Wall clock time and date at job start Tue Mar 31 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47620 * 2 1 4 4 C 1.50704 * 109.47128 * 240.00085 * 2 1 3 5 5 H 1.07995 * 120.00157 * 275.00477 * 4 2 1 6 6 C 1.37875 * 119.99936 * 95.00246 * 4 2 1 7 7 N 1.31510 * 120.00069 * 184.91608 * 6 4 2 8 8 Si 1.86802 * 119.99951 * 4.91349 * 6 4 2 9 9 H 1.48500 * 109.47079 * 84.83255 * 8 6 4 10 10 H 1.48496 * 109.47078 * 204.82956 * 8 6 4 11 11 H 1.48505 * 109.47190 * 324.83229 * 8 6 4 12 12 N 1.46900 * 109.47196 * 120.00266 * 2 1 3 13 13 C 1.46898 * 110.99892 * 275.00193 * 12 2 1 14 14 C 1.50705 * 109.46730 * 179.97438 * 13 12 2 15 15 C 1.35353 * 126.75153 * 95.24755 * 14 13 12 16 16 N 1.35312 * 106.17514 * 180.12191 * 15 14 13 17 17 C 1.46506 * 125.86732 * 179.90521 * 16 15 14 18 18 C 1.52998 * 109.46893 * 124.71321 * 17 16 15 19 19 H 1.08997 * 109.82688 * 305.56750 * 18 17 16 20 20 C 1.54380 * 109.82852 * 184.58375 * 18 17 16 21 21 C 1.55303 * 102.25724 * 219.13065 * 20 18 17 22 22 C 1.54948 * 100.93802 * 34.13270 * 21 20 18 23 23 O 1.43239 * 109.83086 * 66.45552 * 18 17 16 24 24 N 1.28709 * 108.26474 * 359.63893 * 16 15 14 25 25 N 1.28635 * 110.17705 * 0.22799 * 24 16 15 26 26 H 1.09001 * 109.47511 * 55.05198 * 1 2 3 27 27 H 1.09001 * 109.47643 * 175.05134 * 1 2 3 28 28 H 1.09003 * 109.47512 * 295.05184 * 1 2 3 29 29 H 0.97004 * 120.00200 * 179.97438 * 7 6 4 30 30 H 1.00902 * 111.00249 * 151.04547 * 12 2 1 31 31 H 1.08997 * 109.47642 * 60.00267 * 13 12 2 32 32 H 1.08997 * 109.46864 * 299.99580 * 13 12 2 33 33 H 1.08005 * 126.91287 * 0.02562 * 15 14 13 34 34 H 1.09001 * 109.46719 * 244.71295 * 17 16 15 35 35 H 1.09002 * 109.46906 * 4.71249 * 17 16 15 36 36 H 1.09004 * 110.85042 * 337.32047 * 20 18 17 37 37 H 1.09003 * 110.84557 * 100.93825 * 20 18 17 38 38 H 1.08996 * 111.12732 * 276.21902 * 21 20 18 39 39 H 1.09004 * 111.16365 * 152.06587 * 21 20 18 40 40 H 1.09004 * 110.31215 * 204.63730 * 22 21 20 41 41 H 1.09004 * 110.31098 * 82.47468 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3135 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3991 -3.6927 11 1 1.1985 2.3275 -1.4449 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5873 -0.5221 3.5560 15 6 3.8658 -0.5788 3.9966 16 7 3.8490 -1.3575 5.1031 17 6 5.0106 -1.7067 5.9247 18 6 4.7444 -1.3111 7.3785 19 1 4.4705 -0.2574 7.4307 20 6 6.0055 -1.5692 8.2307 21 6 5.4032 -2.1179 9.5529 22 6 4.1765 -2.8974 9.0160 23 8 3.6874 -2.1151 7.9151 24 7 2.6363 -1.7340 5.3129 25 7 1.8593 -1.2526 4.4078 26 1 -0.3634 0.5887 -0.8423 27 1 -0.3634 -1.0238 -0.0886 28 1 -0.3634 0.4352 0.9310 29 1 2.9363 -0.1047 -4.2556 30 1 2.9173 -1.1206 1.0287 31 1 1.0870 0.6161 2.5526 32 1 2.7588 1.0460 2.1182 33 1 4.7266 -0.1003 3.5532 34 1 5.1868 -2.7808 5.8668 35 1 5.8882 -1.1742 5.5581 36 1 6.6472 -2.3133 7.7587 37 1 6.5504 -0.6420 8.4080 38 1 5.0951 -1.3055 10.2111 39 1 6.1027 -2.7849 10.0570 40 1 3.4130 -2.9808 9.7896 41 1 4.4778 -3.8871 8.6726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:18 Heat of formation + Delta-G solvation = 54.185496 kcal Electronic energy + Delta-G solvation = -21499.379499 eV Core-core repulsion = 18223.666179 eV Total energy + Delta-G solvation = -3275.713321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.97647 -39.88579 -36.24459 -34.76485 -32.73966 -32.55131 -31.23271 -30.65434 -28.80376 -26.60658 -25.46359 -24.42781 -22.70717 -22.03374 -21.42443 -20.53567 -19.62790 -17.58184 -17.21022 -16.78414 -16.70586 -15.87165 -15.22868 -14.75670 -14.50657 -14.21940 -13.89066 -13.68556 -13.68116 -13.51753 -12.76840 -12.45588 -12.26095 -12.21932 -11.98505 -11.65761 -11.60521 -11.42427 -11.31219 -10.99998 -10.70807 -10.59563 -10.52032 -10.27444 -10.10134 -9.77906 -9.65754 -9.03886 -8.84316 -8.58112 -7.35602 -6.09771 -4.10139 1.81805 2.38364 2.88565 3.25097 3.34864 3.37693 3.38419 3.88825 4.04522 4.28058 4.33547 4.39132 4.59219 4.67310 4.76391 4.78868 5.02256 5.05454 5.14111 5.20566 5.25460 5.34604 5.35367 5.42890 5.58713 5.59656 5.73353 6.06830 6.27964 6.43757 6.54070 6.61087 6.76060 6.77255 6.90357 6.96063 7.48233 7.67246 7.99771 8.44021 8.68902 8.86713 9.00634 9.54296 11.03337 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038845 B = 0.002995 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.638852 B = 9347.792459 C = 9581.507776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.181 3.819 3 H 0.004 0.996 4 C -0.516 4.516 5 H 0.080 0.920 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.676 5.676 13 C 0.139 3.861 14 C 0.001 3.999 15 C -0.063 4.063 16 N -0.295 5.295 17 C 0.106 3.894 18 C 0.070 3.930 19 H 0.087 0.913 20 C -0.148 4.148 21 C -0.156 4.156 22 C 0.045 3.955 23 O -0.352 6.352 24 N -0.065 5.065 25 N -0.258 5.258 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.339 0.661 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.185 0.815 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.701 0.532 25.343 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 H 0.022 0.978 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.309 5.309 13 C 0.008 3.992 14 C -0.137 4.137 15 C -0.213 4.213 16 N -0.090 5.090 17 C -0.016 4.016 18 C 0.011 3.989 19 H 0.105 0.895 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.031 4.031 23 O -0.270 6.270 24 N -0.045 5.045 25 N -0.125 5.125 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.202 0.798 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.993 -0.515 26.139 27.648 hybrid contribution 2.018 2.076 -0.965 3.051 sum 11.011 1.561 25.174 27.521 Atomic orbital electron populations 1.21840 0.97910 1.00867 0.97815 1.19577 0.92636 0.92364 0.88107 0.97815 1.21087 1.43436 0.95942 0.95019 0.90240 1.25035 0.94442 0.98211 0.95316 1.69905 1.46153 1.35794 1.01641 0.86883 0.78973 0.86564 0.77270 1.20395 1.21444 1.18828 1.60661 1.33101 1.32494 1.04601 1.20186 1.00260 0.92204 0.86560 1.22090 0.90107 1.01981 0.99479 1.23391 1.01295 1.03611 0.92973 1.47185 1.08703 1.33465 1.19604 1.22534 0.85002 1.03659 0.90384 1.22998 0.88409 0.96520 0.90998 0.89495 1.23135 0.97009 1.02924 0.95589 1.23280 0.97897 1.00752 0.97383 1.23457 0.95900 0.94662 0.89125 1.88720 1.32510 1.57699 1.48086 1.78469 0.86797 1.19453 1.19767 1.75128 1.25659 1.10262 1.01464 0.94100 0.92901 0.95829 0.92596 0.84222 0.90022 0.94566 0.79761 0.88091 0.86864 0.89806 0.89351 0.90180 0.89619 0.89459 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.42 37.15 0.35 -2.53 16 2 C 0.18 4.36 2.26 -68.86 -0.16 4.20 16 3 H 0.00 0.10 4.95 -51.93 -0.26 -0.16 16 4 C -0.52 -14.50 8.84 -34.44 -0.30 -14.80 16 5 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 8 Si 0.88 21.30 26.99 -169.99 -4.59 16.71 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.26 -6.20 6.82 56.52 0.39 -5.81 16 12 N -0.68 -14.64 6.29 -109.22 -0.69 -15.33 16 13 C 0.14 2.55 6.04 -4.97 -0.03 2.52 16 14 C 0.00 0.02 6.76 -82.78 -0.56 -0.54 16 15 C -0.06 -0.86 11.50 -17.05 -0.20 -1.06 16 16 N -0.30 -3.97 3.44 -61.26 -0.21 -4.18 16 17 C 0.11 0.87 6.03 -4.04 -0.02 0.85 16 18 C 0.07 0.55 3.71 -26.01 -0.10 0.45 16 19 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.15 -0.65 6.54 -24.79 -0.16 -0.81 16 21 C -0.16 -0.72 7.16 -24.48 -0.18 -0.89 16 22 C 0.05 0.32 7.78 38.19 0.30 0.62 16 23 O -0.35 -3.86 10.15 -35.23 -0.36 -4.22 16 24 N -0.07 -1.14 12.18 60.35 0.73 -0.41 16 25 N -0.26 -5.04 12.41 33.29 0.41 -4.62 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.02 0.48 7.36 -51.93 -0.38 0.10 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.34 7.34 8.34 -39.29 -0.33 7.01 16 31 H 0.08 1.53 7.36 -51.93 -0.38 1.14 16 32 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 0.52 8.07 -51.93 -0.42 0.11 16 36 H 0.08 0.27 7.85 -51.93 -0.41 -0.14 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -35.01 337.64 -6.38 -41.39 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.40 Total: 2.03 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.15 Total: -10.02 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 1.02 Total: -50.99 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.36 Total: -4.22 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.59 Total: 16.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.01 -6.38 -41.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.575 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds