Wall clock time and date at job start Tue Mar 31 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47620 * 2 1 4 4 C 1.50704 * 109.47128 * 240.00085 * 2 1 3 5 5 H 1.07995 * 120.00157 * 275.00477 * 4 2 1 6 6 C 1.37875 * 119.99936 * 95.00246 * 4 2 1 7 7 N 1.31510 * 120.00069 * 184.91608 * 6 4 2 8 8 Si 1.86802 * 119.99951 * 4.91349 * 6 4 2 9 9 H 1.48500 * 109.47079 * 84.83255 * 8 6 4 10 10 H 1.48496 * 109.47078 * 204.82956 * 8 6 4 11 11 H 1.48505 * 109.47190 * 324.83229 * 8 6 4 12 12 N 1.46900 * 109.47196 * 120.00266 * 2 1 3 13 13 C 1.46898 * 110.99892 * 275.00193 * 12 2 1 14 14 C 1.50705 * 109.46730 * 179.97438 * 13 12 2 15 15 C 1.35353 * 126.75153 * 95.24755 * 14 13 12 16 16 N 1.35312 * 106.17514 * 180.12191 * 15 14 13 17 17 C 1.46506 * 125.86732 * 179.90521 * 16 15 14 18 18 C 1.52998 * 109.46893 * 124.71321 * 17 16 15 19 19 H 1.08997 * 109.82688 * 305.56750 * 18 17 16 20 20 C 1.54380 * 109.82852 * 184.58375 * 18 17 16 21 21 C 1.55303 * 102.25724 * 219.13065 * 20 18 17 22 22 C 1.54948 * 100.93802 * 34.13270 * 21 20 18 23 23 O 1.43239 * 109.83086 * 66.45552 * 18 17 16 24 24 N 1.28709 * 108.26474 * 359.63893 * 16 15 14 25 25 N 1.28635 * 110.17705 * 0.22799 * 24 16 15 26 26 H 1.09001 * 109.47511 * 55.05198 * 1 2 3 27 27 H 1.09001 * 109.47643 * 175.05134 * 1 2 3 28 28 H 1.09003 * 109.47512 * 295.05184 * 1 2 3 29 29 H 0.97004 * 120.00200 * 179.97438 * 7 6 4 30 30 H 1.00902 * 111.00249 * 151.04547 * 12 2 1 31 31 H 1.08997 * 109.47642 * 60.00267 * 13 12 2 32 32 H 1.08997 * 109.46864 * 299.99580 * 13 12 2 33 33 H 1.08005 * 126.91287 * 0.02562 * 15 14 13 34 34 H 1.09001 * 109.46719 * 244.71295 * 17 16 15 35 35 H 1.09002 * 109.46906 * 4.71249 * 17 16 15 36 36 H 1.09004 * 110.85042 * 337.32047 * 20 18 17 37 37 H 1.09003 * 110.84557 * 100.93825 * 20 18 17 38 38 H 1.08996 * 111.12732 * 276.21902 * 21 20 18 39 39 H 1.09004 * 111.16365 * 152.06587 * 21 20 18 40 40 H 1.09004 * 110.31215 * 204.63730 * 22 21 20 41 41 H 1.09004 * 110.31098 * 82.47468 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3135 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3991 -3.6927 11 1 1.1985 2.3275 -1.4449 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5873 -0.5221 3.5560 15 6 3.8658 -0.5788 3.9966 16 7 3.8490 -1.3575 5.1031 17 6 5.0106 -1.7067 5.9247 18 6 4.7444 -1.3111 7.3785 19 1 4.4705 -0.2574 7.4307 20 6 6.0055 -1.5692 8.2307 21 6 5.4032 -2.1179 9.5529 22 6 4.1765 -2.8974 9.0160 23 8 3.6874 -2.1151 7.9151 24 7 2.6363 -1.7340 5.3129 25 7 1.8593 -1.2526 4.4078 26 1 -0.3634 0.5887 -0.8423 27 1 -0.3634 -1.0238 -0.0886 28 1 -0.3634 0.4352 0.9310 29 1 2.9363 -0.1047 -4.2556 30 1 2.9173 -1.1206 1.0287 31 1 1.0870 0.6161 2.5526 32 1 2.7588 1.0460 2.1182 33 1 4.7266 -0.1003 3.5532 34 1 5.1868 -2.7808 5.8668 35 1 5.8882 -1.1742 5.5581 36 1 6.6472 -2.3133 7.7587 37 1 6.5504 -0.6420 8.4080 38 1 5.0951 -1.3055 10.2111 39 1 6.1027 -2.7849 10.0570 40 1 3.4130 -2.9808 9.7896 41 1 4.4778 -3.8871 8.6726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:18 Heat of formation + Delta-G solvation = 27.069766 kcal Electronic energy + Delta-G solvation = -21500.555326 eV Core-core repulsion = 18223.666179 eV Total energy + Delta-G solvation = -3276.889147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.13323 -40.45849 -37.94307 -35.82309 -34.58023 -33.14719 -32.82974 -31.41974 -30.37028 -27.43837 -27.24673 -26.07886 -23.48133 -22.56540 -22.45278 -21.60959 -21.46321 -19.16614 -18.22866 -17.86718 -17.45815 -16.95504 -16.66780 -15.90572 -15.68467 -15.33362 -15.21492 -15.14734 -14.57655 -14.47505 -14.22893 -13.91939 -13.46275 -13.21380 -12.88067 -12.79232 -12.65532 -12.57997 -12.42147 -12.27851 -12.16710 -12.08809 -11.79005 -11.77301 -11.62374 -11.10590 -11.00567 -10.74022 -10.47753 -10.11719 -9.03483 -8.28517 -6.35110 0.72420 1.35847 1.39587 1.50591 1.50884 1.59428 2.35761 2.87354 3.05128 3.34003 3.47649 3.56802 3.71997 3.82037 3.90633 4.07372 4.13283 4.23058 4.25305 4.37116 4.51915 4.55676 4.56352 4.72813 4.81104 4.87057 4.91944 4.92359 5.00205 5.02310 5.05636 5.12421 5.21344 5.24831 5.53494 5.71528 5.74728 6.05615 6.09754 6.57015 6.70487 6.86442 7.34556 7.65493 8.88349 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038845 B = 0.002995 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.638852 B = 9347.792459 C = 9581.507776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.187 3.813 3 H 0.014 0.986 4 C -0.521 4.521 5 H 0.031 0.969 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.260 1.260 10 H -0.288 1.288 11 H -0.246 1.246 12 N -0.687 5.687 13 C 0.145 3.855 14 C -0.030 4.030 15 C -0.038 4.038 16 N -0.283 5.283 17 C 0.094 3.906 18 C 0.065 3.935 19 H 0.076 0.924 20 C -0.137 4.137 21 C -0.149 4.149 22 C 0.035 3.965 23 O -0.394 6.394 24 N -0.095 5.095 25 N -0.304 5.304 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.267 0.733 30 H 0.337 0.663 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.978 2.605 26.985 30.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 H 0.032 0.968 4 C -0.560 4.560 5 H 0.050 0.950 6 C -0.183 4.183 7 N -0.586 5.586 8 Si 0.768 3.232 9 H -0.185 1.185 10 H -0.214 1.214 11 H -0.170 1.170 12 N -0.319 5.319 13 C 0.014 3.986 14 C -0.169 4.169 15 C -0.189 4.189 16 N -0.077 5.077 17 C -0.026 4.026 18 C 0.006 3.994 19 H 0.094 0.906 20 C -0.175 4.175 21 C -0.186 4.186 22 C -0.041 4.041 23 O -0.314 6.314 24 N -0.074 5.074 25 N -0.171 5.171 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.246 0.754 34 H 0.125 0.875 35 H 0.176 0.824 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.271 1.534 27.845 30.079 hybrid contribution 1.361 1.298 -1.397 2.343 sum 12.633 2.832 26.447 29.446 Atomic orbital electron populations 1.21781 0.97214 1.00122 0.99077 1.19426 0.93121 0.92301 0.87329 0.96809 1.21242 1.43514 0.94051 0.97188 0.95022 1.25933 0.93899 1.03874 0.94551 1.70061 1.47777 1.38146 1.02629 0.85778 0.80230 0.79565 0.77619 1.18518 1.21422 1.16997 1.60533 1.33174 1.33521 1.04698 1.20121 1.00690 0.92193 0.85554 1.22091 0.91674 1.03381 0.99746 1.23942 1.01169 1.01874 0.91957 1.47609 1.08775 1.31833 1.19503 1.23124 0.84437 1.04853 0.90146 1.23122 0.89485 0.95508 0.91269 0.90626 1.23143 0.95521 1.04375 0.94442 1.23267 0.96996 1.00705 0.97673 1.23620 0.97069 0.94919 0.88469 1.88683 1.34836 1.58499 1.49337 1.78386 0.88430 1.20610 1.20002 1.75054 1.27576 1.11743 1.02734 0.94040 0.94539 0.93456 0.92387 0.84504 0.90748 0.92144 0.75431 0.87500 0.82387 0.88041 0.87429 0.90284 0.87619 0.89852 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 9.42 71.98 0.68 -4.87 16 2 C 0.19 8.82 2.26 44.17 0.10 8.92 16 3 H 0.01 0.64 4.95 -2.39 -0.01 0.63 16 4 C -0.52 -29.79 8.84 25.60 0.23 -29.57 16 5 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 6 C 0.02 0.89 5.47 84.65 0.46 1.35 16 7 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 8 Si 0.94 42.91 26.99 68.60 1.85 44.76 16 9 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.25 -10.44 6.82 99.48 0.68 -9.76 16 12 N -0.69 -29.41 6.29 -499.48 -3.14 -32.55 16 13 C 0.15 5.08 6.04 85.56 0.52 5.60 16 14 C -0.03 -1.01 6.76 41.60 0.28 -0.73 16 15 C -0.04 -0.94 11.50 83.49 0.96 0.02 16 16 N -0.28 -7.07 3.44 -347.71 -1.20 -8.26 16 17 C 0.09 1.27 6.03 86.38 0.52 1.79 16 18 C 0.06 0.90 3.71 31.06 0.12 1.01 16 19 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 20 C -0.14 -0.74 6.54 31.85 0.21 -0.53 16 21 C -0.15 -1.03 7.16 32.05 0.23 -0.80 16 22 C 0.04 0.48 7.78 72.65 0.56 1.04 16 23 O -0.39 -8.55 10.15 -148.98 -1.51 -10.06 16 24 N -0.10 -3.32 12.18 37.02 0.45 -2.87 16 25 N -0.30 -11.99 12.41 -48.60 -0.60 -12.59 16 26 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.87 7.36 -2.39 -0.02 1.85 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.34 14.54 8.34 -89.69 -0.75 13.79 16 31 H 0.07 2.69 7.36 -2.39 -0.02 2.67 16 32 H 0.06 1.83 8.05 -2.39 -0.02 1.81 16 33 H 0.23 3.40 8.06 -2.91 -0.02 3.37 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.16 0.67 8.07 -2.39 -0.02 0.65 16 36 H 0.10 0.22 7.85 -2.38 -0.02 0.20 16 37 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -79.74 337.64 1.26 -78.48 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.25 Total: 18.13 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.87 Total: -16.76 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -4.19 Total: -114.55 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.51 Total: -10.06 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.85 Total: 44.76 kcal Total: -79.74 1.26 -78.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.552 kcal (2) G-P(sol) polarization free energy of solvation -79.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds