Wall clock time and date at job start Tue Mar 31 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 C 1.34779 * 119.99805 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00027 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00010 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47345 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47276 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.47282 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99805 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00229 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99849 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99773 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46704 * 90.00319 * 15 13 11 17 17 H 1.48492 * 109.47101 * 210.00210 * 15 13 11 18 18 H 1.48498 * 109.47184 * 330.00203 * 15 13 11 19 19 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 20 20 N 1.30521 * 126.34762 * 300.02651 * 19 2 1 21 21 N 1.28597 * 109.67335 * 179.97438 * 20 19 2 22 22 C 1.30514 * 109.67313 * 359.97438 * 21 20 19 23 23 N 1.35491 * 126.34542 * 119.71121 * 19 2 1 24 24 C 1.46496 * 126.98294 * 0.03889 * 23 19 2 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 29 29 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 30 30 H 0.96995 * 120.00545 * 359.97438 * 5 4 2 31 31 H 1.08998 * 109.47412 * 299.99920 * 8 6 5 32 32 H 1.09000 * 109.46806 * 60.00055 * 8 6 5 33 33 H 1.09010 * 109.47139 * 300.00070 * 9 8 6 34 34 H 1.09001 * 109.47272 * 60.00135 * 9 8 6 35 35 H 1.08998 * 109.47375 * 300.00219 * 10 9 8 36 36 H 1.09001 * 109.47436 * 60.00418 * 10 9 8 37 37 H 0.97001 * 119.99770 * 179.97438 * 14 13 11 38 38 H 1.07997 * 126.34587 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47104 * 89.99493 * 24 23 19 40 40 H 1.08993 * 109.47491 * 209.99966 * 24 23 19 41 41 H 1.09004 * 109.47244 * 329.99923 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9965 -0.4132 3.6658 7 8 2.6266 -1.4433 3.7791 8 6 1.5984 0.3654 4.8932 9 6 2.1083 -0.3559 6.1424 10 6 1.7035 0.4342 7.3885 11 6 2.2062 -0.2760 8.6189 12 1 2.7596 -1.1984 8.5218 13 6 1.9599 0.2519 9.8687 14 7 2.3991 -0.3676 10.9423 15 14 1.0034 1.8477 10.0365 16 1 -0.4462 1.5461 10.1512 17 1 1.4563 2.5706 11.2520 18 1 1.2398 2.6946 8.8399 19 6 2.0323 -0.7104 -1.2305 20 7 1.7942 -1.9510 -1.5589 21 7 2.3784 -2.2241 -2.6714 22 6 3.0153 -1.1701 -3.1036 23 7 2.8099 -0.1779 -2.2039 24 6 3.3263 1.1915 -2.2690 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -1.7199 1.2951 29 1 3.1264 -0.7995 1.2055 30 1 1.1490 0.8594 2.3518 31 1 2.0330 1.3639 4.8470 32 1 0.5121 0.4436 4.9372 33 1 1.6732 -1.3544 6.1885 34 1 3.1945 -0.4345 6.0987 35 1 2.1380 1.4327 7.3427 36 1 0.6171 0.5124 7.4322 37 1 2.2261 0.0039 11.8215 38 1 3.5953 -1.1004 -4.0120 39 1 4.2959 1.2381 -1.7731 40 1 3.4368 1.4890 -3.3117 41 1 2.6304 1.8663 -1.7705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638856444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:21 Heat of formation + Delta-G solvation = -5.152299 kcal Electronic energy + Delta-G solvation = -21009.004098 eV Core-core repulsion = 17730.717697 eV Total energy + Delta-G solvation = -3278.286400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.15041 -40.80569 -37.63719 -36.10767 -35.94240 -34.27266 -33.96338 -30.79929 -30.15527 -28.43815 -27.68419 -25.53144 -24.15204 -23.23921 -22.07213 -21.45171 -20.86780 -18.93518 -18.22897 -17.77994 -17.39880 -17.01209 -16.79467 -16.27079 -16.08870 -15.63747 -15.42799 -14.87757 -14.71373 -14.60158 -14.25378 -13.90295 -13.78507 -13.63808 -13.22200 -12.93827 -12.67372 -12.59013 -12.45661 -12.40381 -12.20967 -11.76341 -11.70604 -11.46481 -11.31750 -11.30083 -11.10506 -10.85445 -10.73068 -10.30150 -10.13808 -8.25689 -6.31550 0.79659 1.40501 1.44568 1.53911 1.56593 1.68669 1.83391 2.22504 2.41412 3.09490 3.20551 3.55267 3.75464 3.84670 3.88737 3.94507 4.08548 4.20389 4.29735 4.37107 4.43404 4.60766 4.68091 4.71740 4.78107 4.83522 4.91938 4.96627 5.00255 5.04074 5.06951 5.13146 5.31870 5.40119 5.60266 5.63756 5.70738 5.94241 6.33137 6.58481 6.77658 7.31521 7.33230 7.71451 8.92181 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040747 B = 0.002510 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.995525 B =11152.607007 C =11365.148389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.001 3.999 3 H 0.134 0.866 4 C 0.137 3.863 5 N -0.711 5.711 6 C 0.512 3.488 7 O -0.592 6.592 8 C -0.128 4.128 9 C -0.084 4.084 10 C -0.009 4.009 11 C -0.541 4.541 12 H 0.016 0.984 13 C -0.007 4.007 14 N -0.959 5.959 15 Si 0.965 3.035 16 H -0.265 1.265 17 H -0.288 1.288 18 H -0.231 1.231 19 C 0.177 3.823 20 N -0.337 5.337 21 N -0.355 5.355 22 C 0.162 3.838 23 N -0.472 5.472 24 C 0.058 3.942 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.422 0.578 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 14.292 -33.247 36.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 H 0.151 0.849 4 C 0.012 3.988 5 N -0.365 5.365 6 C 0.300 3.700 7 O -0.471 6.471 8 C -0.167 4.167 9 C -0.122 4.122 10 C -0.046 4.046 11 C -0.579 4.579 12 H 0.035 0.965 13 C -0.202 4.202 14 N -0.600 5.600 15 Si 0.787 3.213 16 H -0.190 1.190 17 H -0.214 1.214 18 H -0.154 1.154 19 C -0.093 4.093 20 N -0.177 5.177 21 N -0.193 5.193 22 C -0.127 4.127 23 N -0.161 5.161 24 C -0.082 4.082 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.261 0.739 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.277 0.723 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.911 12.181 -32.987 35.285 hybrid contribution 0.486 1.049 0.501 1.260 sum -2.424 13.230 -32.486 35.160 Atomic orbital electron populations 1.21836 0.91197 1.02860 1.03986 1.19789 0.98007 0.99178 0.85063 0.84872 1.21050 0.99002 0.95246 0.83537 1.45722 1.58244 1.28341 1.04224 1.21268 0.77927 0.84990 0.85807 1.90715 1.41943 1.27054 1.87437 1.21721 1.04748 1.00511 0.89760 1.21064 0.99387 0.98218 0.93536 1.19546 0.96828 0.96125 0.92084 1.21592 1.35224 1.08744 0.92346 0.96549 1.26258 0.96769 1.02179 0.95008 1.70118 1.48669 1.42325 0.98867 0.85454 0.78650 0.78447 0.78794 1.18970 1.21377 1.15406 1.24833 0.97182 0.92042 0.95240 1.74165 1.21632 1.12960 1.08925 1.74172 1.12643 1.25741 1.06783 1.27256 1.02465 0.83913 0.99038 1.46484 1.37783 1.14446 1.17426 1.22601 1.01691 0.76523 1.07393 0.88942 0.90912 0.93519 0.93251 0.93217 0.73928 0.85842 0.86051 0.94887 0.94692 0.94812 0.95099 0.92555 0.72334 0.88832 0.86065 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.05 71.98 0.65 -0.85 16 2 C 0.00 0.01 2.78 -11.54 -0.03 -0.03 16 3 H 0.13 0.48 6.89 -2.39 -0.02 0.46 16 4 C 0.14 2.75 5.05 86.38 0.44 3.19 16 5 N -0.71 -12.77 5.28 -463.06 -2.45 -15.21 16 6 C 0.51 14.74 7.83 87.66 0.69 15.43 16 7 O -0.59 -24.36 15.98 -3.03 -0.05 -24.41 16 8 C -0.13 -3.41 5.70 29.85 0.17 -3.24 16 9 C -0.08 -3.46 4.44 30.59 0.14 -3.33 16 10 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 11 C -0.54 -32.62 9.66 25.60 0.25 -32.37 16 12 H 0.02 1.11 7.99 -2.91 -0.02 1.09 16 13 C -0.01 -0.39 5.47 84.66 0.46 0.07 16 14 N -0.96 -62.26 13.96 21.45 0.30 -61.96 16 15 Si 0.96 43.48 27.47 68.60 1.88 45.37 16 16 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.23 -9.10 6.54 99.48 0.65 -8.45 16 19 C 0.18 3.10 6.54 137.98 0.90 4.00 16 20 N -0.34 -9.04 12.21 -50.16 -0.61 -9.65 16 21 N -0.35 -8.92 12.21 -59.99 -0.73 -9.65 16 22 C 0.16 2.21 12.74 180.11 2.30 4.51 16 23 N -0.47 -5.09 3.15 -542.09 -1.71 -6.79 16 24 C 0.06 -0.03 10.91 127.77 1.39 1.36 16 25 H 0.09 0.58 7.18 -2.39 -0.02 0.57 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.42 3.63 7.66 -92.71 -0.71 2.92 16 31 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.03 1.51 8.10 -2.38 -0.02 1.49 16 34 H 0.03 1.58 8.10 -2.39 -0.02 1.56 16 35 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 36 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 37 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 38 H 0.26 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.11 -0.42 7.18 -2.38 -0.02 -0.43 16 Total: -1.00 -95.16 344.60 4.36 -90.80 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 0.26 Total: 3.02 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 7.47 Total: -11.52 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -5.20 Total: -103.26 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Total: -95.16 4.36 -90.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638856444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.645 kcal (2) G-P(sol) polarization free energy of solvation -95.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds