 39 1 1.3495 -1.1879 6.8804 40 1 2.9955 -2.1477 8.6861 41 1 5.3304 -0.1441 5.8233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320512968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:43 Heat of formation + Delta-G solvation = 24.533956 kcal Electronic energy + Delta-G solvation = -21040.134072 eV Core-core repulsion = 17763.134964 eV Total energy + Delta-G solvation = -3276.999108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.25851 -40.03978 -36.80930 -35.02744 -34.42758 -32.22081 -31.13838 -30.18070 -29.53263 -27.95332 -25.13799 -23.98349 -21.87024 -21.55874 -21.21879 -20.77649 -20.50806 -18.07317 -17.23960 -16.65176 -16.36376 -15.96632 -15.32156 -14.80982 -14.56425 -14.21398 -14.06078 -13.83426 -13.78764 -13.47984 -13.36305 -13.21000 -12.90623 -12.74544 -12.47023 -11.95896 -11.74885 -11.29027 -11.09696 -10.86712 -10.72659 -10.63211 -10.23879 -10.14102 -10.06610 -9.81142 -9.75916 -9.16062 -8.92532 -8.76184 -6.98658 -5.82273 -3.11429 1.79794 2.40640 2.43676 2.96828 3.15739 3.39822 3.45762 3.47835 4.28448 4.30433 4.48294 4.51652 4.53788 4.72952 4.87082 4.96303 5.04098 5.15178 5.22197 5.25610 5.36501 5.46792 5.49068 5.63380 5.66072 5.84244 5.92566 6.02055 6.14601 6.18302 6.25373 6.40612 6.49554 6.72244 6.77492 6.91972 7.36652 7.65179 7.85208 8.04246 8.36625 9.47907 10.04942 10.39362 11.40653 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.003139 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.704700 B = 8917.399375 C =10323.754229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.136 4.136 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.715 5.715 16 C 0.520 3.480 17 O -0.546 6.546 18 C -0.159 4.159 19 C 0.122 3.878 20 N -0.459 5.459 21 C -0.058 4.058 22 C -0.032 4.032 23 N -0.498 5.498 24 C 0.183 3.817 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.403 0.597 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 3.303 19.322 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.174 4.174 5 C 0.027 3.973 6 N -0.379 5.379 7 C -0.372 4.372 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.366 5.366 16 C 0.305 3.695 17 O -0.424 6.424 18 C -0.200 4.200 19 C -0.001 4.001 20 N -0.142 5.142 21 C -0.191 4.191 22 C -0.180 4.180 23 N -0.216 5.216 24 C -0.099 4.099 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.238 0.762 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.190 0.810 40 H 0.185 0.815 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.585 4.057 19.671 22.255 hybrid contribution 0.154 -0.586 -1.073 1.232 sum -9.431 3.470 18.598 21.140 Atomic orbital electron populations 1.22159 0.95350 1.02036 1.02361 1.21014 0.93608 0.97727 0.83684 0.89251 1.22077 0.98111 1.00816 0.96379 1.20623 0.90301 0.95624 0.90754 1.42373 1.05428 1.64995 1.25054 1.19267 0.83797 1.28600 1.05522 0.91186 1.24753 0.97801 1.00830 0.97611 1.69664 1.32766 1.40710 1.15072 0.86113 0.84956 0.77271 0.77840 1.20521 1.21793 1.21794 1.46129 1.66492 1.14365 1.09618 1.20215 0.77650 0.87182 0.84466 1.90723 1.50650 1.15844 1.85205 1.22010 1.04813 0.99970 0.93233 1.21602 1.03021 0.94126 0.81390 1.45664 1.07832 1.40981 1.19703 1.22768 0.98581 1.04206 0.93510 1.22322 0.88644 1.05589 1.01453 1.70313 1.24011 1.15073 1.12171 1.25093 0.86838 1.02550 0.95415 0.91419 0.92503 0.92459 0.91331 0.90150 0.96450 0.96498 0.78311 0.93508 0.76192 0.87780 0.88163 0.88139 0.87757 0.80996 0.81473 0.77861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 2 C 0.14 1.75 2.57 -67.94 -0.17 1.57 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 C -0.14 -1.94 4.87 -26.73 -0.13 -2.07 16 5 C 0.15 2.94 6.15 -4.04 -0.02 2.92 16 6 N -0.73 -18.18 5.60 -59.91 -0.34 -18.51 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 11 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 N -0.72 -7.54 4.53 -53.81 -0.24 -7.79 16 16 C 0.52 5.49 7.79 -10.99 -0.09 5.40 16 17 O -0.55 -7.54 15.65 5.55 0.09 -7.46 16 18 C -0.16 -1.17 6.02 -27.88 -0.17 -1.33 16 19 C 0.12 0.89 5.44 -4.04 -0.02 0.87 16 20 N -0.46 -3.88 2.75 -118.58 -0.33 -4.20 16 21 C -0.06 -0.48 11.58 -16.56 -0.19 -0.67 16 22 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 23 N -0.50 -5.98 11.25 -14.66 -0.16 -6.14 16 24 C 0.18 1.78 12.56 -90.38 -1.14 0.64 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.32 7.75 -51.93 -0.40 -0.08 16 32 H 0.38 9.92 7.67 -40.82 -0.31 9.61 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.10 0.78 8.10 -51.93 -0.42 0.35 16 39 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.20 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -34.42 350.79 -8.53 -42.95 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.50 Total: 7.74 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.04 Total: -1.86 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.35 Total: -63.87 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.42 -8.53 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320512968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.487 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds