Wall clock time and date at job start Tue Mar 31 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00658 * 179.97438 * 16 15 14 19 19 H 1.08998 * 109.47380 * 300.00849 * 18 16 15 20 20 C 1.53006 * 109.46543 * 60.00514 * 18 16 15 21 21 N 1.46492 * 109.47684 * 180.02562 * 18 16 15 22 22 C 1.34950 * 126.04092 * 274.72063 * 21 18 16 23 23 C 1.35319 * 107.74470 * 179.83682 * 22 21 18 24 24 C 1.39871 * 107.92029 * 0.42189 * 23 22 21 25 25 N 1.30834 * 108.20211 * 359.73669 * 24 23 22 26 26 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 28 28 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 29 29 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 30 30 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 34 34 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 35 35 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 36 36 H 1.09001 * 109.47327 * 299.99969 * 20 18 16 37 37 H 1.08993 * 109.47441 * 60.00168 * 20 18 16 38 38 H 1.09006 * 109.47036 * 180.02562 * 20 18 16 39 39 H 1.07994 * 126.12389 * 0.02562 * 22 21 18 40 40 H 1.08001 * 126.03623 * 180.16086 * 23 22 21 41 41 H 1.08002 * 125.89580 * 179.71209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.0575 -1.2029 -7.0370 12 1 2.3063 0.8390 -7.4264 13 1 3.3985 -1.0764 -6.4172 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6256 -1.4434 3.7793 18 6 1.5975 0.3653 4.8933 19 1 2.0327 1.3636 4.8473 20 6 0.0727 0.4761 4.9545 21 7 2.0857 -0.3252 6.0895 22 6 1.4566 -1.3255 6.7412 23 6 2.2344 -1.6898 7.7868 24 6 3.3734 -0.8780 7.7794 25 7 3.2854 -0.0597 6.7624 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7199 -1.2950 30 1 3.1263 -0.7995 -1.2055 31 1 1.1488 0.8593 -2.3518 32 1 0.7072 1.9230 -5.4823 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7993 1.2057 35 1 1.1483 0.8592 2.3518 36 1 -0.2903 0.9902 4.0644 37 1 -0.3626 -0.5221 5.0004 38 1 -0.2154 1.0397 5.8420 39 1 0.5046 -1.7597 6.4740 40 1 2.0127 -2.4670 8.5032 41 1 4.1852 -0.9193 8.4906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753615446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:36 Heat of formation + Delta-G solvation = 49.330407 kcal Electronic energy + Delta-G solvation = -21332.449223 eV Core-core repulsion = 18056.525370 eV Total energy + Delta-G solvation = -3275.923853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49787 -39.80620 -36.96221 -34.91432 -34.43893 -32.52871 -30.36650 -30.13090 -29.59954 -26.75108 -25.70963 -24.66898 -22.63448 -21.47038 -21.23208 -20.42990 -19.70567 -17.98587 -17.39249 -16.95922 -16.03473 -15.68124 -15.03998 -14.77464 -14.56907 -14.33172 -13.90242 -13.76981 -13.65159 -13.25500 -13.04013 -12.89957 -12.79067 -12.64691 -12.37381 -12.11501 -12.01784 -11.11562 -10.95862 -10.86318 -10.75755 -10.64082 -10.50451 -10.26461 -10.04691 -9.72808 -9.53018 -9.19673 -8.90930 -8.75441 -6.95980 -5.80326 -3.08857 1.65753 2.11995 2.33414 2.72416 3.03426 3.41912 3.47370 3.48902 4.07082 4.30139 4.43369 4.56260 4.59821 4.75949 4.93522 4.99388 5.10842 5.13690 5.30099 5.33806 5.44280 5.54418 5.61468 5.72358 5.84310 5.87488 5.90410 6.02913 6.15436 6.29594 6.35744 6.46795 6.58960 6.71573 6.74960 6.80696 7.26893 7.53318 7.67689 7.95600 8.38876 9.50227 10.06830 10.41625 11.42673 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.049384 B = 0.002594 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.850479 B =10790.597174 C =11052.681580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.718 5.718 16 C 0.498 3.502 17 O -0.522 6.522 18 C 0.142 3.858 19 H 0.128 0.872 20 C -0.161 4.161 21 N -0.355 5.355 22 C 0.068 3.932 23 C -0.276 4.276 24 C 0.046 3.954 25 N -0.292 5.292 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 -1.288 24.455 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.004 3.996 15 N -0.371 5.371 16 C 0.281 3.719 17 O -0.397 6.397 18 C 0.036 3.964 19 H 0.146 0.854 20 C -0.219 4.219 21 N -0.137 5.137 22 C -0.078 4.078 23 C -0.305 4.305 24 C -0.140 4.140 25 N -0.112 5.112 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.187 0.813 40 H 0.165 0.835 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.201 -1.131 23.622 23.751 hybrid contribution -0.513 -0.361 -0.647 0.901 sum -2.714 -1.492 22.975 23.183 Atomic orbital electron populations 1.21794 0.94588 1.01967 1.01505 1.21563 0.96753 1.00555 0.94101 0.90431 1.20568 0.96647 0.94211 0.85341 1.42333 1.66837 1.27770 1.00590 1.19237 1.28735 1.05399 0.83661 0.91152 1.24740 1.01025 0.97360 0.97900 1.69655 1.43661 1.16486 1.28537 0.86172 0.78062 0.77519 0.84345 1.21701 1.21760 1.20741 1.21464 1.00327 0.95233 0.82612 1.46005 1.57511 1.27979 1.05592 1.20667 0.80283 0.86252 0.84716 1.90776 1.38707 1.23951 1.86313 1.21104 0.96748 0.97118 0.81468 0.85411 1.22169 0.90583 1.04309 1.04870 1.48176 1.15840 1.28305 1.21343 1.22415 0.99528 0.91690 0.94136 1.21463 0.97546 1.07513 1.03974 1.23872 0.98967 0.94570 0.96639 1.77362 1.00437 1.24593 1.08816 0.92782 0.93965 0.91046 0.95982 0.96120 0.78206 0.93510 0.91190 0.91218 0.76366 0.89093 0.90784 0.90069 0.81330 0.83546 0.80043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.94 37.16 0.33 -1.59 16 2 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 3 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 5 N -0.73 -18.01 5.33 -59.91 -0.32 -18.33 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.13 1.67 5.06 -4.05 -0.02 1.65 16 15 N -0.72 -7.55 5.18 -60.30 -0.31 -7.86 16 16 C 0.50 6.03 7.22 -10.99 -0.08 5.95 16 17 O -0.52 -8.84 16.42 5.56 0.09 -8.75 16 18 C 0.14 1.29 3.73 -69.08 -0.26 1.03 16 19 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 20 C -0.16 -0.86 8.73 37.16 0.32 -0.54 16 21 N -0.35 -4.06 3.02 -56.00 -0.17 -4.23 16 22 C 0.07 0.68 10.58 -17.22 -0.18 0.49 16 23 C -0.28 -2.67 10.80 -40.01 -0.43 -3.10 16 24 C 0.05 0.49 12.03 -17.37 -0.21 0.28 16 25 N -0.29 -3.84 12.58 30.62 0.39 -3.45 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.43 7.18 -51.93 -0.37 0.06 16 28 H 0.07 1.16 7.18 -51.93 -0.37 0.79 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.40 3.09 7.07 -40.82 -0.29 2.80 16 36 H 0.09 0.33 7.56 -51.93 -0.39 -0.06 16 37 H 0.07 0.40 7.16 -51.93 -0.37 0.03 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.17 1.18 7.26 -52.49 -0.38 0.80 16 40 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -35.64 344.80 -6.68 -42.32 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.23 Total: 6.82 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.02 Total: -1.87 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.31 Total: -61.02 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.64 -6.68 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.648 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds