Wall clock time and date at job start Tue Mar 31 2020 01:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46809 * 2 1 4 4 C 1.53002 * 109.46939 * 119.99637 * 2 1 3 5 5 C 1.53002 * 109.46905 * 185.00138 * 4 2 1 6 6 N 1.46502 * 109.46931 * 179.97438 * 5 4 2 7 7 C 1.36935 * 119.99735 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00453 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99722 * 179.97438 * 7 6 5 10 10 N 1.31613 * 120.00297 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47128 * 60.00183 * 11 9 7 13 13 H 1.48496 * 109.47324 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47068 * 300.00161 * 11 9 7 15 15 N 1.46496 * 109.47271 * 239.99364 * 2 1 3 16 16 C 1.34776 * 119.99846 * 85.00297 * 15 2 1 17 17 O 1.21282 * 119.99940 * 359.97438 * 16 15 2 18 18 C 1.50698 * 120.00035 * 180.02562 * 16 15 2 19 19 C 1.53006 * 109.47184 * 179.97438 * 18 16 15 20 20 N 1.46504 * 109.46883 * 179.97438 * 19 18 16 21 21 C 1.36874 * 126.39943 * 90.00176 * 20 19 18 22 22 C 1.34669 * 106.81918 * 179.97438 * 21 20 19 23 23 N 1.34123 * 108.02125 * 0.02562 * 22 21 20 24 24 C 1.30508 * 109.25485 * 359.72427 * 23 22 21 25 25 H 1.08999 * 109.46994 * 60.00417 * 1 2 3 26 26 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47297 * 300.00575 * 1 2 3 28 28 H 1.09001 * 109.46790 * 305.00010 * 4 2 1 29 29 H 1.08998 * 109.47319 * 65.00234 * 4 2 1 30 30 H 1.08996 * 109.46849 * 299.99632 * 5 4 2 31 31 H 1.08998 * 109.47054 * 59.99933 * 5 4 2 32 32 H 0.97002 * 120.00103 * 359.97438 * 6 5 4 33 33 H 0.96998 * 120.00235 * 179.97438 * 10 9 7 34 34 H 0.96998 * 120.00192 * 265.00345 * 15 2 1 35 35 H 1.09001 * 109.47612 * 59.99945 * 18 16 15 36 36 H 1.09001 * 109.47122 * 299.99777 * 18 16 15 37 37 H 1.09001 * 109.47002 * 299.99404 * 19 18 16 38 38 H 1.08993 * 109.46955 * 59.99842 * 19 18 16 39 39 H 1.08001 * 126.59311 * 359.95764 * 21 20 19 40 40 H 1.08000 * 125.99191 * 179.97438 * 22 21 20 41 41 H 1.07997 * 125.65225 * 180.29380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3032 2.5103 7 6 5.3951 -1.3390 2.7803 8 1 6.0936 -0.8588 2.1110 9 6 5.8576 -1.9923 3.9144 10 7 5.0065 -2.5779 4.7298 11 14 7.6884 -2.0417 4.2824 12 1 8.2007 -0.6560 4.4327 13 1 7.9202 -2.7949 5.5411 14 1 8.3998 -2.7141 3.1657 15 7 2.0184 -0.6907 -1.1960 16 6 2.1471 -0.0184 -2.3570 17 8 1.8583 1.1582 -2.4117 18 6 2.6490 -0.7291 -3.5876 19 6 2.7000 0.2539 -4.7590 20 7 3.1884 -0.4369 -5.9551 21 6 2.4245 -1.0863 -6.8869 22 6 3.2714 -1.5749 -7.8130 23 7 4.5184 -1.2337 -7.4561 24 6 4.4760 -0.5471 -6.3471 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6053 -0.2616 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 3.9994 -1.0728 0.4261 31 1 3.8531 0.4371 1.3573 32 1 3.4257 -1.7341 3.1117 33 1 5.3298 -3.0347 5.5221 34 1 2.2490 -1.6319 -1.1524 35 1 1.9761 -1.5509 -3.8324 36 1 3.6481 -1.1216 -3.3984 37 1 1.7007 0.6460 -4.9481 38 1 3.3726 1.0759 -4.5145 39 1 1.3493 -1.1876 -6.8805 40 1 2.9949 -2.1428 -8.6891 41 1 5.3294 -0.1369 -5.8277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320512969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:46 Heat of formation + Delta-G solvation = 24.720235 kcal Electronic energy + Delta-G solvation = -21039.624580 eV Core-core repulsion = 17762.633550 eV Total energy + Delta-G solvation = -3276.991030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25866 -40.03923 -36.80755 -35.02643 -34.42356 -32.21921 -31.13705 -30.17963 -29.53188 -27.95088 -25.13701 -23.97836 -21.86625 -21.55863 -21.21728 -20.77540 -20.50714 -18.07236 -17.23635 -16.65105 -16.36194 -15.96675 -15.31974 -14.80801 -14.56354 -14.21318 -14.05770 -13.83448 -13.78573 -13.47596 -13.36911 -13.21195 -12.89413 -12.74367 -12.47025 -11.95866 -11.74861 -11.28476 -11.08632 -10.84878 -10.71724 -10.64383 -10.24147 -10.13917 -10.11860 -9.81055 -9.74829 -9.15893 -8.91311 -8.76069 -6.98523 -5.81674 -3.10932 1.79877 2.40614 2.43753 2.96905 3.15861 3.41010 3.45496 3.46445 4.28463 4.30521 4.48481 4.51733 4.54056 4.72966 4.87204 4.96381 5.04205 5.15305 5.22234 5.25737 5.36574 5.46841 5.49264 5.63529 5.66219 5.84417 5.92712 6.02150 6.14820 6.18470 6.25659 6.40738 6.49613 6.72478 6.77725 6.92001 7.36763 7.64425 7.85257 8.04339 8.37242 9.48318 10.05357 10.39834 11.41119 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.003139 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.528519 B = 8918.647521 C =10324.738824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.136 4.136 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.242 4.242 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.285 1.285 15 N -0.715 5.715 16 C 0.520 3.480 17 O -0.546 6.546 18 C -0.159 4.159 19 C 0.121 3.879 20 N -0.459 5.459 21 C -0.058 4.058 22 C -0.032 4.032 23 N -0.498 5.498 24 C 0.183 3.817 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.383 0.617 33 H 0.256 0.744 34 H 0.403 0.597 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.216 3.284 -19.266 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.174 4.174 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.374 4.374 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.366 5.366 16 C 0.305 3.695 17 O -0.424 6.424 18 C -0.200 4.200 19 C -0.001 4.001 20 N -0.142 5.142 21 C -0.191 4.191 22 C -0.180 4.180 23 N -0.216 5.216 24 C -0.099 4.099 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.217 0.783 33 H 0.066 0.934 34 H 0.238 0.762 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.190 0.810 40 H 0.185 0.815 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.585 4.020 -19.597 22.183 hybrid contribution 0.165 -0.571 1.052 1.209 sum -9.420 3.449 -18.545 21.084 Atomic orbital electron populations 1.22160 0.95351 1.02035 1.02360 1.21016 0.93607 0.97727 0.83685 0.89252 1.22075 0.98114 1.00814 0.96376 1.20622 0.90298 0.95615 0.90764 1.42356 1.05400 1.65033 1.25034 1.19178 0.83808 1.28798 1.05576 0.91294 1.24750 0.97787 1.00779 0.97598 1.69642 1.32958 1.40556 1.15096 0.86258 0.84998 0.77542 0.77334 1.21205 1.21618 1.21215 1.46131 1.66494 1.14364 1.09617 1.20214 0.77650 0.87181 0.84467 1.90721 1.50649 1.15846 1.85206 1.22009 1.04814 0.99968 0.93230 1.21603 1.03020 0.94126 0.81392 1.45660 1.07856 1.40979 1.19671 1.22765 0.98577 1.04277 0.93451 1.22319 0.88635 1.05636 1.01418 1.70314 1.24005 1.14993 1.12255 1.25097 0.86844 1.02514 0.95455 0.92459 0.92503 0.91419 0.90152 0.91330 0.96504 0.96465 0.78305 0.93400 0.76191 0.88164 0.87780 0.88142 0.87755 0.80996 0.81474 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 2 C 0.14 1.75 2.57 -67.93 -0.17 1.57 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 C -0.14 -1.95 4.87 -26.73 -0.13 -2.08 16 5 C 0.15 2.95 6.15 -4.04 -0.02 2.92 16 6 N -0.73 -18.19 5.60 -59.91 -0.34 -18.53 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 10 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 11 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 N -0.72 -7.56 4.53 -53.81 -0.24 -7.80 16 16 C 0.52 5.50 7.79 -10.99 -0.09 5.41 16 17 O -0.55 -7.55 15.65 5.56 0.09 -7.47 16 18 C -0.16 -1.17 6.02 -27.88 -0.17 -1.34 16 19 C 0.12 0.89 5.44 -4.04 -0.02 0.87 16 20 N -0.46 -3.88 2.75 -118.57 -0.33 -4.21 16 21 C -0.06 -0.48 11.58 -16.56 -0.19 -0.67 16 22 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 23 N -0.50 -5.98 11.25 -14.67 -0.17 -6.14 16 24 C 0.18 1.78 12.56 -90.37 -1.14 0.64 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.02 0.32 7.75 -51.93 -0.40 -0.08 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.38 9.93 7.67 -40.82 -0.31 9.62 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.40 3.69 8.60 -40.82 -0.35 3.34 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.10 0.78 8.10 -51.93 -0.42 0.35 16 39 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -34.39 350.79 -8.53 -42.92 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.50 Total: 7.85 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.04 Total: -1.88 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.35 Total: -63.92 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.47 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.39 -8.53 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320512969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.644 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds