Wall clock time and date at job start Tue Mar 31 2020 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 5 5 H 1.08005 * 119.99735 * 240.00290 * 4 2 1 6 6 C 1.37879 * 120.00295 * 60.00270 * 4 2 1 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99693 * 8 6 4 11 11 H 1.48501 * 109.46777 * 239.99619 * 8 6 4 12 12 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 13 13 C 1.46901 * 110.99870 * 274.99984 * 12 2 1 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 2 15 15 C 1.35349 * 126.75364 * 94.99957 * 14 13 12 16 16 N 1.35318 * 106.17397 * 179.97438 * 15 14 13 17 17 C 1.46495 * 125.86636 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.47154 * 125.00284 * 17 16 15 19 19 H 1.09004 * 110.27410 * 55.63743 * 18 17 16 20 20 C 1.54946 * 110.30842 * 177.83040 * 18 17 16 21 21 C 1.55307 * 100.93747 * 155.36064 * 20 18 17 22 22 C 1.54380 * 102.25502 * 325.86610 * 21 20 18 23 23 O 1.43243 * 107.58698 * 21.35674 * 22 21 20 24 24 N 1.28714 * 108.26445 * 0.02562 * 16 15 14 25 25 N 1.28638 * 110.17686 * 359.71367 * 24 16 15 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 30 30 H 1.00901 * 110.99869 * 151.04696 * 12 2 1 31 31 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 32 32 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 33 33 H 1.07993 * 126.91328 * 0.03507 * 15 14 13 34 34 H 1.09001 * 109.47170 * 245.00136 * 17 16 15 35 35 H 1.08998 * 109.47508 * 5.00254 * 17 16 15 36 36 H 1.08994 * 111.13034 * 273.27657 * 20 18 17 37 37 H 1.09000 * 111.12368 * 37.44528 * 20 18 17 38 38 H 1.09006 * 110.84700 * 207.67963 * 21 20 18 39 39 H 1.08992 * 111.02450 * 84.13720 * 21 20 18 40 40 H 1.09003 * 109.83391 * 261.84730 * 22 21 20 41 41 H 1.09002 * 109.90797 * 140.91565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1875 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5885 -0.5214 3.5557 15 6 3.8680 -0.5811 3.9930 16 7 3.8514 -1.3553 5.1027 17 6 5.0137 -1.7044 5.9232 18 6 4.7487 -1.3089 7.3773 19 1 3.8300 -1.7745 7.7340 20 6 5.9449 -1.7192 8.2727 21 6 5.7923 -0.7142 9.4470 22 6 5.2496 0.5430 8.7339 23 8 4.6629 0.1199 7.4976 24 7 2.6390 -1.7333 5.3127 25 7 1.8605 -1.2482 4.4109 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7090 1.1613 -3.4844 30 1 2.9173 -1.1205 1.0288 31 1 2.7589 1.0462 2.1182 32 1 1.0871 0.6164 2.5525 33 1 4.7288 -0.1056 3.5467 34 1 5.1901 -2.7785 5.8652 35 1 5.8909 -1.1718 5.5559 36 1 5.8415 -2.7472 8.6197 37 1 6.8921 -1.5752 7.7530 38 1 6.7573 -0.5106 9.9112 39 1 5.0784 -1.0803 10.1847 40 1 6.0660 1.2379 8.5370 41 1 4.4952 1.0255 9.3553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:20 Heat of formation + Delta-G solvation = 27.229537 kcal Electronic energy + Delta-G solvation = -21416.990505 eV Core-core repulsion = 18140.108286 eV Total energy + Delta-G solvation = -3276.882219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.16840 -40.48172 -37.87617 -35.90883 -34.64948 -33.17883 -32.52700 -31.48893 -30.00705 -27.45916 -27.24161 -26.10396 -23.50982 -22.68380 -22.53397 -21.78586 -21.40045 -18.77324 -18.27893 -17.75343 -17.41817 -16.85996 -16.62417 -16.08192 -15.79464 -15.47772 -15.38869 -15.16715 -14.51145 -14.23322 -14.00170 -13.66763 -13.59429 -13.07832 -12.86834 -12.74258 -12.70084 -12.66533 -12.43346 -12.21131 -12.19451 -12.16933 -11.96010 -11.75957 -11.62857 -11.01856 -10.87002 -10.56537 -10.56105 -10.14574 -9.02021 -8.10773 -6.24719 0.68730 1.43216 1.45314 1.47461 1.54860 1.57795 2.44243 2.70264 3.17926 3.35665 3.43652 3.52404 3.75711 3.85845 3.95460 4.08691 4.10183 4.19281 4.27825 4.35315 4.38118 4.56755 4.70861 4.78697 4.82478 4.88796 4.92699 4.98791 5.01537 5.11607 5.19111 5.23230 5.23736 5.48662 5.69232 5.71083 5.87088 5.97850 6.23822 6.49317 6.78053 7.02017 7.45373 7.58099 8.95425 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.002835 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.593699 B = 9874.550545 C =10121.611188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.218 3.782 3 H -0.020 1.020 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.684 5.684 13 C 0.150 3.850 14 C -0.027 4.027 15 C -0.027 4.027 16 N -0.278 5.278 17 C 0.108 3.892 18 C 0.063 3.937 19 H 0.067 0.933 20 C -0.137 4.137 21 C -0.149 4.149 22 C 0.040 3.960 23 O -0.409 6.409 24 N -0.113 5.113 25 N -0.297 5.297 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.334 0.666 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.224 0.776 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.775 -3.212 23.482 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 H -0.003 1.003 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.316 5.316 13 C 0.019 3.981 14 C -0.166 4.166 15 C -0.179 4.179 16 N -0.071 5.071 17 C -0.012 4.012 18 C 0.005 3.995 19 H 0.085 0.915 20 C -0.175 4.175 21 C -0.187 4.187 22 C -0.036 4.036 23 O -0.329 6.329 24 N -0.092 5.092 25 N -0.164 5.164 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.240 0.760 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.060 -4.035 24.326 28.894 hybrid contribution 1.228 0.908 -1.585 2.201 sum 16.288 -3.127 22.741 28.147 Atomic orbital electron populations 1.21573 0.98159 0.98646 0.99008 1.18923 0.92466 0.91201 0.86450 1.00265 1.21576 1.31648 1.12612 0.91464 0.92278 1.25743 0.95182 0.95694 1.02045 1.70033 1.37468 1.24087 1.24143 0.85408 0.78047 0.78588 0.78953 1.19082 1.20843 1.20359 1.60571 1.32518 1.33477 1.04992 1.19984 1.00000 0.92170 0.85919 1.21988 0.91547 1.03425 0.99653 1.23802 1.00963 1.01524 0.91650 1.47500 1.08652 1.31775 1.19210 1.22837 0.84253 1.05182 0.88909 1.23384 1.00184 0.82000 0.93981 0.91487 1.23272 0.97433 1.01548 0.95204 1.23118 1.03535 0.93902 0.98128 1.23332 0.97717 0.97976 0.84591 1.88485 1.81882 1.21893 1.40688 1.78086 0.88478 1.21603 1.21012 1.74993 1.27125 1.11637 1.02599 0.96198 0.92130 0.95816 0.92804 0.84811 0.92934 0.91752 0.75953 0.84517 0.84196 0.87446 0.87798 0.87540 0.90269 0.90110 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.15 9.19 71.98 0.66 -5.48 16 2 C 0.22 11.49 2.60 44.17 0.11 11.61 16 3 H -0.02 -1.14 7.80 -2.38 -0.02 -1.16 16 4 C -0.53 -29.88 8.59 25.60 0.22 -29.66 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 8 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.68 -31.10 6.29 -499.46 -3.14 -34.24 16 13 C 0.15 5.92 6.05 85.56 0.52 6.43 16 14 C -0.03 -0.97 6.76 41.60 0.28 -0.69 16 15 C -0.03 -0.74 11.50 83.49 0.96 0.23 16 16 N -0.28 -7.10 3.42 -347.74 -1.19 -8.29 16 17 C 0.11 1.47 6.17 86.38 0.53 2.00 16 18 C 0.06 0.92 3.51 31.26 0.11 1.03 16 19 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 20 C -0.14 -0.82 6.57 32.05 0.21 -0.61 16 21 C -0.15 -1.03 7.02 31.86 0.22 -0.80 16 22 C 0.04 0.52 7.79 72.45 0.56 1.08 16 23 O -0.41 -8.31 11.02 -148.98 -1.64 -9.96 16 24 N -0.11 -3.86 12.86 37.02 0.48 -3.38 16 25 N -0.30 -11.97 12.41 -48.60 -0.60 -12.57 16 26 H 0.02 0.95 7.45 -2.38 -0.02 0.93 16 27 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 28 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.33 14.47 8.22 -89.69 -0.74 13.73 16 31 H 0.05 1.89 8.06 -2.39 -0.02 1.87 16 32 H 0.06 2.72 7.44 -2.39 -0.02 2.70 16 33 H 0.22 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.14 1.09 8.07 -2.39 -0.02 1.07 16 36 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.10 0.27 8.06 -2.39 -0.02 0.25 16 38 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -75.21 339.42 1.30 -73.91 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.29 Total: 15.68 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.85 Total: -13.74 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -4.22 Total: -111.72 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.64 Total: -9.96 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -75.21 1.30 -73.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.137 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds