Wall clock time and date at job start Tue Mar 31 2020 02:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47306 * 2 1 4 4 C 1.52996 * 109.46923 * 239.99557 * 2 1 3 5 5 N 1.46497 * 109.46865 * 65.00636 * 4 2 1 6 6 C 1.36939 * 119.99858 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00208 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99891 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99776 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99673 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47214 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46735 * 120.00644 * 10 8 6 13 13 H 1.48500 * 109.47009 * 240.00017 * 10 8 6 14 14 C 1.53002 * 109.46754 * 119.99810 * 2 1 3 15 15 N 1.46505 * 109.47411 * 294.99930 * 14 2 1 16 16 C 1.34778 * 119.99943 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99637 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.47374 * 59.99792 * 18 16 15 20 20 C 1.53006 * 109.47239 * 299.99654 * 18 16 15 21 21 N 1.46500 * 109.46896 * 179.97438 * 18 16 15 22 22 C 1.34952 * 126.03514 * 84.99865 * 21 18 16 23 23 C 1.35319 * 107.74422 * 179.97438 * 22 21 18 24 24 C 1.39874 * 107.91996 * 0.02562 * 23 22 21 25 25 N 1.30841 * 108.20046 * 359.73790 * 24 23 22 26 26 H 1.09000 * 109.46927 * 300.00059 * 1 2 3 27 27 H 1.09001 * 109.47198 * 59.99833 * 1 2 3 28 28 H 1.09000 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46819 * 185.00125 * 4 2 1 30 30 H 1.08999 * 109.47234 * 305.00185 * 4 2 1 31 31 H 0.97002 * 120.00298 * 359.97438 * 5 4 2 32 32 H 0.97008 * 119.99631 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46986 * 174.99838 * 14 2 1 34 34 H 1.09002 * 109.47070 * 55.00009 * 14 2 1 35 35 H 0.96994 * 119.99585 * 0.02562 * 15 14 2 36 36 H 1.09001 * 109.47002 * 60.00070 * 20 18 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 20 18 16 38 38 H 1.09000 * 109.47050 * 300.00336 * 20 18 16 39 39 H 1.07996 * 126.12920 * 0.02562 * 22 21 18 40 40 H 1.07996 * 126.03943 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.89451 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0020 -0.4204 -3.6854 7 1 2.5629 -1.3378 -3.7863 8 6 1.6344 0.2963 -4.8160 9 7 0.9503 1.4140 -4.6931 10 14 2.1105 -0.3257 -6.5119 11 1 2.8703 -1.5946 -6.3784 12 1 0.8837 -0.5658 -7.3135 13 1 2.9555 0.6886 -7.1919 14 6 2.0399 -0.7212 1.2493 15 7 1.6524 0.0354 2.4425 16 6 1.9963 -0.4131 3.6660 17 8 2.6263 -1.4432 3.7793 18 6 1.5971 0.3650 4.8933 19 1 0.5108 0.4425 4.9370 20 6 2.2063 1.7671 4.8289 21 7 2.0855 -0.3256 6.0895 22 6 3.3169 -0.2053 6.6285 23 6 3.3688 -1.0029 7.7204 24 6 2.1268 -1.6326 7.8528 25 7 1.3551 -1.2233 6.8788 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6053 -1.7199 -1.2950 31 1 1.1484 0.8591 -2.3517 32 1 0.6938 1.9150 -5.4831 33 1 3.1263 -0.7995 1.2057 34 1 1.6053 -1.7198 1.2952 35 1 1.1482 0.8591 2.3518 36 1 1.8426 2.2807 3.9389 37 1 1.9179 2.3296 5.7167 38 1 3.2926 1.6896 4.7852 39 1 4.1171 0.4168 6.2558 40 1 4.2192 -1.1313 8.3736 41 1 1.8512 -2.3326 8.6277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753615447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:39 Heat of formation + Delta-G solvation = 49.200342 kcal Electronic energy + Delta-G solvation = -21321.855925 eV Core-core repulsion = 18045.926432 eV Total energy + Delta-G solvation = -3275.929493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.49711 -39.80553 -36.96244 -34.91229 -34.44090 -32.52905 -30.36738 -30.13345 -29.58836 -26.76255 -25.69334 -24.66696 -22.63899 -21.47082 -21.23231 -20.42130 -19.72251 -17.97431 -17.38852 -16.95456 -15.96062 -15.80235 -15.00642 -14.82256 -14.50734 -14.26653 -13.94168 -13.82461 -13.67073 -13.14184 -13.07213 -12.95663 -12.78945 -12.58064 -12.39578 -12.14584 -11.98448 -11.11383 -10.96647 -10.86638 -10.76936 -10.63250 -10.50013 -10.25731 -10.02499 -9.73538 -9.52895 -9.19781 -8.91789 -8.75440 -6.96243 -5.80796 -3.09227 1.65756 2.12075 2.33304 2.72362 3.03390 3.41212 3.47377 3.49346 4.07398 4.30329 4.43198 4.55941 4.60369 4.76125 4.93500 5.00747 5.10421 5.14277 5.30606 5.34103 5.44744 5.54197 5.61703 5.73525 5.84491 5.88827 5.89339 6.03205 6.16181 6.30193 6.36425 6.46801 6.59580 6.71304 6.74981 6.80877 7.26842 7.53246 7.67921 7.95485 8.38354 9.49856 10.06490 10.41274 11.42256 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.049050 B = 0.002584 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.707090 B =10832.889650 C =10988.014237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.127 3.873 15 N -0.718 5.718 16 C 0.498 3.502 17 O -0.522 6.522 18 C 0.142 3.858 19 H 0.128 0.872 20 C -0.161 4.161 21 N -0.355 5.355 22 C 0.068 3.932 23 C -0.276 4.276 24 C 0.046 3.954 25 N -0.292 5.292 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 1.667 24.177 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.371 5.371 16 C 0.281 3.719 17 O -0.397 6.397 18 C 0.036 3.964 19 H 0.146 0.854 20 C -0.220 4.220 21 N -0.137 5.137 22 C -0.077 4.077 23 C -0.305 4.305 24 C -0.140 4.140 25 N -0.113 5.113 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.187 0.813 40 H 0.165 0.835 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.037 0.776 23.453 23.488 hybrid contribution 0.676 0.370 -0.722 1.057 sum 1.714 1.147 22.730 22.824 Atomic orbital electron populations 1.21802 0.94583 1.02047 1.01525 1.21558 0.96772 1.00489 0.94090 0.90441 1.20569 0.96623 0.94234 0.85346 1.42340 1.66923 1.27688 1.00589 1.19283 1.28605 1.05450 0.83619 0.91096 1.24742 1.00996 0.97419 0.97898 1.69665 1.43598 1.16640 1.28408 0.86105 0.77612 0.77854 0.84567 1.20530 1.21851 1.21854 1.21469 1.00240 0.95328 0.82612 1.46008 1.57527 1.27963 1.05595 1.20668 0.80425 0.86128 0.84695 1.90775 1.39021 1.23676 1.86275 1.21105 1.02306 0.91642 0.81371 0.85424 1.22173 1.02551 0.92451 1.04790 1.48177 1.09804 1.34834 1.20853 1.22421 0.89065 1.00920 0.95323 1.21463 1.00240 1.05930 1.02879 1.23871 0.92735 0.99918 0.97516 1.77357 1.20390 1.07790 1.05716 0.93922 0.91043 0.92760 0.96120 0.95976 0.78208 0.93561 0.91194 0.91210 0.76365 0.89064 0.90070 0.90772 0.81315 0.83543 0.80049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.94 37.16 0.33 -1.66 16 2 C -0.11 -1.60 2.46 -90.62 -0.22 -1.82 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 4 C 0.16 3.11 5.65 -4.05 -0.02 3.09 16 5 N -0.73 -17.97 5.33 -59.91 -0.32 -18.29 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 10 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 15 N -0.72 -7.54 5.18 -60.29 -0.31 -7.85 16 16 C 0.50 6.03 7.22 -10.99 -0.08 5.95 16 17 O -0.52 -8.83 16.42 5.56 0.09 -8.74 16 18 C 0.14 1.29 3.73 -69.08 -0.26 1.03 16 19 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.16 -0.88 8.73 37.16 0.32 -0.56 16 21 N -0.35 -4.06 3.02 -55.99 -0.17 -4.23 16 22 C 0.07 0.68 10.58 -17.22 -0.18 0.50 16 23 C -0.28 -2.68 10.80 -40.01 -0.43 -3.11 16 24 C 0.05 0.49 12.03 -17.36 -0.21 0.28 16 25 N -0.29 -3.82 12.58 30.63 0.39 -3.44 16 26 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 27 H 0.07 1.19 7.18 -51.93 -0.37 0.81 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 9.78 6.85 -40.82 -0.28 9.50 16 32 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 3.09 7.07 -40.82 -0.29 2.80 16 36 H 0.09 0.34 7.56 -51.93 -0.39 -0.05 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.41 7.16 -51.93 -0.37 0.04 16 39 H 0.17 1.20 7.26 -52.49 -0.38 0.82 16 40 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -35.58 344.81 -6.68 -42.25 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.23 Total: 6.88 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.02 Total: -1.94 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.31 Total: -60.91 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.58 -6.68 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.454 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds