Wall clock time and date at job start Tue Mar 31 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47039 * 2 1 4 4 C 1.52999 * 109.46703 * 240.00733 * 2 1 3 5 5 C 1.53008 * 109.47227 * 174.99761 * 4 2 1 6 6 N 1.46500 * 109.47124 * 180.02562 * 5 4 2 7 7 C 1.36937 * 119.99856 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99907 * 359.97438 * 7 6 5 9 9 C 1.38815 * 119.99854 * 180.02562 * 7 6 5 10 10 N 1.31614 * 120.00071 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99702 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47292 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47154 * 119.99593 * 11 9 7 14 14 H 1.48498 * 109.47177 * 239.99537 * 11 9 7 15 15 N 1.46491 * 109.47531 * 120.00823 * 2 1 3 16 16 C 1.34774 * 119.99975 * 274.99565 * 15 2 1 17 17 O 1.21286 * 120.00140 * 0.02562 * 16 15 2 18 18 C 1.50702 * 120.00236 * 179.97438 * 16 15 2 19 19 C 1.52996 * 109.47197 * 180.02562 * 18 16 15 20 20 N 1.46501 * 109.47323 * 180.02562 * 19 18 16 21 21 C 1.36890 * 126.39537 * 270.03108 * 20 19 18 22 22 C 1.34669 * 106.81617 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.02026 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25480 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47594 * 59.98844 * 1 2 3 26 26 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46789 * 299.99231 * 1 2 3 28 28 H 1.08998 * 109.47576 * 294.99801 * 4 2 1 29 29 H 1.09004 * 109.47550 * 54.99991 * 4 2 1 30 30 H 1.08994 * 109.46815 * 299.99710 * 5 4 2 31 31 H 1.08994 * 109.46733 * 60.00217 * 5 4 2 32 32 H 0.96999 * 120.00036 * 359.97438 * 6 5 4 33 33 H 0.97004 * 120.00387 * 180.02562 * 10 9 7 34 34 H 0.97000 * 120.00217 * 94.99987 * 15 2 1 35 35 H 1.09006 * 109.47101 * 60.00122 * 18 16 15 36 36 H 1.09002 * 109.47241 * 300.00434 * 18 16 15 37 37 H 1.09002 * 109.47343 * 60.00448 * 19 18 16 38 38 H 1.08998 * 109.47519 * 299.99826 * 19 18 16 39 39 H 1.07996 * 126.59258 * 359.97438 * 21 20 19 40 40 H 1.08002 * 125.99042 * 180.26007 * 22 21 20 41 41 H 1.08006 * 125.64571 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0529 -1.3031 -2.5106 7 6 5.3950 -1.3398 -2.7801 8 1 6.0935 -0.8597 -2.1108 9 6 5.8575 -1.9931 -3.9143 10 7 5.0062 -2.5777 -4.7302 11 14 7.6882 -2.0425 -4.2823 12 1 8.4268 -1.3156 -3.2187 13 1 8.1462 -3.4544 -4.3271 14 1 7.9470 -1.3963 -5.5941 15 7 2.0184 -0.6907 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8584 1.1582 2.4117 18 6 2.6491 -0.7292 3.5875 19 6 2.7002 0.2537 4.7589 20 7 3.1887 -0.4370 5.9550 21 6 2.4247 -1.0869 6.8865 22 6 3.2716 -1.5762 7.8122 23 7 4.5187 -1.2339 7.4559 24 6 4.4766 -0.5507 6.3449 25 1 -0.3634 0.5140 -0.8898 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.7516 -1.7714 -1.2059 29 1 1.6052 -0.2615 -2.1371 30 1 3.8531 0.4371 -1.3576 31 1 3.9994 -1.0728 -0.4264 32 1 3.4256 -1.7346 -3.1115 33 1 5.3294 -3.0345 -5.5225 34 1 2.2491 -1.6319 1.1523 35 1 3.6483 -1.1217 3.3983 36 1 1.9762 -1.5510 3.8323 37 1 1.7009 0.6458 4.9481 38 1 3.3729 1.0758 4.5144 39 1 1.3495 -1.1879 6.8804 40 1 2.9955 -2.1477 8.6861 41 1 5.3304 -0.1441 5.8233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320512968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:43 Heat of formation + Delta-G solvation = 2.290141 kcal Electronic energy + Delta-G solvation = -21041.098636 eV Core-core repulsion = 17763.134964 eV Total energy + Delta-G solvation = -3277.963672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.93061 -40.93291 -37.97479 -36.17530 -35.66809 -33.65143 -32.47584 -31.04819 -30.21350 -29.40485 -26.06906 -25.56702 -23.30105 -22.24819 -22.21046 -21.66522 -21.34189 -19.24162 -18.72972 -17.48935 -17.33934 -16.77188 -16.60680 -16.07968 -15.55860 -15.32643 -15.18082 -15.13534 -14.87014 -14.58502 -14.35658 -14.21023 -13.93063 -13.51193 -13.40407 -13.09833 -12.92202 -12.87208 -12.39392 -12.35029 -12.23197 -12.00099 -11.92697 -11.64286 -11.06108 -10.96886 -10.91186 -10.56340 -10.08191 -9.42960 -9.02385 -7.98053 -5.26908 1.14290 1.46869 1.47331 1.57333 1.60639 1.74425 2.24715 2.36891 2.54038 3.36167 3.59170 3.66995 3.73252 3.86987 3.91482 4.06048 4.14207 4.17601 4.36363 4.42095 4.45339 4.56613 4.64362 4.66726 4.76689 4.79977 4.82839 4.87722 5.00318 5.22028 5.27205 5.33942 5.36796 5.47434 5.56631 5.85500 6.25018 6.27029 6.53811 7.16495 7.21997 7.31526 8.07134 8.30087 9.25534 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.003139 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.704700 B = 8917.399375 C =10323.754229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.070 0.930 4 C -0.120 4.120 5 C 0.154 3.846 6 N -0.747 5.747 7 C -0.247 4.247 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.972 3.028 12 H -0.267 1.267 13 H -0.291 1.291 14 H -0.293 1.293 15 N -0.713 5.713 16 C 0.520 3.480 17 O -0.580 6.580 18 C -0.147 4.147 19 C 0.126 3.874 20 N -0.456 5.456 21 C -0.050 4.050 22 C -0.059 4.059 23 N -0.539 5.539 24 C 0.172 3.828 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.007 0.993 31 H 0.025 0.975 32 H 0.375 0.625 33 H 0.252 0.748 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.202 0.798 40 H 0.181 0.819 41 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 3.116 20.144 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.028 3.972 6 N -0.390 5.390 7 C -0.378 4.378 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.619 5.619 11 Si 0.801 3.199 12 H -0.192 1.192 13 H -0.218 1.218 14 H -0.220 1.220 15 N -0.365 5.365 16 C 0.307 3.693 17 O -0.460 6.460 18 C -0.187 4.187 19 C 0.003 3.997 20 N -0.139 5.139 21 C -0.183 4.183 22 C -0.206 4.206 23 N -0.258 5.258 24 C -0.110 4.110 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.207 0.793 33 H 0.061 0.939 34 H 0.249 0.751 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.219 0.781 40 H 0.198 0.802 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.060 3.874 20.532 23.190 hybrid contribution 0.267 -0.485 -1.281 1.396 sum -9.793 3.389 19.250 21.862 Atomic orbital electron populations 1.22076 0.93630 1.02903 1.02486 1.20800 0.94798 0.96419 0.83292 0.91146 1.21909 0.94591 1.01734 0.97584 1.20773 0.93486 0.94174 0.88810 1.42589 1.04485 1.65341 1.26560 1.19637 0.85307 1.27598 1.05302 0.90945 1.25551 1.01964 1.01267 0.97840 1.69803 1.34542 1.41970 1.15556 0.85102 0.80190 0.77078 0.77568 1.19177 1.21788 1.22041 1.46102 1.66342 1.14771 1.09246 1.20691 0.76774 0.86760 0.85062 1.90714 1.52147 1.17440 1.85747 1.21930 1.05396 0.99973 0.91425 1.21591 1.03186 0.93921 0.80959 1.45724 1.07535 1.40728 1.19864 1.23227 0.99740 1.02743 0.92555 1.22701 0.88496 1.06676 1.02713 1.70271 1.25470 1.16506 1.13550 1.25490 0.87921 1.02374 0.95216 0.90869 0.91230 0.92783 0.90391 0.90384 0.97511 0.95659 0.79293 0.93900 0.75148 0.87121 0.86203 0.87625 0.87995 0.78101 0.80234 0.76059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.48 71.98 0.68 -2.20 16 2 C 0.15 3.46 2.57 44.99 0.12 3.57 16 3 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 4 C -0.12 -3.28 4.87 30.60 0.15 -3.13 16 5 C 0.15 5.74 6.15 86.38 0.53 6.27 16 6 N -0.75 -36.79 5.60 -343.45 -1.92 -38.72 16 7 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -58.28 13.06 21.65 0.28 -57.99 16 11 Si 0.97 45.54 29.55 68.60 2.03 47.56 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 N -0.71 -13.64 4.53 -442.55 -2.00 -15.65 16 16 C 0.52 10.02 7.79 87.66 0.68 10.71 16 17 O -0.58 -15.33 15.65 -3.05 -0.05 -15.38 16 18 C -0.15 -1.78 6.02 29.85 0.18 -1.60 16 19 C 0.13 1.59 5.44 86.38 0.47 2.06 16 20 N -0.46 -6.85 2.75 -529.07 -1.46 -8.31 16 21 C -0.05 -0.72 11.58 83.08 0.96 0.24 16 22 C -0.06 -1.11 11.87 83.52 0.99 -0.12 16 23 N -0.54 -12.69 11.25 -200.31 -2.25 -14.94 16 24 C 0.17 3.16 12.56 180.27 2.26 5.43 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.03 0.92 7.75 -2.39 -0.02 0.90 16 32 H 0.38 19.48 7.67 -92.71 -0.71 18.76 16 33 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.41 6.51 8.60 -92.71 -0.80 5.71 16 35 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.10 1.36 8.10 -2.39 -0.02 1.34 16 39 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.22 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -73.47 350.79 2.48 -70.99 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.48 Total: 27.68 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 8.34 Total: 4.75 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -7.36 Total: -135.60 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.05 Total: -15.38 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -73.47 2.48 -70.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320512968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.283 kcal (2) G-P(sol) polarization free energy of solvation -73.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds