Wall clock time and date at job start Tue Mar 31 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53003 * 109.47441 * 239.99502 * 2 1 3 5 5 N 1.46502 * 109.46684 * 65.00346 * 4 2 1 6 6 C 1.34776 * 120.00000 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99903 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00172 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47185 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47154 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46881 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00550 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99497 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99753 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00471 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.47044 * 90.00221 * 15 13 11 17 17 H 1.48494 * 109.47501 * 210.00382 * 15 13 11 18 18 H 1.48500 * 109.46979 * 330.00799 * 15 13 11 19 19 C 1.50703 * 109.46811 * 119.99858 * 2 1 3 20 20 N 1.30514 * 126.34899 * 59.98030 * 19 2 1 21 21 N 1.28594 * 109.67896 * 179.97438 * 20 19 2 22 22 C 1.30526 * 109.66842 * 359.97438 * 21 20 19 23 23 N 1.35492 * 107.30762 * 0.22713 * 22 21 20 24 24 C 1.46493 * 126.98168 * 179.77439 * 23 22 21 25 25 H 1.09002 * 109.47245 * 300.00443 * 1 2 3 26 26 H 1.09004 * 109.46654 * 60.00059 * 1 2 3 27 27 H 1.09000 * 109.47438 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47522 * 184.99919 * 4 2 1 29 29 H 1.08996 * 109.47150 * 305.01009 * 4 2 1 30 30 H 0.97003 * 120.00573 * 359.97438 * 5 4 2 31 31 H 1.09006 * 109.46879 * 299.99835 * 8 6 5 32 32 H 1.08992 * 109.47157 * 59.99611 * 8 6 5 33 33 H 1.09005 * 109.47049 * 300.00144 * 9 8 6 34 34 H 1.09001 * 109.47500 * 59.99481 * 9 8 6 35 35 H 1.09006 * 109.46751 * 299.99532 * 10 9 8 36 36 H 1.08992 * 109.47315 * 59.99327 * 10 9 8 37 37 H 0.96999 * 119.99921 * 179.97438 * 14 13 11 38 38 H 1.08002 * 126.34271 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47529 * 90.02432 * 24 23 22 40 40 H 1.08999 * 109.47709 * 210.02442 * 24 23 22 41 41 H 1.09005 * 109.47242 * 330.02465 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 1.9957 -0.4137 -3.6659 7 8 2.6257 -1.4438 -3.7792 8 6 1.5966 0.3643 -4.8934 9 6 2.1056 -0.3576 -6.1426 10 6 1.7010 0.4326 -7.3887 11 6 2.2030 -0.2782 -8.6191 12 1 2.7557 -1.2009 -8.5221 13 6 1.9575 0.2502 -9.8687 14 7 2.3951 -0.3703 -10.9426 15 14 1.0021 1.8466 -10.0367 16 1 1.9455 2.9932 -10.0104 17 1 0.2594 1.8461 -11.3225 18 1 0.0420 1.9697 -8.9105 19 6 2.0322 -0.7104 1.2305 20 7 1.7942 -1.9509 1.5589 21 7 2.3792 -2.2244 2.6709 22 6 3.0176 -1.1708 3.1023 23 7 2.8117 -0.1785 2.2029 24 6 3.3289 1.1905 2.2674 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7996 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.1483 0.8590 -2.3519 31 1 0.5102 0.4424 -4.9367 32 1 2.0311 1.3628 -4.8478 33 1 3.1920 -0.4362 -6.0995 34 1 1.6708 -1.3561 -6.1879 35 1 0.6147 0.5114 -7.4320 36 1 2.1362 1.4308 -7.3432 37 1 2.2220 0.0012 -11.8217 38 1 3.5985 -1.1015 4.0101 39 1 4.2965 1.2374 1.7677 40 1 2.6314 1.8662 1.7724 41 1 3.4437 1.4869 3.3101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638856445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:23 Heat of formation + Delta-G solvation = 23.175559 kcal Electronic energy + Delta-G solvation = -21007.962060 eV Core-core repulsion = 17730.904048 eV Total energy + Delta-G solvation = -3277.058012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.53706 -39.63305 -36.77428 -35.45057 -34.27929 -33.25099 -32.03452 -29.98586 -28.65076 -28.16470 -26.69407 -24.15769 -23.12479 -22.59269 -20.66255 -20.38470 -19.77987 -17.65949 -17.08026 -16.72517 -16.47805 -16.19392 -15.68620 -15.39989 -14.84839 -14.56826 -14.23000 -13.98882 -13.66806 -13.52061 -13.38585 -12.95950 -12.62851 -12.36228 -11.97743 -11.92905 -11.80206 -11.63228 -11.52581 -10.96843 -10.77651 -10.68339 -10.63785 -10.00210 -9.84118 -9.69048 -9.63541 -9.40374 -9.11744 -9.10816 -8.49776 -5.99229 -3.96944 1.35905 1.97320 2.52388 2.86659 3.13786 3.31850 3.39056 3.41894 3.81373 3.99045 4.10959 4.25851 4.40861 4.43104 4.48012 4.62976 4.75685 4.98064 5.03735 5.21020 5.33874 5.34147 5.40066 5.48179 5.56185 5.61018 5.68106 5.73771 5.88331 6.10999 6.33203 6.39434 6.57898 6.70714 6.93686 7.39227 7.47161 7.50126 7.84193 8.36840 8.38814 8.61005 9.07881 9.62664 11.14521 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040741 B = 0.002510 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.099470 B =11151.879632 C =11364.235697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 H 0.092 0.908 4 C 0.132 3.868 5 N -0.740 5.740 6 C 0.513 3.487 7 O -0.531 6.531 8 C -0.140 4.140 9 C -0.088 4.088 10 C -0.014 4.014 11 C -0.518 4.518 12 H 0.073 0.927 13 C 0.063 3.937 14 N -0.904 5.904 15 Si 0.882 3.118 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.182 3.818 20 N -0.282 5.282 21 N -0.295 5.295 22 C 0.148 3.852 23 N -0.477 5.477 24 C 0.069 3.931 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.398 0.602 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.010 0.990 37 H 0.262 0.738 38 H 0.219 0.781 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 9.376 31.039 32.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 H 0.110 0.890 4 C 0.007 3.993 5 N -0.395 5.395 6 C 0.300 3.700 7 O -0.405 6.405 8 C -0.180 4.180 9 C -0.126 4.126 10 C -0.052 4.052 11 C -0.556 4.556 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.544 5.544 15 Si 0.709 3.291 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.085 4.085 20 N -0.122 5.122 21 N -0.134 5.134 22 C -0.140 4.140 23 N -0.168 5.168 24 C -0.074 4.074 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.232 0.768 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.236 0.764 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.562 7.209 30.717 31.590 hybrid contribution -0.007 2.680 0.150 2.684 sum -1.569 9.890 30.867 32.450 Atomic orbital electron populations 1.21845 0.91828 1.04156 1.02332 1.19776 0.97668 0.98049 0.87852 0.89018 1.21183 1.00078 0.96000 0.82044 1.46081 1.59605 1.28071 1.05739 1.21182 0.78599 0.85828 0.84374 1.90719 1.38940 1.24349 1.86538 1.21867 1.02827 1.00154 0.93173 1.21274 1.00970 0.99092 0.91301 1.19605 0.96318 0.95513 0.93722 1.21173 1.35327 1.09904 0.89244 0.90927 1.25064 0.95511 0.97271 0.95880 1.69928 1.46770 1.39698 0.97976 0.86751 0.80637 0.84211 0.77472 1.20402 1.21469 1.19035 1.24563 0.97062 0.92591 0.94331 1.74287 1.19601 1.10466 1.07807 1.74307 1.10205 1.22977 1.05924 1.26482 1.04202 0.84860 0.98418 1.46222 1.38814 1.12987 1.18771 1.22164 1.01089 0.79026 1.05093 0.92297 0.90973 0.90672 0.91631 0.90008 0.76753 0.89277 0.89396 0.92121 0.91997 0.96648 0.97140 0.92810 0.76440 0.89607 0.88943 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.05 37.16 0.34 -0.60 16 2 C -0.01 -0.09 2.78 -91.77 -0.26 -0.34 16 3 H 0.09 0.39 6.90 -51.93 -0.36 0.03 16 4 C 0.13 1.37 5.05 -4.04 -0.02 1.35 16 5 N -0.74 -7.59 5.28 -60.29 -0.32 -7.91 16 6 C 0.51 7.71 7.83 -10.98 -0.09 7.63 16 7 O -0.53 -10.56 15.98 5.56 0.09 -10.47 16 8 C -0.14 -2.09 5.70 -27.88 -0.16 -2.25 16 9 C -0.09 -1.82 4.44 -26.73 -0.12 -1.94 16 10 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 11 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 12 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 14 N -0.90 -28.46 13.96 55.43 0.77 -27.68 16 15 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 19 C 0.18 1.69 6.54 -154.99 -1.01 0.68 16 20 N -0.28 -3.64 12.21 32.80 0.40 -3.24 16 21 N -0.30 -3.62 12.21 29.69 0.36 -3.26 16 22 C 0.15 1.12 12.74 -89.94 -1.15 -0.03 16 23 N -0.48 -3.13 3.15 -122.69 -0.39 -3.52 16 24 C 0.07 0.12 10.90 59.84 0.65 0.78 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.37 7.18 -51.93 -0.37 0.00 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.40 2.67 7.65 -40.82 -0.31 2.35 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 35 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 36 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.22 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.09 0.06 7.19 -51.93 -0.37 -0.31 16 41 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -39.21 344.60 -7.32 -46.54 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -6.42 Total: -3.77 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.35 Total: -8.91 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.83 Total: -45.61 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.21 -7.32 -46.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638856445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.713 kcal (2) G-P(sol) polarization free energy of solvation -39.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds