Wall clock time and date at job start Tue Mar 31 2020 01:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31611 * 120.00081 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99814 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47483 * 90.00178 * 11 9 7 13 13 H 1.48498 * 109.47011 * 210.00042 * 11 9 7 14 14 H 1.48502 * 109.47495 * 329.99664 * 11 9 7 15 15 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 16 16 C 1.34775 * 119.99699 * 85.00331 * 15 2 1 17 17 O 1.21281 * 120.00101 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00148 * 180.02562 * 16 15 2 19 19 C 1.50703 * 109.47319 * 180.02562 * 18 16 15 20 20 C 1.39869 * 126.03703 * 269.69033 * 19 18 16 21 21 N 1.30839 * 108.19799 * 179.81398 * 20 19 18 22 22 N 1.40084 * 108.20681 * 0.44238 * 21 20 19 23 23 C 1.46497 * 126.03744 * 179.69647 * 22 21 20 24 24 C 1.34944 * 107.92671 * 359.71528 * 22 21 20 25 25 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 26 26 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 27 27 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 29 29 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 30 30 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 31 31 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 32 32 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 33 33 H 0.97008 * 120.00329 * 179.97438 * 10 9 7 34 34 H 0.97002 * 120.00479 * 265.00508 * 15 2 1 35 35 H 1.09008 * 109.46987 * 300.00114 * 18 16 15 36 36 H 1.08991 * 109.46864 * 59.99809 * 18 16 15 37 37 H 1.07997 * 125.89763 * 0.02562 * 20 19 18 38 38 H 1.09013 * 109.47100 * 270.02410 * 23 22 21 39 39 H 1.09003 * 109.47338 * 30.01842 * 23 22 21 40 40 H 1.08991 * 109.47492 * 150.02582 * 23 22 21 41 41 H 1.07998 * 126.12830 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3955 -1.3449 2.7769 8 1 6.0940 -0.8648 2.1076 9 6 5.8586 -2.0037 3.9076 10 7 7.1488 -2.0429 4.1642 11 14 4.6504 -2.8347 5.0648 12 1 4.4406 -4.2407 4.6354 13 1 5.1949 -2.8152 6.4462 14 1 3.3552 -2.1089 5.0330 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6488 -0.7289 -3.5878 19 6 2.7002 0.2396 -4.7412 20 6 1.6679 0.4917 -5.6507 21 7 2.0848 1.3932 -6.5024 22 7 3.4011 1.7362 -6.1675 23 6 4.2443 2.7064 -6.8702 24 6 3.7553 1.0147 -5.0835 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 1.7515 -1.7716 1.2056 29 1 1.6053 -0.2618 2.1370 30 1 3.8532 0.4367 1.3574 31 1 3.9993 -1.0730 0.4260 32 1 3.4256 -1.7352 3.1112 33 1 7.4725 -2.5031 4.9545 34 1 2.2490 -1.6319 -1.1526 35 1 3.6480 -1.1216 -3.3986 36 1 1.9759 -1.5506 -3.8325 37 1 0.6937 0.0256 -5.6479 38 1 4.8037 2.1994 -7.6566 39 1 3.6168 3.4804 -7.3120 40 1 4.9399 3.1612 -6.1651 41 1 4.7100 1.0493 -4.5797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699089421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:23 Heat of formation + Delta-G solvation = 47.245426 kcal Electronic energy + Delta-G solvation = -21231.566907 eV Core-core repulsion = 17955.552642 eV Total energy + Delta-G solvation = -3276.014265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.35105 -39.57618 -36.59192 -34.47297 -33.77071 -32.27861 -31.63858 -30.71500 -28.43497 -28.20908 -25.94220 -23.92953 -21.79978 -21.23702 -21.19329 -20.50880 -20.00466 -17.66020 -17.01959 -16.94189 -16.03976 -15.49313 -15.15080 -14.60499 -14.51492 -14.20743 -13.94314 -13.64368 -13.51020 -13.26895 -13.12768 -12.85146 -12.65435 -12.61272 -12.41781 -12.01356 -11.83634 -11.51876 -11.21324 -10.89422 -10.73265 -10.71025 -10.49046 -10.15169 -9.74321 -9.60746 -9.52731 -8.97932 -8.87058 -8.49378 -7.24622 -5.78211 -3.13894 1.77273 2.38026 2.61642 2.79504 3.35897 3.38370 3.43975 3.44014 4.32837 4.57633 4.70354 4.76864 4.87822 4.89670 4.94892 5.13184 5.13511 5.17303 5.28328 5.29437 5.50312 5.50897 5.63857 5.65754 5.67247 5.82680 5.94780 5.97112 5.99446 6.17814 6.26109 6.50673 6.57734 6.71256 6.78301 6.85750 7.56388 7.64674 7.98280 8.38703 8.40822 9.20065 9.92390 10.12222 11.40293 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.003130 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.308305 B = 8944.211967 C = 9787.050130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.139 4.139 5 C 0.158 3.842 6 N -0.758 5.758 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.724 5.724 16 C 0.512 3.488 17 O -0.537 6.537 18 C -0.062 4.062 19 C -0.219 4.219 20 C 0.062 3.938 21 N -0.302 5.302 22 N -0.378 5.378 23 C 0.103 3.897 24 C 0.070 3.930 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.027 0.973 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.401 0.599 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.180 0.820 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.137 3.528 -19.706 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.106 0.894 4 C -0.177 4.177 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.374 4.374 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.376 5.376 16 C 0.298 3.702 17 O -0.413 6.413 18 C -0.103 4.103 19 C -0.230 4.230 20 C -0.124 4.124 21 N -0.124 5.124 22 N -0.160 5.160 23 C -0.039 4.039 24 C -0.076 4.076 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.235 0.765 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.197 0.803 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.285 5.267 -20.875 24.307 hybrid contribution -0.327 -1.551 1.785 2.387 sum -11.613 3.716 -19.090 22.652 Atomic orbital electron populations 1.22157 0.95593 1.01869 1.02256 1.20898 0.93455 0.97715 0.83819 0.89419 1.22111 0.98007 1.00792 0.96807 1.20608 0.90226 0.95929 0.90104 1.42731 1.05245 1.66343 1.26016 1.19065 0.82169 1.29196 1.07005 0.89307 1.24687 0.95616 1.00712 0.98251 1.69703 1.11719 1.48114 1.28755 0.86518 0.80935 0.79759 0.81123 1.21087 1.21739 1.20330 1.46147 1.67594 1.14189 1.09662 1.20709 0.77537 0.87493 0.84422 1.90692 1.49607 1.16056 1.84992 1.19911 1.03606 0.96883 0.89903 1.19406 0.94963 1.06775 1.01888 1.23684 0.99549 0.96008 0.93157 1.77308 0.92404 1.18069 1.24571 1.48368 1.10937 1.33178 1.23495 1.21837 0.93532 0.91071 0.97427 1.22297 1.00572 0.94257 0.90471 0.91774 0.92339 0.92610 0.91436 0.90463 0.95686 0.95460 0.80716 0.93052 0.76476 0.88198 0.88248 0.80344 0.90842 0.89408 0.89438 0.80994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 2 C 0.15 1.85 2.58 -67.93 -0.17 1.68 16 3 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 4 C -0.14 -1.95 4.87 -26.73 -0.13 -2.08 16 5 C 0.16 2.97 6.15 -4.04 -0.02 2.94 16 6 N -0.76 -17.81 5.41 -59.91 -0.32 -18.13 16 7 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 11 Si 0.89 21.91 27.74 -169.99 -4.71 17.19 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 15 N -0.72 -8.21 4.53 -53.80 -0.24 -8.46 16 16 C 0.51 6.38 7.79 -10.98 -0.09 6.29 16 17 O -0.54 -8.91 15.70 5.56 0.09 -8.83 16 18 C -0.06 -0.57 6.19 -29.03 -0.18 -0.75 16 19 C -0.22 -2.43 4.59 -105.05 -0.48 -2.91 16 20 C 0.06 0.72 11.96 -17.36 -0.21 0.51 16 21 N -0.30 -3.90 12.58 30.62 0.39 -3.51 16 22 N -0.38 -4.13 4.01 -68.16 -0.27 -4.41 16 23 C 0.10 0.67 11.47 59.85 0.69 1.36 16 24 C 0.07 0.75 11.40 -17.22 -0.20 0.55 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.51 7.75 -51.93 -0.40 0.10 16 32 H 0.36 8.19 5.53 -40.82 -0.23 7.96 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.40 3.75 8.60 -40.82 -0.35 3.40 16 35 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -36.98 348.61 -6.21 -43.19 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.46 Total: 7.20 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.70 Total: -0.92 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.32 Total: -63.09 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.98 -6.21 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699089421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.435 kcal (2) G-P(sol) polarization free energy of solvation -36.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds