Wall clock time and date at job start Tue Mar 31 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46755 * 2 1 4 4 C 1.50698 * 109.47031 * 119.99707 * 2 1 3 5 5 H 1.08001 * 119.99649 * 119.99724 * 4 2 1 6 6 C 1.37874 * 120.00440 * 299.99692 * 4 2 1 7 7 N 1.31516 * 120.00169 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99755 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47375 * 90.00025 * 8 6 4 10 10 H 1.48500 * 109.47378 * 209.99814 * 8 6 4 11 11 H 1.48503 * 109.47188 * 329.99664 * 8 6 4 12 12 N 1.46898 * 109.46901 * 239.99746 * 2 1 3 13 13 C 1.46904 * 110.99951 * 85.00175 * 12 2 1 14 14 C 1.50701 * 109.47159 * 179.97438 * 13 12 2 15 15 C 1.35349 * 126.75044 * 95.29717 * 14 13 12 16 16 N 1.35311 * 106.17207 * 180.12814 * 15 14 13 17 17 C 1.46505 * 125.86532 * 179.90472 * 16 15 14 18 18 C 1.52997 * 109.47212 * 124.71073 * 17 16 15 19 19 H 1.09000 * 109.82544 * 305.57015 * 18 17 16 20 20 C 1.54379 * 109.83254 * 184.58789 * 18 17 16 21 21 C 1.55313 * 102.25252 * 219.12826 * 20 18 17 22 22 C 1.54953 * 100.93976 * 34.13279 * 21 20 18 23 23 O 1.43239 * 109.83027 * 66.44884 * 18 17 16 24 24 N 1.28709 * 108.26388 * 359.63478 * 16 15 14 25 25 N 1.28629 * 110.18046 * 0.23240 * 24 16 15 26 26 H 1.08995 * 109.47150 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46540 * 300.00527 * 1 2 3 28 28 H 1.09000 * 109.46936 * 59.99830 * 1 2 3 29 29 H 0.97000 * 119.99464 * 179.97438 * 7 6 4 30 30 H 1.00898 * 110.99934 * 208.95423 * 12 2 1 31 31 H 1.09002 * 109.47375 * 59.99793 * 13 12 2 32 32 H 1.09005 * 109.46786 * 299.99912 * 13 12 2 33 33 H 1.08005 * 126.91760 * 0.02562 * 15 14 13 34 34 H 1.09002 * 109.47068 * 244.71133 * 17 16 15 35 35 H 1.09001 * 109.47372 * 4.71220 * 17 16 15 36 36 H 1.08993 * 110.84821 * 337.31660 * 20 18 17 37 37 H 1.08994 * 110.84800 * 100.94120 * 20 18 17 38 38 H 1.08995 * 111.12270 * 276.21442 * 21 20 18 39 39 H 1.09003 * 111.15893 * 152.06598 * 21 20 18 40 40 H 1.09000 * 110.30802 * 204.63699 * 22 21 20 41 41 H 1.08996 * 110.30484 * 82.46929 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6999 10 1 0.9760 1.9953 3.9067 11 1 0.8472 2.1766 1.4920 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5884 -0.5216 -3.5557 15 6 1.8389 -1.0990 -4.5236 16 7 2.7122 -1.6492 -5.3987 17 6 2.3593 -2.3872 -6.6141 18 6 3.0505 -1.7458 -7.8189 19 1 2.8066 -0.6844 -7.8633 20 6 2.5944 -2.4448 -9.1177 21 6 3.9100 -2.5009 -9.9413 22 6 4.9546 -2.6974 -8.8138 23 8 4.4690 -1.9142 -7.7119 24 7 3.9061 -1.4078 -4.9828 25 7 3.8667 -0.7371 -3.8859 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9033 -0.5278 4.4375 30 1 2.9173 -1.1206 -1.0287 31 1 2.7588 1.0462 -2.1183 32 1 1.0870 0.6163 -2.5525 33 1 0.7608 -1.1183 -4.5844 34 1 2.6847 -3.4230 -6.5175 35 1 1.2791 -2.3574 -6.7566 36 1 2.2245 -3.4485 -8.9087 37 1 1.8393 -1.8512 -9.6330 38 1 4.0794 -1.5659 -10.4752 39 1 3.9087 -3.3478 -10.6276 40 1 5.9308 -2.3342 -9.1350 41 1 5.0149 -3.7489 -8.5331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:16 Heat of formation + Delta-G solvation = 33.448490 kcal Electronic energy + Delta-G solvation = -21482.184517 eV Core-core repulsion = 18205.571973 eV Total energy + Delta-G solvation = -3276.612545 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.13746 -40.45448 -38.01592 -35.85097 -34.62820 -33.14480 -32.82927 -31.43682 -30.49952 -27.34429 -27.25639 -26.11900 -23.48159 -22.59312 -22.46889 -21.77639 -21.43067 -18.97135 -18.17194 -17.84290 -17.46166 -17.24881 -16.67331 -15.93703 -15.62993 -15.59313 -15.28799 -15.08134 -14.63816 -14.40070 -14.17072 -13.91582 -13.65580 -13.32580 -13.10356 -12.75530 -12.65313 -12.62851 -12.37940 -12.22890 -12.10526 -12.04110 -11.77599 -11.69499 -11.41964 -11.11233 -11.02252 -10.75802 -10.47790 -10.11121 -9.17301 -8.29908 -6.35424 0.74529 1.33004 1.38951 1.49785 1.51268 1.57967 2.33385 2.87958 3.05333 3.33063 3.46351 3.57290 3.70752 3.82185 3.91125 4.03444 4.14322 4.25273 4.25908 4.38038 4.51422 4.56608 4.62537 4.71054 4.78560 4.81271 4.87352 4.92522 4.92937 5.00813 5.05494 5.07803 5.20686 5.24646 5.52233 5.67556 5.76080 5.98158 6.10248 6.44628 6.63244 6.77542 7.30859 7.63367 8.87112 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.051560 B = 0.002839 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.921151 B = 9859.748018 C =10082.900327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.185 3.815 3 H -0.001 1.001 4 C -0.528 4.528 5 H 0.032 0.968 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.959 3.041 9 H -0.260 1.260 10 H -0.300 1.300 11 H -0.247 1.247 12 N -0.673 5.673 13 C 0.146 3.854 14 C -0.035 4.035 15 C -0.022 4.022 16 N -0.284 5.284 17 C 0.094 3.906 18 C 0.064 3.936 19 H 0.076 0.924 20 C -0.136 4.136 21 C -0.149 4.149 22 C 0.035 3.965 23 O -0.395 6.395 24 N -0.095 5.095 25 N -0.318 5.318 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.267 0.733 30 H 0.330 0.670 31 H 0.027 0.973 32 H 0.110 0.890 33 H 0.234 0.766 34 H 0.106 0.894 35 H 0.161 0.839 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -2.135 -32.122 32.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.076 3.924 3 H 0.016 0.984 4 C -0.566 4.566 5 H 0.050 0.950 6 C -0.187 4.187 7 N -0.590 5.590 8 Si 0.786 3.214 9 H -0.186 1.186 10 H -0.228 1.228 11 H -0.170 1.170 12 N -0.304 5.304 13 C 0.015 3.985 14 C -0.174 4.174 15 C -0.173 4.173 16 N -0.078 5.078 17 C -0.025 4.025 18 C 0.005 3.995 19 H 0.094 0.906 20 C -0.174 4.174 21 C -0.187 4.187 22 C -0.041 4.041 23 O -0.315 6.315 24 N -0.074 5.074 25 N -0.185 5.185 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.045 0.955 32 H 0.128 0.872 33 H 0.250 0.750 34 H 0.124 0.876 35 H 0.179 0.821 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.722 -2.520 -32.265 32.706 hybrid contribution -0.188 0.830 1.159 1.438 sum -4.910 -1.690 -31.106 31.537 Atomic orbital electron populations 1.21966 0.96299 1.01282 0.99431 1.19428 0.93465 0.92135 0.87413 0.98382 1.21414 1.31518 1.12639 0.91076 0.94985 1.25894 0.97367 1.00365 0.95116 1.70061 1.47644 1.42594 0.98662 0.85698 0.79147 0.79346 0.77257 1.18554 1.22787 1.17048 1.60610 1.32579 1.32525 1.04681 1.20179 1.00634 0.91802 0.85859 1.22085 0.89655 1.05751 0.99888 1.23918 1.00086 1.01447 0.91883 1.47636 1.04448 1.36040 1.19709 1.23130 1.04267 0.96171 0.78938 1.23138 0.81904 1.00015 0.94406 0.90606 1.23140 0.98933 1.02861 0.92477 1.23270 0.93395 1.04201 0.97796 1.23618 0.98741 0.95750 0.85989 1.88686 1.21229 1.73460 1.48081 1.78366 1.05294 1.15797 1.07989 1.75050 1.21554 1.14420 1.07461 0.92886 0.94988 0.91400 0.92428 0.85381 0.95505 0.87206 0.75007 0.87555 0.82140 0.87987 0.87351 0.90316 0.87616 0.89959 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.89 71.98 0.64 -4.82 16 2 C 0.18 8.82 2.19 44.17 0.10 8.91 16 3 H 0.00 -0.07 6.86 -2.39 -0.02 -0.08 16 4 C -0.53 -31.22 9.17 25.60 0.23 -30.98 16 5 H 0.03 2.12 7.86 -2.91 -0.02 2.10 16 6 C 0.01 0.59 5.45 84.65 0.46 1.05 16 7 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 8 Si 0.96 45.41 24.37 68.60 1.67 47.08 16 9 H -0.26 -11.49 6.87 99.48 0.68 -10.80 16 10 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 11 H -0.25 -10.77 6.53 99.48 0.65 -10.12 16 12 N -0.67 -28.83 6.29 -499.44 -3.14 -31.97 16 13 C 0.15 5.07 6.05 85.56 0.52 5.59 16 14 C -0.04 -1.17 6.76 41.60 0.28 -0.89 16 15 C -0.02 -0.52 11.50 83.49 0.96 0.44 16 16 N -0.28 -6.96 3.44 -347.72 -1.20 -8.15 16 17 C 0.09 1.21 6.03 86.38 0.52 1.73 16 18 C 0.06 0.86 3.71 31.06 0.12 0.97 16 19 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 20 C -0.14 -0.67 6.54 31.86 0.21 -0.46 16 21 C -0.15 -1.00 7.16 32.06 0.23 -0.77 16 22 C 0.04 0.48 7.78 72.65 0.57 1.04 16 23 O -0.39 -8.54 10.15 -148.98 -1.51 -10.06 16 24 N -0.10 -3.32 12.18 37.02 0.45 -2.87 16 25 N -0.32 -12.50 12.41 -48.60 -0.60 -13.11 16 26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.03 1.35 3.27 -2.38 -0.01 1.34 16 28 H 0.07 2.24 7.45 -2.39 -0.02 2.22 16 29 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.33 15.73 8.22 -89.70 -0.74 14.99 16 31 H 0.03 1.00 8.06 -2.39 -0.02 0.98 16 32 H 0.11 3.11 7.44 -2.38 -0.02 3.09 16 33 H 0.23 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.16 0.51 8.07 -2.39 -0.02 0.49 16 36 H 0.10 0.16 7.85 -2.39 -0.02 0.14 16 37 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -82.20 331.10 1.01 -81.19 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.21 Total: 16.61 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.83 Total: -18.19 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -4.19 Total: -116.64 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -1.51 Total: -10.06 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.67 Total: 47.08 kcal Total: -82.20 1.01 -81.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.638 kcal (2) G-P(sol) polarization free energy of solvation -82.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds