Wall clock time and date at job start Tue Mar 31 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99686 * 2 1 3 5 5 H 1.07998 * 119.99629 * 120.00096 * 4 2 1 6 6 C 1.37875 * 119.99955 * 300.00667 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47474 * 89.99404 * 8 6 4 10 10 H 1.48504 * 109.47121 * 209.99526 * 8 6 4 11 11 H 1.48499 * 109.47026 * 329.99368 * 8 6 4 12 12 N 1.46899 * 109.47254 * 239.99813 * 2 1 3 13 13 C 1.46902 * 110.99869 * 85.00254 * 12 2 1 14 14 C 1.50691 * 109.47150 * 180.02562 * 13 12 2 15 15 C 1.35356 * 126.75345 * 94.99831 * 14 13 12 16 16 N 1.35310 * 106.17497 * 180.02562 * 15 14 13 17 17 C 1.46502 * 125.86730 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47174 * 124.99667 * 17 16 15 19 19 H 1.09000 * 110.27794 * 55.64271 * 18 17 16 20 20 C 1.54956 * 110.31113 * 177.83422 * 18 17 16 21 21 C 1.55307 * 100.94201 * 155.35940 * 20 18 17 22 22 C 1.54379 * 102.25260 * 325.86794 * 21 20 18 23 23 O 1.43241 * 107.59123 * 21.35791 * 22 21 20 24 24 N 1.28716 * 108.26628 * 359.97438 * 16 15 14 25 25 N 1.28630 * 110.17715 * 359.72513 * 24 16 15 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 29 29 H 0.97003 * 119.99476 * 180.02562 * 7 6 4 30 30 H 1.00903 * 110.99887 * 208.95238 * 12 2 1 31 31 H 1.09003 * 109.47035 * 299.99864 * 13 12 2 32 32 H 1.09003 * 109.47106 * 59.99614 * 13 12 2 33 33 H 1.07999 * 126.91328 * 359.96221 * 15 14 13 34 34 H 1.08998 * 109.47243 * 244.99725 * 17 16 15 35 35 H 1.09001 * 109.46993 * 4.99729 * 17 16 15 36 36 H 1.08994 * 111.12286 * 273.28258 * 20 18 17 37 37 H 1.09000 * 111.11765 * 37.44153 * 20 18 17 38 38 H 1.08999 * 110.84666 * 207.67526 * 21 20 18 39 39 H 1.09003 * 111.02211 * 84.13652 * 21 20 18 40 40 H 1.08994 * 109.83542 * 261.84230 * 22 21 20 41 41 H 1.09006 * 109.90365 * 140.90905 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5874 -0.5218 -3.5559 15 6 1.8370 -1.1035 -4.5206 16 7 2.7094 -1.6501 -5.3986 17 6 2.3556 -2.3894 -6.6129 18 6 3.0458 -1.7494 -7.8190 19 1 4.1227 -1.7025 -7.6570 20 6 2.7282 -2.5494 -9.1075 21 6 2.9280 -1.4547 -10.1909 22 6 2.4462 -0.1815 -9.4629 23 8 2.5193 -0.4340 -8.0549 24 7 3.9038 -1.4089 -4.9837 25 7 3.8654 -0.7325 -3.8902 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.7093 1.1617 3.4844 30 1 2.9173 -1.1205 -1.0286 31 1 1.0871 0.6163 -2.5525 32 1 2.7589 1.0462 -2.1181 33 1 0.7587 -1.1275 -4.5775 34 1 2.6808 -3.4251 -6.5154 35 1 1.2752 -2.3596 -6.7545 36 1 3.4321 -3.3702 -9.2438 37 1 1.7005 -2.9126 -9.1009 38 1 2.3112 -1.6581 -11.0662 39 1 3.9781 -1.3680 -10.4701 40 1 1.4170 0.0393 -9.7460 41 1 3.0893 0.6598 -9.7216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:14 Heat of formation + Delta-G solvation = 26.515221 kcal Electronic energy + Delta-G solvation = -21415.230507 eV Core-core repulsion = 18138.317313 eV Total energy + Delta-G solvation = -3276.913194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.17225 -40.47755 -37.86685 -35.91499 -34.63797 -33.17478 -32.51981 -31.49721 -30.01031 -27.40866 -27.26330 -26.10284 -23.49229 -22.72901 -22.53613 -21.77416 -21.33333 -18.73949 -18.30007 -17.74858 -17.41173 -16.88723 -16.62993 -16.05947 -15.91542 -15.62388 -15.35967 -14.91778 -14.47395 -14.20754 -13.98288 -13.76323 -13.51763 -13.18321 -12.90690 -12.74540 -12.71858 -12.54249 -12.41852 -12.24740 -12.19899 -12.16054 -11.90318 -11.78609 -11.68792 -11.02590 -10.88070 -10.57393 -10.55495 -10.13070 -9.08455 -8.12063 -6.25726 0.70095 1.42882 1.43140 1.47160 1.53064 1.55333 2.43196 2.70629 3.16379 3.35687 3.42777 3.52778 3.83640 3.85381 3.94510 4.02255 4.10930 4.22816 4.27388 4.36189 4.39237 4.57947 4.72235 4.79127 4.84338 4.87609 4.92537 4.99123 5.04396 5.12546 5.18660 5.22905 5.24367 5.51158 5.67830 5.71714 5.89045 5.98245 6.25328 6.44626 6.73471 6.96159 7.44046 7.55277 8.93617 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046997 B = 0.002778 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.635483 B =10076.432474 C =10300.823294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.962 3.038 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.270 1.270 12 N -0.676 5.676 13 C 0.150 3.850 14 C -0.030 4.030 15 C -0.015 4.015 16 N -0.279 5.279 17 C 0.108 3.892 18 C 0.063 3.937 19 H 0.067 0.933 20 C -0.137 4.137 21 C -0.149 4.149 22 C 0.040 3.960 23 O -0.409 6.409 24 N -0.111 5.111 25 N -0.307 5.307 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.057 0.943 29 H 0.263 0.737 30 H 0.328 0.672 31 H 0.095 0.905 32 H 0.021 0.979 33 H 0.224 0.776 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -7.715 -28.122 29.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.011 1.011 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.194 1.194 12 N -0.307 5.307 13 C 0.019 3.981 14 C -0.169 4.169 15 C -0.167 4.167 16 N -0.072 5.072 17 C -0.012 4.012 18 C 0.005 3.995 19 H 0.085 0.915 20 C -0.175 4.175 21 C -0.187 4.187 22 C -0.036 4.036 23 O -0.329 6.329 24 N -0.090 5.090 25 N -0.174 5.174 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.113 0.887 32 H 0.039 0.961 33 H 0.240 0.760 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.351 -7.901 -28.321 29.404 hybrid contribution 0.185 0.605 1.300 1.446 sum -0.167 -7.295 -27.020 27.988 Atomic orbital electron populations 1.21529 0.96900 0.99136 0.99467 1.18972 0.93280 0.90769 0.86375 1.01138 1.21566 1.31701 1.12692 0.91796 0.92774 1.25703 0.95159 0.95730 1.01908 1.70017 1.37347 1.23923 1.24207 0.85496 0.78007 0.78971 0.78771 1.20323 1.20441 1.19433 1.60763 1.32043 1.32742 1.05160 1.20037 0.99790 0.91903 0.86359 1.21980 0.89647 1.05488 0.99773 1.23760 0.99908 1.01398 0.91649 1.47502 1.04357 1.36012 1.19352 1.22839 1.04354 0.96202 0.77773 1.23382 0.97642 0.83367 0.95144 0.91511 1.23275 1.05097 0.98436 0.90650 1.23118 1.03213 0.93004 0.99348 1.23331 1.01952 0.98642 0.79687 1.88486 1.85481 1.33625 1.25340 1.78049 1.05338 1.16720 1.08932 1.74967 1.21235 1.13940 1.07269 0.95113 0.95083 0.92402 0.92750 0.85544 0.88657 0.96119 0.75970 0.84540 0.84158 0.87461 0.87773 0.87526 0.90292 0.90076 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.59 9.19 71.98 0.66 -4.92 16 2 C 0.21 11.35 2.60 44.17 0.11 11.46 16 3 H -0.03 -1.69 7.80 -2.39 -0.02 -1.71 16 4 C -0.54 -30.89 8.59 25.60 0.22 -30.67 16 5 H 0.05 3.09 7.62 -2.91 -0.02 3.07 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -53.65 11.32 21.45 0.24 -53.41 16 8 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.68 -30.94 6.29 -499.46 -3.14 -34.09 16 13 C 0.15 5.94 6.04 85.55 0.52 6.45 16 14 C -0.03 -1.09 6.76 41.59 0.28 -0.81 16 15 C -0.02 -0.42 11.50 83.49 0.96 0.54 16 16 N -0.28 -7.17 3.42 -347.74 -1.19 -8.36 16 17 C 0.11 1.49 6.17 86.38 0.53 2.02 16 18 C 0.06 0.92 3.51 31.26 0.11 1.03 16 19 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 20 C -0.14 -0.83 6.57 32.06 0.21 -0.62 16 21 C -0.15 -1.03 7.02 31.85 0.22 -0.80 16 22 C 0.04 0.51 7.79 72.45 0.56 1.08 16 23 O -0.41 -8.30 11.02 -148.98 -1.64 -9.95 16 24 N -0.11 -3.80 12.86 37.02 0.48 -3.32 16 25 N -0.31 -12.22 12.41 -48.60 -0.60 -12.83 16 26 H 0.03 1.32 7.45 -2.39 -0.02 1.31 16 27 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 3.16 6.07 -2.38 -0.01 3.15 16 29 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.33 15.72 8.22 -89.69 -0.74 14.98 16 31 H 0.10 3.41 7.44 -2.39 -0.02 3.39 16 32 H 0.02 0.88 8.06 -2.39 -0.02 0.87 16 33 H 0.22 4.28 8.06 -2.91 -0.02 4.26 16 34 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.14 1.12 8.07 -2.39 -0.02 1.10 16 36 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.10 0.27 8.06 -2.39 -0.02 0.25 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.84 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -74.64 339.41 1.30 -73.34 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.29 Total: 15.78 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.85 Total: -13.97 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.22 Total: -112.00 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -1.64 Total: -9.95 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.64 1.30 -73.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.858 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds