Wall clock time and date at job start Tue Mar 31 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.50096 * 2 1 4 4 C 1.53097 * 109.50930 * 239.91297 * 2 1 3 5 5 N 1.47017 * 109.25730 * 183.17258 * 4 2 1 6 6 C 1.38579 * 110.99650 * 182.39302 * 5 4 2 7 7 N 1.31216 * 126.47356 * 0.02562 * 6 5 4 8 8 N 1.28534 * 109.86207 * 179.97438 * 7 6 5 9 9 C 1.30302 * 110.04959 * 0.02562 * 8 7 6 10 10 C 1.50692 * 126.34628 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47364 * 90.02143 * 10 9 8 12 12 C 1.50701 * 109.47362 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99920 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99839 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00190 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99637 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47289 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46891 * 120.00621 * 16 14 12 19 19 H 1.48503 * 109.46947 * 240.00102 * 16 14 12 20 20 N 1.36447 * 126.47227 * 180.02562 * 6 5 4 21 21 C 1.46499 * 127.13843 * 359.97438 * 20 6 5 22 22 C 1.47009 * 110.75562 * 58.61425 * 5 4 2 23 23 C 1.53102 * 109.25857 * 301.38593 * 22 5 4 24 24 O 1.43013 * 109.26033 * 56.84371 * 23 22 5 25 25 H 1.09001 * 109.46763 * 180.09424 * 1 2 3 26 26 H 1.09004 * 109.47361 * 300.08926 * 1 2 3 27 27 H 1.08995 * 109.47118 * 60.08715 * 1 2 3 28 28 H 1.08999 * 109.50720 * 63.23577 * 4 2 1 29 29 H 1.08997 * 109.50429 * 303.10475 * 4 2 1 30 30 H 1.08999 * 109.47287 * 210.01873 * 10 9 8 31 31 H 1.09001 * 109.47395 * 330.02143 * 10 9 8 32 32 H 1.09003 * 109.47135 * 300.00247 * 11 10 9 33 33 H 1.09001 * 109.46864 * 59.99675 * 11 10 9 34 34 H 0.96998 * 119.99993 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.47322 * 89.99849 * 21 20 6 36 36 H 1.08997 * 109.47515 * 210.00369 * 21 20 6 37 37 H 1.09006 * 109.47119 * 330.00736 * 21 20 6 38 38 H 1.09008 * 109.50680 * 61.31734 * 22 5 4 39 39 H 1.08993 * 109.50986 * 181.44780 * 22 5 4 40 40 H 1.09007 * 109.50320 * 296.91305 * 23 22 5 41 41 H 1.08993 * 109.54204 * 176.80804 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2486 5 7 3.5094 -0.7870 -1.2052 6 6 4.0144 -1.3888 -2.3468 7 7 3.3176 -1.8541 -3.3566 8 7 4.1081 -2.3444 -4.2436 9 6 5.3459 -2.2225 -3.8552 10 6 6.5681 -2.6737 -4.6124 11 6 7.0578 -1.5384 -5.5137 12 6 8.2797 -1.9899 -6.2714 13 1 8.6680 -2.9870 -6.1251 14 6 8.9014 -1.1303 -7.1522 15 7 8.4283 0.0837 -7.3307 16 14 10.4164 -1.6898 -8.0909 17 1 10.7441 -3.0881 -7.7135 18 1 10.1481 -1.6211 -9.5498 19 1 11.5609 -0.8049 -7.7559 20 7 5.3302 -1.6094 -2.6330 21 6 6.4863 -1.2609 -1.8036 22 6 3.9650 -1.4867 0.0048 23 6 3.4344 -0.7556 1.2409 24 8 2.0085 -0.6760 1.1660 25 1 -0.3633 -1.0277 0.0017 26 1 -0.3634 0.5152 0.8892 27 1 -0.3633 0.5125 -0.8907 28 1 1.7267 -0.1791 -2.1391 29 1 1.6339 -1.7340 -1.2761 30 1 7.3543 -2.9421 -3.9067 31 1 6.3173 -3.5406 -5.2238 32 1 6.2717 -1.2700 -6.2194 33 1 7.3086 -0.6716 -4.9022 34 1 8.8658 0.6886 -7.9500 35 1 6.7194 -2.0916 -1.1376 36 1 7.3445 -1.0566 -2.4438 37 1 6.2552 -0.3749 -1.2120 38 1 3.5883 -2.5096 -0.0027 39 1 5.0546 -1.4997 0.0294 40 1 3.8537 0.2499 1.2769 41 1 3.7218 -1.3022 2.1391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338561237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:21 Heat of formation + Delta-G solvation = 35.815549 kcal Electronic energy + Delta-G solvation = -22227.472440 eV Core-core repulsion = 18950.962538 eV Total energy + Delta-G solvation = -3276.509901 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.67042 -39.92733 -36.21167 -34.94689 -33.81738 -33.06936 -31.73607 -29.64598 -28.10012 -27.36370 -26.05652 -25.28370 -23.30279 -21.87906 -21.30452 -20.51722 -19.91219 -17.37945 -16.70733 -16.54406 -16.22470 -15.99808 -15.56278 -15.28491 -14.79967 -14.55947 -14.41766 -13.61101 -13.29605 -13.09064 -13.00972 -12.71187 -12.55551 -12.30538 -12.18831 -11.78435 -11.51264 -11.37160 -11.12762 -11.03229 -10.94672 -10.73302 -10.44317 -10.18816 -9.93152 -9.89947 -9.74598 -9.40106 -9.22782 -8.43622 -7.98487 -6.07438 -4.11876 2.05959 2.42156 3.20942 3.27153 3.35210 3.38465 3.39593 3.59597 4.37065 4.39625 4.54476 4.60187 4.77156 4.82012 4.88224 5.00896 5.02912 5.11063 5.21202 5.26135 5.28548 5.36568 5.42463 5.46295 5.53803 5.54743 5.68182 5.76348 5.90737 6.09944 6.29376 6.42342 6.53204 6.63981 6.83378 6.87421 7.34513 7.53217 7.66922 7.89971 8.27105 8.94589 9.16297 9.52967 11.03635 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038164 B = 0.003359 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.490226 B = 8333.023186 C = 8545.137622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.088 3.912 3 H 0.070 0.930 4 C 0.043 3.957 5 N -0.448 5.448 6 C 0.332 3.668 7 N -0.321 5.321 8 N -0.294 5.294 9 C 0.214 3.786 10 C -0.031 4.031 11 C 0.031 3.969 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 N -0.482 5.482 21 C 0.074 3.926 22 C 0.011 3.989 23 C 0.069 3.931 24 O -0.381 6.381 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 -0.386 19.288 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.088 0.912 4 C -0.085 4.085 5 N -0.172 5.172 6 C -0.024 4.024 7 N -0.166 5.166 8 N -0.132 5.132 9 C -0.054 4.054 10 C -0.070 4.070 11 C -0.007 4.007 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 N -0.178 5.178 21 C -0.069 4.069 22 C -0.117 4.117 23 C -0.008 4.008 24 O -0.300 6.300 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.314 -0.176 18.523 21.202 hybrid contribution 2.026 -0.318 -0.002 2.051 sum -8.289 -0.495 18.520 20.297 Atomic orbital electron populations 1.21736 0.92103 1.03324 1.02940 1.22269 0.95413 0.95643 0.83649 0.91177 1.22774 0.83382 1.02183 1.00117 1.58858 1.11864 1.48033 0.98409 1.22392 0.82110 1.01569 0.96368 1.74490 1.25596 1.15820 1.00656 1.74004 0.98435 1.19634 1.21139 1.25594 0.98268 0.97549 0.83968 1.20443 0.87694 1.01939 0.96972 1.19084 0.96410 0.91555 0.93671 1.21175 1.11360 0.99633 1.24087 0.92227 1.25022 0.97610 0.94889 0.96777 1.69984 1.40418 1.06294 1.36314 0.86497 0.82670 0.78768 0.79838 1.19623 1.20897 1.21027 1.46049 1.06407 1.47479 1.17825 1.22121 0.87621 1.01578 0.95603 1.23089 1.01927 0.97162 0.89513 1.22629 0.81289 1.00451 0.96467 1.88000 1.20655 1.78429 1.42909 0.91594 0.91368 0.90486 0.88111 0.91961 0.91221 0.89237 0.95581 0.96763 0.92891 0.90741 0.87931 0.89333 0.92621 0.89026 0.91846 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.57 37.16 0.36 -0.76 16 2 C 0.09 0.86 3.42 -26.68 -0.09 0.77 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.04 0.52 4.30 -3.71 -0.02 0.51 16 5 N -0.45 -6.00 4.77 -174.21 -0.83 -6.83 16 6 C 0.33 5.69 7.22 -318.89 -2.30 3.39 16 7 N -0.32 -6.50 11.31 30.31 0.34 -6.16 16 8 N -0.29 -6.48 12.18 32.99 0.40 -6.08 16 9 C 0.21 4.29 7.32 -154.01 -1.13 3.16 16 10 C -0.03 -0.62 5.36 -27.89 -0.15 -0.77 16 11 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 12 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 N -0.48 -8.12 3.21 -121.46 -0.39 -8.51 16 21 C 0.07 0.89 9.19 59.85 0.55 1.44 16 22 C 0.01 0.11 5.46 -3.71 -0.02 0.09 16 23 C 0.07 0.58 7.01 37.21 0.26 0.84 16 24 O -0.38 -3.97 10.47 -35.23 -0.37 -4.34 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.10 1.31 8.05 -51.93 -0.42 0.89 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.24 7.92 -51.93 -0.41 0.83 16 31 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.07 0.69 7.81 -51.93 -0.41 0.29 16 36 H 0.10 1.33 7.88 -51.93 -0.41 0.92 16 37 H 0.09 0.91 7.63 -51.93 -0.40 0.51 16 38 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.09 0.82 5.37 -51.93 -0.28 0.54 16 40 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -33.72 334.74 -9.69 -43.41 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.51 Total: -3.18 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.09 Total: -3.70 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.26 Total: -53.29 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.37 Total: -4.34 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.72 -9.69 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338561237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.225 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds