Wall clock time and date at job start Tue Mar 31 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 5 5 H 1.08005 * 119.99735 * 240.00290 * 4 2 1 6 6 C 1.37879 * 120.00295 * 60.00270 * 4 2 1 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99693 * 8 6 4 11 11 H 1.48501 * 109.46777 * 239.99619 * 8 6 4 12 12 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 13 13 C 1.46901 * 110.99870 * 274.99984 * 12 2 1 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 2 15 15 C 1.35349 * 126.75364 * 94.99957 * 14 13 12 16 16 N 1.35318 * 106.17397 * 179.97438 * 15 14 13 17 17 C 1.46495 * 125.86636 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.47154 * 125.00284 * 17 16 15 19 19 H 1.09004 * 110.27410 * 55.63743 * 18 17 16 20 20 C 1.54946 * 110.30842 * 177.83040 * 18 17 16 21 21 C 1.55307 * 100.93747 * 155.36064 * 20 18 17 22 22 C 1.54380 * 102.25502 * 325.86610 * 21 20 18 23 23 O 1.43243 * 107.58698 * 21.35674 * 22 21 20 24 24 N 1.28714 * 108.26445 * 0.02562 * 16 15 14 25 25 N 1.28638 * 110.17686 * 359.71367 * 24 16 15 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 30 30 H 1.00901 * 110.99869 * 151.04696 * 12 2 1 31 31 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 32 32 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 33 33 H 1.07993 * 126.91328 * 0.03507 * 15 14 13 34 34 H 1.09001 * 109.47170 * 245.00136 * 17 16 15 35 35 H 1.08998 * 109.47508 * 5.00254 * 17 16 15 36 36 H 1.08994 * 111.13034 * 273.27657 * 20 18 17 37 37 H 1.09000 * 111.12368 * 37.44528 * 20 18 17 38 38 H 1.09006 * 110.84700 * 207.67963 * 21 20 18 39 39 H 1.08992 * 111.02450 * 84.13720 * 21 20 18 40 40 H 1.09003 * 109.83391 * 261.84730 * 22 21 20 41 41 H 1.09002 * 109.90797 * 140.91565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1875 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5885 -0.5214 3.5557 15 6 3.8680 -0.5811 3.9930 16 7 3.8514 -1.3553 5.1027 17 6 5.0137 -1.7044 5.9232 18 6 4.7487 -1.3089 7.3773 19 1 3.8300 -1.7745 7.7340 20 6 5.9449 -1.7192 8.2727 21 6 5.7923 -0.7142 9.4470 22 6 5.2496 0.5430 8.7339 23 8 4.6629 0.1199 7.4976 24 7 2.6390 -1.7333 5.3127 25 7 1.8605 -1.2482 4.4109 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7090 1.1613 -3.4844 30 1 2.9173 -1.1205 1.0288 31 1 2.7589 1.0462 2.1182 32 1 1.0871 0.6164 2.5525 33 1 4.7288 -0.1056 3.5467 34 1 5.1901 -2.7785 5.8652 35 1 5.8909 -1.1718 5.5559 36 1 5.8415 -2.7472 8.6197 37 1 6.8921 -1.5752 7.7530 38 1 6.7573 -0.5106 9.9112 39 1 5.0784 -1.0803 10.1847 40 1 6.0660 1.2379 8.5370 41 1 4.4952 1.0255 9.3553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:21 Heat of formation + Delta-G solvation = 52.335604 kcal Electronic energy + Delta-G solvation = -21415.901824 eV Core-core repulsion = 18140.108286 eV Total energy + Delta-G solvation = -3275.793538 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.95512 -39.89661 -36.07724 -34.78452 -32.81660 -32.63518 -30.92881 -30.68497 -28.23464 -26.56826 -25.35981 -24.38671 -22.70088 -22.10036 -21.48183 -20.41873 -19.68516 -17.68554 -17.09186 -16.65490 -16.29395 -15.79071 -15.24106 -14.91262 -14.61439 -14.08807 -13.85543 -13.68495 -13.58155 -13.34777 -12.91446 -12.39683 -12.29464 -11.93036 -11.81782 -11.75087 -11.44554 -11.32606 -11.11816 -10.86020 -10.72879 -10.43848 -10.19532 -10.09037 -10.04752 -9.95684 -9.70426 -8.90737 -8.71374 -8.43096 -7.18684 -5.98392 -4.04447 1.84006 2.39194 2.91764 3.25419 3.31362 3.39224 3.43533 3.88826 4.02111 4.34213 4.42296 4.44373 4.58497 4.66644 4.73579 4.86157 4.91607 5.15543 5.17417 5.25424 5.32710 5.34333 5.37553 5.41405 5.57483 5.73103 5.81754 6.20877 6.39725 6.51091 6.57457 6.78455 6.98371 7.24887 7.31806 7.57937 7.83014 7.96524 8.34288 8.45374 8.71909 8.85189 9.06504 9.61157 11.08008 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.002835 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.593699 B = 9874.550545 C =10121.611188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.681 5.681 13 C 0.142 3.858 14 C 0.003 3.997 15 C -0.048 4.048 16 N -0.292 5.292 17 C 0.121 3.879 18 C 0.068 3.932 19 H 0.091 0.909 20 C -0.149 4.149 21 C -0.154 4.154 22 C 0.049 3.951 23 O -0.374 6.374 24 N -0.096 5.096 25 N -0.250 5.250 26 H 0.006 0.994 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.861 -2.294 22.858 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.312 5.312 13 C 0.011 3.989 14 C -0.136 4.136 15 C -0.198 4.198 16 N -0.086 5.086 17 C -0.001 4.001 18 C 0.009 3.991 19 H 0.109 0.891 20 C -0.187 4.187 21 C -0.192 4.192 22 C -0.027 4.027 23 O -0.293 6.293 24 N -0.075 5.075 25 N -0.117 5.117 26 H 0.025 0.975 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.202 0.798 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.131 -3.097 23.651 26.760 hybrid contribution 2.086 0.586 -1.514 2.643 sum 14.217 -2.510 22.137 26.429 Atomic orbital electron populations 1.21715 0.97729 0.99516 0.99398 1.19131 0.92800 0.92293 0.85288 0.97995 1.21293 1.31324 1.12413 0.90415 0.92215 1.24919 0.95104 0.95021 0.99009 1.69912 1.36703 1.22920 1.23306 0.86470 0.78596 0.79576 0.82916 1.19810 1.20977 1.21155 1.60703 1.32077 1.32957 1.05483 1.20144 1.00372 0.92081 0.86297 1.22145 0.89940 1.01926 0.99549 1.23339 1.01269 1.02957 0.92271 1.47066 1.08428 1.33553 1.19505 1.22224 0.85427 1.02976 0.89518 1.23333 0.99409 0.82905 0.93440 0.89143 1.23265 0.98426 1.00828 0.96157 1.23110 1.02637 0.95220 0.98233 1.23156 0.97639 0.96572 0.85338 1.88524 1.81178 1.20501 1.39123 1.78193 0.87111 1.20973 1.21209 1.75064 1.25255 1.10081 1.01328 0.97474 0.90142 0.94891 0.93004 0.85366 0.94480 0.89978 0.79799 0.87172 0.87251 0.89081 0.89728 0.89658 0.90194 0.91101 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.19 37.16 0.34 -2.92 16 2 C 0.21 5.51 2.60 -68.86 -0.18 5.33 16 3 H 0.00 0.07 7.80 -51.93 -0.40 -0.34 16 4 C -0.52 -14.38 8.59 -34.44 -0.30 -14.67 16 5 H 0.06 1.65 7.62 -52.48 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.68 -15.39 6.29 -109.22 -0.69 -16.07 16 13 C 0.14 2.79 6.05 -4.98 -0.03 2.76 16 14 C 0.00 0.05 6.76 -82.78 -0.56 -0.51 16 15 C -0.05 -0.69 11.50 -17.04 -0.20 -0.89 16 16 N -0.29 -3.99 3.42 -61.27 -0.21 -4.20 16 17 C 0.12 1.00 6.17 -4.04 -0.02 0.98 16 18 C 0.07 0.56 3.51 -25.70 -0.09 0.47 16 19 H 0.09 0.87 8.05 -51.93 -0.42 0.46 16 20 C -0.15 -0.69 6.57 -24.48 -0.16 -0.85 16 21 C -0.15 -0.72 7.02 -24.78 -0.17 -0.90 16 22 C 0.05 0.35 7.79 37.88 0.30 0.65 16 23 O -0.37 -4.01 11.02 -35.23 -0.39 -4.40 16 24 N -0.10 -1.65 12.86 60.35 0.78 -0.87 16 25 N -0.25 -4.97 12.41 33.29 0.41 -4.55 16 26 H 0.01 0.15 7.45 -51.93 -0.39 -0.24 16 27 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.33 7.18 8.22 -39.29 -0.32 6.86 16 31 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.08 1.68 7.44 -51.93 -0.39 1.30 16 33 H 0.18 2.03 8.06 -52.49 -0.42 1.60 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.67 8.07 -51.93 -0.42 0.25 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.30 8.06 -51.93 -0.42 -0.12 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.42 15.07 5.11 5.11 Total: -1.00 -34.00 339.42 -6.95 -40.95 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.41 Total: 1.60 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.17 Total: -8.94 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.92 Total: -50.78 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.39 Total: -4.40 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.00 -6.95 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.287 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds