Wall clock time and date at job start Tue Mar 31 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99686 * 2 1 3 5 5 H 1.07998 * 119.99629 * 120.00096 * 4 2 1 6 6 C 1.37875 * 119.99955 * 300.00667 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47474 * 89.99404 * 8 6 4 10 10 H 1.48504 * 109.47121 * 209.99526 * 8 6 4 11 11 H 1.48499 * 109.47026 * 329.99368 * 8 6 4 12 12 N 1.46899 * 109.47254 * 239.99813 * 2 1 3 13 13 C 1.46902 * 110.99869 * 85.00254 * 12 2 1 14 14 C 1.50691 * 109.47150 * 180.02562 * 13 12 2 15 15 C 1.35356 * 126.75345 * 94.99831 * 14 13 12 16 16 N 1.35310 * 106.17497 * 180.02562 * 15 14 13 17 17 C 1.46502 * 125.86730 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47174 * 124.99667 * 17 16 15 19 19 H 1.09000 * 110.27794 * 55.64271 * 18 17 16 20 20 C 1.54956 * 110.31113 * 177.83422 * 18 17 16 21 21 C 1.55307 * 100.94201 * 155.35940 * 20 18 17 22 22 C 1.54379 * 102.25260 * 325.86794 * 21 20 18 23 23 O 1.43241 * 107.59123 * 21.35791 * 22 21 20 24 24 N 1.28716 * 108.26628 * 359.97438 * 16 15 14 25 25 N 1.28630 * 110.17715 * 359.72513 * 24 16 15 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 29 29 H 0.97003 * 119.99476 * 180.02562 * 7 6 4 30 30 H 1.00903 * 110.99887 * 208.95238 * 12 2 1 31 31 H 1.09003 * 109.47035 * 299.99864 * 13 12 2 32 32 H 1.09003 * 109.47106 * 59.99614 * 13 12 2 33 33 H 1.07999 * 126.91328 * 359.96221 * 15 14 13 34 34 H 1.08998 * 109.47243 * 244.99725 * 17 16 15 35 35 H 1.09001 * 109.46993 * 4.99729 * 17 16 15 36 36 H 1.08994 * 111.12286 * 273.28258 * 20 18 17 37 37 H 1.09000 * 111.11765 * 37.44153 * 20 18 17 38 38 H 1.08999 * 110.84666 * 207.67526 * 21 20 18 39 39 H 1.09003 * 111.02211 * 84.13652 * 21 20 18 40 40 H 1.08994 * 109.83542 * 261.84230 * 22 21 20 41 41 H 1.09006 * 109.90365 * 140.90905 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5874 -0.5218 -3.5559 15 6 1.8370 -1.1035 -4.5206 16 7 2.7094 -1.6501 -5.3986 17 6 2.3556 -2.3894 -6.6129 18 6 3.0458 -1.7494 -7.8190 19 1 4.1227 -1.7025 -7.6570 20 6 2.7282 -2.5494 -9.1075 21 6 2.9280 -1.4547 -10.1909 22 6 2.4462 -0.1815 -9.4629 23 8 2.5193 -0.4340 -8.0549 24 7 3.9038 -1.4089 -4.9837 25 7 3.8654 -0.7325 -3.8902 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.7093 1.1617 3.4844 30 1 2.9173 -1.1205 -1.0286 31 1 1.0871 0.6163 -2.5525 32 1 2.7589 1.0462 -2.1181 33 1 0.7587 -1.1275 -4.5775 34 1 2.6808 -3.4251 -6.5154 35 1 1.2752 -2.3596 -6.7545 36 1 3.4321 -3.3702 -9.2438 37 1 1.7005 -2.9126 -9.1009 38 1 2.3112 -1.6581 -11.0662 39 1 3.9781 -1.3680 -10.4701 40 1 1.4170 0.0393 -9.7460 41 1 3.0893 0.6598 -9.7216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:14 Heat of formation + Delta-G solvation = 51.309750 kcal Electronic energy + Delta-G solvation = -21414.155336 eV Core-core repulsion = 18138.317313 eV Total energy + Delta-G solvation = -3275.838022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.95287 -39.89208 -36.06633 -34.77786 -32.79451 -32.62443 -30.92026 -30.68544 -28.26060 -26.54933 -25.37323 -24.37111 -22.68285 -22.09144 -21.53269 -20.36589 -19.67092 -17.65730 -17.04744 -16.64936 -16.32239 -15.78774 -15.23227 -14.89697 -14.62907 -14.13733 -14.04956 -13.59098 -13.39298 -13.19462 -12.90600 -12.44540 -12.30108 -11.98496 -11.86022 -11.73351 -11.45440 -11.34976 -11.04533 -10.78565 -10.74912 -10.55429 -10.18521 -10.10328 -10.06518 -9.96853 -9.70558 -8.88989 -8.71459 -8.41156 -7.20439 -5.96946 -4.02582 1.86501 2.40052 2.90333 3.25917 3.34805 3.40771 3.45442 3.89273 4.02763 4.34575 4.43619 4.46498 4.59060 4.67985 4.74029 4.87077 4.92646 5.16144 5.20720 5.26323 5.34463 5.34826 5.40230 5.48161 5.57831 5.69152 5.84935 6.20972 6.43633 6.51964 6.56501 6.79845 6.93148 7.18900 7.27445 7.55291 7.84582 7.95746 8.32798 8.45257 8.72729 8.82531 9.07831 9.62972 11.09544 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046997 B = 0.002778 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.635483 B =10076.432474 C =10300.823294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.143 3.857 14 C -0.001 4.001 15 C -0.032 4.032 16 N -0.293 5.293 17 C 0.121 3.879 18 C 0.067 3.933 19 H 0.090 0.910 20 C -0.149 4.149 21 C -0.154 4.154 22 C 0.050 3.950 23 O -0.374 6.374 24 N -0.095 5.095 25 N -0.264 5.264 26 H 0.004 0.996 27 H 0.031 0.969 28 H 0.081 0.919 29 H 0.260 0.740 30 H 0.335 0.665 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.187 0.813 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -5.884 -26.451 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.316 5.316 13 C 0.011 3.989 14 C -0.139 4.139 15 C -0.183 4.183 16 N -0.086 5.086 17 C -0.001 4.001 18 C 0.009 3.991 19 H 0.108 0.892 20 C -0.187 4.187 21 C -0.192 4.192 22 C -0.027 4.027 23 O -0.293 6.293 24 N -0.074 5.074 25 N -0.132 5.132 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.204 0.796 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.758 -6.056 -26.603 27.294 hybrid contribution -0.153 0.015 0.921 0.933 sum 0.605 -6.041 -25.682 26.390 Atomic orbital electron populations 1.21722 0.97848 0.99309 0.99387 1.19129 0.92592 0.92502 0.85426 0.97907 1.21265 1.31246 1.12494 0.90419 0.92220 1.24910 0.95078 0.95041 0.99007 1.69900 1.36759 1.22942 1.23394 0.86519 0.78467 0.80075 0.82465 1.20741 1.21255 1.19892 1.60802 1.32602 1.32617 1.05577 1.20135 0.99307 0.92728 0.86711 1.22143 0.89221 1.03486 0.99042 1.23309 0.98500 1.03501 0.93002 1.47071 1.05517 1.37375 1.18683 1.22224 1.02296 0.95583 0.80017 1.23335 0.98998 0.83310 0.93452 0.89183 1.23267 1.03510 0.98655 0.93242 1.23110 1.02864 0.94362 0.98866 1.23154 1.01321 0.97512 0.80714 1.88524 1.85384 1.32152 1.23261 1.78152 1.03655 1.16331 1.09296 1.75032 1.19979 1.12337 1.05823 0.97650 0.94989 0.90071 0.92978 0.84730 0.90192 0.94300 0.79618 0.87177 0.87183 0.89093 0.89704 0.89653 0.90211 0.91085 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.49 2.60 -68.86 -0.18 5.31 16 3 H 0.00 0.09 7.80 -51.93 -0.40 -0.31 16 4 C -0.52 -14.57 8.59 -34.44 -0.30 -14.87 16 5 H 0.06 1.68 7.62 -52.49 -0.40 1.28 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.86 11.32 55.43 0.63 -25.23 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -15.49 6.29 -109.22 -0.69 -16.17 16 13 C 0.14 2.80 6.04 -4.98 -0.03 2.76 16 14 C 0.00 -0.02 6.76 -82.78 -0.56 -0.58 16 15 C -0.03 -0.48 11.50 -17.05 -0.20 -0.68 16 16 N -0.29 -4.02 3.42 -61.26 -0.21 -4.23 16 17 C 0.12 1.01 6.17 -4.04 -0.02 0.99 16 18 C 0.07 0.56 3.51 -25.70 -0.09 0.47 16 19 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 20 C -0.15 -0.69 6.57 -24.48 -0.16 -0.85 16 21 C -0.15 -0.72 7.02 -24.79 -0.17 -0.90 16 22 C 0.05 0.35 7.79 37.88 0.30 0.65 16 23 O -0.37 -4.01 11.02 -35.23 -0.39 -4.39 16 24 N -0.10 -1.63 12.86 60.35 0.78 -0.86 16 25 N -0.26 -5.16 12.41 33.29 0.41 -4.75 16 26 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.34 7.83 8.22 -39.29 -0.32 7.51 16 31 H 0.08 1.46 7.44 -51.93 -0.39 1.08 16 32 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.19 2.15 8.06 -52.49 -0.42 1.72 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 0.68 8.07 -51.93 -0.42 0.26 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.30 8.06 -51.93 -0.42 -0.12 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -33.66 339.41 -6.95 -40.61 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.41 Total: 1.98 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.17 Total: -8.83 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.92 Total: -51.25 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.39 Total: -4.39 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.66 -6.95 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.918 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds