Wall clock time and date at job start Tue Mar 31 2020 02:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47306 * 2 1 4 4 C 1.52996 * 109.46923 * 239.99557 * 2 1 3 5 5 N 1.46497 * 109.46865 * 65.00636 * 4 2 1 6 6 C 1.36939 * 119.99858 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00208 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99891 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99776 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99673 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47214 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46735 * 120.00644 * 10 8 6 13 13 H 1.48500 * 109.47009 * 240.00017 * 10 8 6 14 14 C 1.53002 * 109.46754 * 119.99810 * 2 1 3 15 15 N 1.46505 * 109.47411 * 294.99930 * 14 2 1 16 16 C 1.34778 * 119.99943 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99637 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.47374 * 59.99792 * 18 16 15 20 20 C 1.53006 * 109.47239 * 299.99654 * 18 16 15 21 21 N 1.46500 * 109.46896 * 179.97438 * 18 16 15 22 22 C 1.34952 * 126.03514 * 84.99865 * 21 18 16 23 23 C 1.35319 * 107.74422 * 179.97438 * 22 21 18 24 24 C 1.39874 * 107.91996 * 0.02562 * 23 22 21 25 25 N 1.30841 * 108.20046 * 359.73790 * 24 23 22 26 26 H 1.09000 * 109.46927 * 300.00059 * 1 2 3 27 27 H 1.09001 * 109.47198 * 59.99833 * 1 2 3 28 28 H 1.09000 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46819 * 185.00125 * 4 2 1 30 30 H 1.08999 * 109.47234 * 305.00185 * 4 2 1 31 31 H 0.97002 * 120.00298 * 359.97438 * 5 4 2 32 32 H 0.97008 * 119.99631 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46986 * 174.99838 * 14 2 1 34 34 H 1.09002 * 109.47070 * 55.00009 * 14 2 1 35 35 H 0.96994 * 119.99585 * 0.02562 * 15 14 2 36 36 H 1.09001 * 109.47002 * 60.00070 * 20 18 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 20 18 16 38 38 H 1.09000 * 109.47050 * 300.00336 * 20 18 16 39 39 H 1.07996 * 126.12920 * 0.02562 * 22 21 18 40 40 H 1.07996 * 126.03943 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.89451 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0020 -0.4204 -3.6854 7 1 2.5629 -1.3378 -3.7863 8 6 1.6344 0.2963 -4.8160 9 7 0.9503 1.4140 -4.6931 10 14 2.1105 -0.3257 -6.5119 11 1 2.8703 -1.5946 -6.3784 12 1 0.8837 -0.5658 -7.3135 13 1 2.9555 0.6886 -7.1919 14 6 2.0399 -0.7212 1.2493 15 7 1.6524 0.0354 2.4425 16 6 1.9963 -0.4131 3.6660 17 8 2.6263 -1.4432 3.7793 18 6 1.5971 0.3650 4.8933 19 1 0.5108 0.4425 4.9370 20 6 2.2063 1.7671 4.8289 21 7 2.0855 -0.3256 6.0895 22 6 3.3169 -0.2053 6.6285 23 6 3.3688 -1.0029 7.7204 24 6 2.1268 -1.6326 7.8528 25 7 1.3551 -1.2233 6.8788 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6053 -1.7199 -1.2950 31 1 1.1484 0.8591 -2.3517 32 1 0.6938 1.9150 -5.4831 33 1 3.1263 -0.7995 1.2057 34 1 1.6053 -1.7198 1.2952 35 1 1.1482 0.8591 2.3518 36 1 1.8426 2.2807 3.9389 37 1 1.9179 2.3296 5.7167 38 1 3.2926 1.6896 4.7852 39 1 4.1171 0.4168 6.2558 40 1 4.2192 -1.1313 8.3736 41 1 1.8512 -2.3326 8.6277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753615447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:38 Heat of formation + Delta-G solvation = 23.595190 kcal Electronic energy + Delta-G solvation = -21322.966247 eV Core-core repulsion = 18045.926432 eV Total energy + Delta-G solvation = -3277.039816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.26343 -40.77367 -38.30381 -36.04204 -35.63467 -34.08262 -31.96147 -31.01979 -30.35753 -27.86143 -27.22634 -25.65348 -24.30368 -22.43319 -21.98287 -21.55355 -20.74570 -19.30468 -18.57359 -18.13425 -17.09965 -16.77697 -16.45024 -15.90756 -15.71063 -15.46009 -15.24719 -15.01954 -14.57458 -14.44126 -14.26123 -13.75374 -13.67450 -13.59533 -13.40715 -13.28611 -12.97286 -12.84300 -12.61941 -12.21304 -12.14191 -12.01648 -11.73152 -11.67921 -11.64636 -11.21201 -10.96547 -10.36290 -10.21695 -9.51415 -9.00428 -7.96925 -5.24861 0.88155 1.38958 1.44974 1.47298 1.47612 1.57707 1.98465 2.14607 2.55598 3.37092 3.41190 3.61177 3.69659 3.80948 3.93713 3.98803 4.05348 4.14916 4.32811 4.52267 4.57501 4.62590 4.67411 4.72404 4.74419 4.88641 4.92047 5.02765 5.08993 5.10982 5.16429 5.25371 5.36369 5.46364 5.49437 5.74807 6.05371 6.26285 6.41613 6.76672 7.06643 7.33317 8.08074 8.32631 9.26623 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.049050 B = 0.002584 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.707090 B =10832.889650 C =10988.014237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.086 0.914 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.971 3.029 11 H -0.269 1.269 12 H -0.293 1.293 13 H -0.292 1.292 14 C 0.139 3.861 15 N -0.703 5.703 16 C 0.499 3.501 17 O -0.575 6.575 18 C 0.143 3.857 19 H 0.142 0.858 20 C -0.155 4.155 21 N -0.366 5.366 22 C 0.060 3.940 23 C -0.285 4.285 24 C 0.038 3.962 25 N -0.338 5.338 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.020 0.980 30 H 0.018 0.982 31 H 0.377 0.623 32 H 0.252 0.748 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.418 0.582 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.194 0.806 40 H 0.169 0.831 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 2.346 25.216 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.104 0.896 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.377 4.377 7 H 0.090 0.910 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.194 1.194 12 H -0.220 1.220 13 H -0.219 1.219 14 C 0.015 3.985 15 N -0.356 5.356 16 C 0.284 3.716 17 O -0.454 6.454 18 C 0.037 3.963 19 H 0.159 0.841 20 C -0.213 4.213 21 N -0.148 5.148 22 C -0.086 4.086 23 C -0.314 4.314 24 C -0.148 4.148 25 N -0.159 5.159 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.210 0.790 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.257 0.743 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.211 0.789 40 H 0.187 0.813 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.418 1.465 24.515 24.599 hybrid contribution 0.583 0.111 -0.981 1.146 sum 2.001 1.577 23.534 23.671 Atomic orbital electron populations 1.21748 0.93909 1.01820 1.01981 1.21329 0.97103 1.00294 0.92419 0.89606 1.20721 0.96547 0.94060 0.85786 1.42498 1.66778 1.27842 1.01284 1.19643 1.27768 1.05250 0.85089 0.90993 1.25524 1.01700 0.97932 1.01432 1.69800 1.45049 1.17839 1.29052 0.85104 0.77106 0.77605 0.80127 1.19352 1.21989 1.21875 1.21140 0.99632 0.94867 0.82880 1.45798 1.57111 1.28172 1.04515 1.21259 0.79218 0.85499 0.85636 1.90753 1.41531 1.26081 1.87036 1.21325 1.03343 0.92448 0.79145 0.84083 1.22226 1.02418 0.90168 1.06478 1.48410 1.10234 1.34900 1.21249 1.22968 0.89238 1.01066 0.95310 1.21854 1.00646 1.05613 1.03274 1.24410 0.92985 0.99901 0.97461 1.77275 1.22105 1.09378 1.07128 0.90230 0.93748 0.93352 0.96214 0.96440 0.78967 0.93926 0.91908 0.92364 0.74342 0.86928 0.88762 0.90746 0.78877 0.81335 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.94 71.98 0.64 -3.02 16 2 C -0.09 -2.58 2.46 -10.79 -0.03 -2.60 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.16 6.00 5.65 86.38 0.49 6.49 16 5 N -0.74 -36.55 5.33 -343.46 -1.83 -38.38 16 6 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 7 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 8 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 9 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 10 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 14 C 0.14 3.48 5.06 86.38 0.44 3.92 16 15 N -0.70 -13.28 5.18 -463.05 -2.40 -15.68 16 16 C 0.50 11.38 7.22 87.66 0.63 12.02 16 17 O -0.58 -19.30 16.42 -3.02 -0.05 -19.35 16 18 C 0.14 2.32 3.73 44.25 0.17 2.48 16 19 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 20 C -0.15 -1.23 8.73 71.98 0.63 -0.60 16 21 N -0.37 -7.93 3.02 -331.05 -1.00 -8.93 16 22 C 0.06 1.10 10.58 83.54 0.88 1.99 16 23 C -0.28 -5.13 10.80 21.99 0.24 -4.89 16 24 C 0.04 0.78 12.03 85.24 1.03 1.81 16 25 N -0.34 -8.68 12.58 -57.02 -0.72 -9.39 16 26 H 0.08 1.52 7.18 -2.39 -0.02 1.50 16 27 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.38 19.39 6.85 -92.71 -0.63 18.76 16 32 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.42 5.07 7.07 -92.71 -0.66 4.42 16 36 H 0.11 0.41 7.56 -2.39 -0.02 0.39 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.62 7.16 -2.39 -0.02 0.60 16 39 H 0.19 2.34 7.26 -2.91 -0.02 2.32 16 40 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -77.74 344.81 2.48 -75.26 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.26 Total: 25.21 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 6.42 Total: 1.09 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.66 Total: -130.10 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.74 2.48 -75.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.857 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds