Wall clock time and date at job start Tue Mar 31 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53003 * 109.47441 * 239.99502 * 2 1 3 5 5 N 1.46502 * 109.46684 * 65.00346 * 4 2 1 6 6 C 1.34776 * 120.00000 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99903 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00172 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47185 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47154 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46881 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00550 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99497 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99753 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00471 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.47044 * 90.00221 * 15 13 11 17 17 H 1.48494 * 109.47501 * 210.00382 * 15 13 11 18 18 H 1.48500 * 109.46979 * 330.00799 * 15 13 11 19 19 C 1.50703 * 109.46811 * 119.99858 * 2 1 3 20 20 N 1.30514 * 126.34899 * 59.98030 * 19 2 1 21 21 N 1.28594 * 109.67896 * 179.97438 * 20 19 2 22 22 C 1.30526 * 109.66842 * 359.97438 * 21 20 19 23 23 N 1.35492 * 107.30762 * 0.22713 * 22 21 20 24 24 C 1.46493 * 126.98168 * 179.77439 * 23 22 21 25 25 H 1.09002 * 109.47245 * 300.00443 * 1 2 3 26 26 H 1.09004 * 109.46654 * 60.00059 * 1 2 3 27 27 H 1.09000 * 109.47438 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47522 * 184.99919 * 4 2 1 29 29 H 1.08996 * 109.47150 * 305.01009 * 4 2 1 30 30 H 0.97003 * 120.00573 * 359.97438 * 5 4 2 31 31 H 1.09006 * 109.46879 * 299.99835 * 8 6 5 32 32 H 1.08992 * 109.47157 * 59.99611 * 8 6 5 33 33 H 1.09005 * 109.47049 * 300.00144 * 9 8 6 34 34 H 1.09001 * 109.47500 * 59.99481 * 9 8 6 35 35 H 1.09006 * 109.46751 * 299.99532 * 10 9 8 36 36 H 1.08992 * 109.47315 * 59.99327 * 10 9 8 37 37 H 0.96999 * 119.99921 * 179.97438 * 14 13 11 38 38 H 1.08002 * 126.34271 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47529 * 90.02432 * 24 23 22 40 40 H 1.08999 * 109.47709 * 210.02442 * 24 23 22 41 41 H 1.09005 * 109.47242 * 330.02465 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 1.9957 -0.4137 -3.6659 7 8 2.6257 -1.4438 -3.7792 8 6 1.5966 0.3643 -4.8934 9 6 2.1056 -0.3576 -6.1426 10 6 1.7010 0.4326 -7.3887 11 6 2.2030 -0.2782 -8.6191 12 1 2.7557 -1.2009 -8.5221 13 6 1.9575 0.2502 -9.8687 14 7 2.3951 -0.3703 -10.9426 15 14 1.0021 1.8466 -10.0367 16 1 1.9455 2.9932 -10.0104 17 1 0.2594 1.8461 -11.3225 18 1 0.0420 1.9697 -8.9105 19 6 2.0322 -0.7104 1.2305 20 7 1.7942 -1.9509 1.5589 21 7 2.3792 -2.2244 2.6709 22 6 3.0176 -1.1708 3.1023 23 7 2.8117 -0.1785 2.2029 24 6 3.3289 1.1905 2.2674 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7996 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.1483 0.8590 -2.3519 31 1 0.5102 0.4424 -4.9367 32 1 2.0311 1.3628 -4.8478 33 1 3.1920 -0.4362 -6.0995 34 1 1.6708 -1.3561 -6.1879 35 1 0.6147 0.5114 -7.4320 36 1 2.1362 1.4308 -7.3432 37 1 2.2220 0.0012 -11.8217 38 1 3.5985 -1.1015 4.0101 39 1 4.2965 1.2374 1.7677 40 1 2.6314 1.8662 1.7724 41 1 3.4437 1.4869 3.3101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638856445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:23 Heat of formation + Delta-G solvation = -5.151849 kcal Electronic energy + Delta-G solvation = -21009.190429 eV Core-core repulsion = 17730.904048 eV Total energy + Delta-G solvation = -3278.286381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.15023 -40.80600 -37.63693 -36.10776 -35.94277 -34.27220 -33.96255 -30.79884 -30.15520 -28.43831 -27.68441 -25.53126 -24.15174 -23.23937 -22.07221 -21.45163 -20.86810 -18.93549 -18.22885 -17.78039 -17.39906 -17.01290 -16.78949 -16.28492 -16.07681 -15.63661 -15.42909 -14.88885 -14.69178 -14.61164 -14.25484 -13.91206 -13.77435 -13.64061 -13.22208 -12.93650 -12.67489 -12.59164 -12.45671 -12.40061 -12.21015 -11.76593 -11.70624 -11.46406 -11.31681 -11.30216 -11.10513 -10.85448 -10.72937 -10.30119 -10.13839 -8.25691 -6.31569 0.79644 1.40295 1.44637 1.53910 1.56729 1.68681 1.83405 2.22485 2.41433 3.09438 3.20536 3.55261 3.75429 3.84709 3.88757 3.94489 4.08569 4.20384 4.29723 4.37099 4.43410 4.60802 4.68087 4.71745 4.78089 4.83502 4.91918 4.96594 5.00324 5.03993 5.06931 5.13145 5.31858 5.40102 5.60297 5.63700 5.70767 5.94247 6.33113 6.58452 6.77659 7.31508 7.33218 7.71468 8.92174 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040741 B = 0.002510 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.099470 B =11151.879632 C =11364.235697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.001 3.999 3 H 0.134 0.866 4 C 0.137 3.863 5 N -0.711 5.711 6 C 0.512 3.488 7 O -0.592 6.592 8 C -0.128 4.128 9 C -0.084 4.084 10 C -0.008 4.008 11 C -0.541 4.541 12 H 0.016 0.984 13 C -0.007 4.007 14 N -0.959 5.959 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.288 1.288 18 H -0.233 1.233 19 C 0.177 3.823 20 N -0.337 5.337 21 N -0.355 5.355 22 C 0.162 3.838 23 N -0.472 5.472 24 C 0.058 3.942 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.422 0.578 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 14.263 33.240 36.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 H 0.151 0.849 4 C 0.012 3.988 5 N -0.365 5.365 6 C 0.300 3.700 7 O -0.471 6.471 8 C -0.167 4.167 9 C -0.122 4.122 10 C -0.046 4.046 11 C -0.579 4.579 12 H 0.035 0.965 13 C -0.202 4.202 14 N -0.600 5.600 15 Si 0.787 3.213 16 H -0.188 1.188 17 H -0.214 1.214 18 H -0.155 1.155 19 C -0.093 4.093 20 N -0.177 5.177 21 N -0.193 5.193 22 C -0.127 4.127 23 N -0.161 5.161 24 C -0.082 4.082 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.261 0.739 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.277 0.723 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.946 12.150 32.980 35.270 hybrid contribution 0.531 1.077 -0.498 1.300 sum -2.415 13.227 32.481 35.154 Atomic orbital electron populations 1.21836 0.91202 1.02860 1.03985 1.19789 0.98006 0.99179 0.85059 0.84871 1.21051 0.99006 0.95242 0.83535 1.45726 1.58236 1.28352 1.04222 1.21267 0.77934 0.84985 0.85807 1.90714 1.41950 1.27046 1.87438 1.21722 1.04717 1.00542 0.89760 1.21065 0.99385 0.98221 0.93534 1.19545 0.96996 0.95956 0.92083 1.21591 1.35216 1.08735 0.92352 0.96542 1.26259 0.96714 1.02235 0.95012 1.70122 1.48670 1.42328 0.98868 0.85452 0.79428 0.78028 0.78430 1.18789 1.21440 1.15531 1.24834 0.97161 0.92046 0.95261 1.74159 1.21648 1.12943 1.08928 1.74178 1.12619 1.25745 1.06800 1.27259 1.02457 0.83921 0.99037 1.46483 1.37700 1.14457 1.17495 1.22599 1.01679 0.76537 1.07393 0.90909 0.88949 0.93516 0.93209 0.93254 0.73928 0.86107 0.85792 0.94695 0.94880 0.94966 0.94951 0.92556 0.72332 0.88835 0.87157 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.05 71.98 0.65 -0.85 16 2 C 0.00 0.01 2.78 -11.54 -0.03 -0.02 16 3 H 0.13 0.48 6.90 -2.39 -0.02 0.46 16 4 C 0.14 2.75 5.05 86.38 0.44 3.19 16 5 N -0.71 -12.77 5.28 -463.06 -2.45 -15.22 16 6 C 0.51 14.74 7.83 87.66 0.69 15.43 16 7 O -0.59 -24.36 15.98 -3.03 -0.05 -24.41 16 8 C -0.13 -3.41 5.70 29.85 0.17 -3.24 16 9 C -0.08 -3.46 4.44 30.59 0.14 -3.33 16 10 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 11 C -0.54 -32.61 9.66 25.60 0.25 -32.37 16 12 H 0.02 1.12 7.99 -2.91 -0.02 1.09 16 13 C -0.01 -0.40 5.47 84.65 0.46 0.07 16 14 N -0.96 -62.26 13.96 21.45 0.30 -61.96 16 15 Si 0.96 43.49 27.47 68.60 1.88 45.37 16 16 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.23 -9.20 6.54 99.48 0.65 -8.55 16 19 C 0.18 3.10 6.54 137.98 0.90 4.00 16 20 N -0.34 -9.04 12.21 -50.15 -0.61 -9.65 16 21 N -0.35 -8.92 12.21 -59.99 -0.73 -9.65 16 22 C 0.16 2.21 12.74 180.11 2.30 4.51 16 23 N -0.47 -5.09 3.15 -542.08 -1.71 -6.79 16 24 C 0.06 -0.03 10.90 127.77 1.39 1.36 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 0.59 7.18 -2.39 -0.02 0.57 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.42 3.63 7.65 -92.71 -0.71 2.92 16 31 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.03 1.58 8.10 -2.38 -0.02 1.56 16 34 H 0.03 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.03 1.38 7.20 -2.38 -0.02 1.37 16 36 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 37 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 38 H 0.26 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.11 -0.42 7.19 -2.39 -0.02 -0.43 16 41 H 0.12 -0.66 8.14 -2.38 -0.02 -0.68 16 Total: -1.00 -95.15 344.60 4.36 -90.79 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 0.26 Total: 3.03 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 7.47 Total: -11.51 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -5.20 Total: -103.27 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -95.15 4.36 -90.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638856445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.636 kcal (2) G-P(sol) polarization free energy of solvation -95.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds