Wall clock time and date at job start Tue Mar 31 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 C 1.34779 * 119.99805 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00027 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00010 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47345 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47276 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.47282 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99805 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00229 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99849 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99773 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46704 * 90.00319 * 15 13 11 17 17 H 1.48492 * 109.47101 * 210.00210 * 15 13 11 18 18 H 1.48498 * 109.47184 * 330.00203 * 15 13 11 19 19 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 20 20 N 1.30521 * 126.34762 * 300.02651 * 19 2 1 21 21 N 1.28597 * 109.67335 * 179.97438 * 20 19 2 22 22 C 1.30514 * 109.67313 * 359.97438 * 21 20 19 23 23 N 1.35491 * 126.34542 * 119.71121 * 19 2 1 24 24 C 1.46496 * 126.98294 * 0.03889 * 23 19 2 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 29 29 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 30 30 H 0.96995 * 120.00545 * 359.97438 * 5 4 2 31 31 H 1.08998 * 109.47412 * 299.99920 * 8 6 5 32 32 H 1.09000 * 109.46806 * 60.00055 * 8 6 5 33 33 H 1.09010 * 109.47139 * 300.00070 * 9 8 6 34 34 H 1.09001 * 109.47272 * 60.00135 * 9 8 6 35 35 H 1.08998 * 109.47375 * 300.00219 * 10 9 8 36 36 H 1.09001 * 109.47436 * 60.00418 * 10 9 8 37 37 H 0.97001 * 119.99770 * 179.97438 * 14 13 11 38 38 H 1.07997 * 126.34587 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47104 * 89.99493 * 24 23 19 40 40 H 1.08993 * 109.47491 * 209.99966 * 24 23 19 41 41 H 1.09004 * 109.47244 * 329.99923 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9965 -0.4132 3.6658 7 8 2.6266 -1.4433 3.7791 8 6 1.5984 0.3654 4.8932 9 6 2.1083 -0.3559 6.1424 10 6 1.7035 0.4342 7.3885 11 6 2.2062 -0.2760 8.6189 12 1 2.7596 -1.1984 8.5218 13 6 1.9599 0.2519 9.8687 14 7 2.3991 -0.3676 10.9423 15 14 1.0034 1.8477 10.0365 16 1 -0.4462 1.5461 10.1512 17 1 1.4563 2.5706 11.2520 18 1 1.2398 2.6946 8.8399 19 6 2.0323 -0.7104 -1.2305 20 7 1.7942 -1.9510 -1.5589 21 7 2.3784 -2.2241 -2.6714 22 6 3.0153 -1.1701 -3.1036 23 7 2.8099 -0.1779 -2.2039 24 6 3.3263 1.1915 -2.2690 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -1.7199 1.2951 29 1 3.1264 -0.7995 1.2055 30 1 1.1490 0.8594 2.3518 31 1 2.0330 1.3639 4.8470 32 1 0.5121 0.4436 4.9372 33 1 1.6732 -1.3544 6.1885 34 1 3.1945 -0.4345 6.0987 35 1 2.1380 1.4327 7.3427 36 1 0.6171 0.5124 7.4322 37 1 2.2261 0.0039 11.8215 38 1 3.5953 -1.1004 -4.0120 39 1 4.2959 1.2381 -1.7731 40 1 3.4368 1.4890 -3.3117 41 1 2.6304 1.8663 -1.7705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638856444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:22 Heat of formation + Delta-G solvation = 23.173548 kcal Electronic energy + Delta-G solvation = -21007.775797 eV Core-core repulsion = 17730.717697 eV Total energy + Delta-G solvation = -3277.058100 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.53724 -39.63286 -36.77453 -35.45014 -34.27922 -33.25128 -32.03576 -29.98638 -28.65091 -28.16453 -26.69413 -24.15814 -23.12491 -22.59237 -20.66282 -20.38456 -19.77954 -17.65958 -17.08025 -16.72517 -16.47758 -16.19351 -15.68929 -15.39803 -14.84834 -14.56385 -14.23754 -13.99099 -13.65636 -13.51665 -13.39935 -12.95478 -12.63254 -12.35629 -12.00125 -11.91309 -11.79447 -11.63738 -11.52394 -10.96887 -10.77586 -10.68291 -10.63829 -10.00266 -9.84106 -9.69263 -9.63435 -9.40389 -9.11810 -9.10685 -8.49823 -5.99251 -3.96936 1.35918 1.97316 2.52384 2.86642 3.13794 3.32147 3.39009 3.41660 3.81388 3.99093 4.10927 4.25858 4.40852 4.43114 4.47990 4.62931 4.75698 4.98057 5.03746 5.21018 5.33897 5.34118 5.40076 5.48152 5.56230 5.60972 5.68103 5.73777 5.88310 6.11018 6.33224 6.39440 6.57889 6.70734 6.93732 7.39189 7.47178 7.50133 7.84173 8.36822 8.38809 8.61010 9.07884 9.62671 11.14503 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040747 B = 0.002510 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.995525 B =11152.607007 C =11365.148389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 H 0.092 0.908 4 C 0.132 3.868 5 N -0.740 5.740 6 C 0.513 3.487 7 O -0.531 6.531 8 C -0.140 4.140 9 C -0.088 4.088 10 C -0.014 4.014 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.064 3.936 14 N -0.904 5.904 15 Si 0.882 3.118 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.183 3.817 20 N -0.282 5.282 21 N -0.295 5.295 22 C 0.148 3.852 23 N -0.477 5.477 24 C 0.069 3.931 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.219 0.781 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 9.396 -31.042 32.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 H 0.110 0.890 4 C 0.007 3.993 5 N -0.395 5.395 6 C 0.300 3.700 7 O -0.405 6.405 8 C -0.180 4.180 9 C -0.126 4.126 10 C -0.052 4.052 11 C -0.557 4.557 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.544 5.544 15 Si 0.709 3.291 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.085 4.085 20 N -0.122 5.122 21 N -0.134 5.134 22 C -0.140 4.140 23 N -0.168 5.168 24 C -0.074 4.074 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.232 0.768 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.236 0.764 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.531 7.232 -30.719 31.596 hybrid contribution -0.047 2.657 -0.149 2.662 sum -1.577 9.889 -30.868 32.452 Atomic orbital electron populations 1.21846 0.91827 1.04156 1.02330 1.19775 0.97667 0.98049 0.87857 0.89019 1.21182 1.00078 0.96003 0.82045 1.46077 1.59616 1.28058 1.05741 1.21183 0.78593 0.85833 0.84374 1.90719 1.38933 1.24354 1.86537 1.21866 1.02822 1.00157 0.93176 1.21274 1.00982 0.99080 0.91302 1.19604 0.95967 0.95856 0.93727 1.21174 1.35360 1.09893 0.89237 0.90927 1.25062 0.95560 0.97213 0.95876 1.69924 1.46748 1.39716 0.97976 0.86752 0.80446 0.84304 0.77581 1.20349 1.21489 1.19067 1.24562 0.97086 0.92585 0.94308 1.74293 1.19585 1.10483 1.07804 1.74302 1.10229 1.22972 1.05909 1.26480 1.04215 0.84851 0.98415 1.46223 1.38897 1.12975 1.18702 1.22165 1.01102 0.79014 1.05092 0.90971 0.92300 0.90673 0.90006 0.91634 0.76754 0.89391 0.89282 0.92026 0.92091 0.96711 0.97084 0.92806 0.76441 0.89606 0.88716 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.05 37.16 0.34 -0.59 16 2 C -0.01 -0.09 2.78 -91.77 -0.25 -0.34 16 3 H 0.09 0.39 6.89 -51.93 -0.36 0.03 16 4 C 0.13 1.37 5.05 -4.05 -0.02 1.35 16 5 N -0.74 -7.59 5.28 -60.30 -0.32 -7.91 16 6 C 0.51 7.72 7.83 -10.98 -0.09 7.63 16 7 O -0.53 -10.56 15.98 5.56 0.09 -10.47 16 8 C -0.14 -2.09 5.70 -27.88 -0.16 -2.25 16 9 C -0.09 -1.82 4.44 -26.73 -0.12 -1.94 16 10 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 11 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 12 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 15 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 19 C 0.18 1.69 6.54 -154.99 -1.01 0.68 16 20 N -0.28 -3.64 12.21 32.79 0.40 -3.24 16 21 N -0.30 -3.62 12.21 29.69 0.36 -3.26 16 22 C 0.15 1.12 12.74 -89.95 -1.15 -0.03 16 23 N -0.48 -3.13 3.15 -122.69 -0.39 -3.52 16 24 C 0.07 0.12 10.91 59.84 0.65 0.78 16 25 H 0.07 0.37 7.18 -51.93 -0.37 0.00 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.40 2.67 7.66 -40.82 -0.31 2.35 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.36 8.10 -51.92 -0.42 0.94 16 34 H 0.06 1.34 8.10 -51.93 -0.42 0.91 16 35 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 36 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.22 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 41 H 0.09 0.06 7.18 -51.93 -0.37 -0.31 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -39.21 344.60 -7.32 -46.54 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -6.42 Total: -3.77 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.35 Total: -8.90 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.83 Total: -45.60 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.21 -7.32 -46.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638856444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.709 kcal (2) G-P(sol) polarization free energy of solvation -39.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds