Wall clock time and date at job start Tue Mar 31 2020 02:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46952 * 2 1 4 4 C 1.52996 * 109.47765 * 120.00880 * 2 1 3 5 5 N 1.46502 * 109.46802 * 295.00068 * 4 2 1 6 6 C 1.36934 * 119.99963 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00524 * 359.97438 * 6 5 4 8 8 C 1.38820 * 120.00154 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00049 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99645 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.47403 * 90.00314 * 10 8 6 12 12 H 1.48507 * 109.46921 * 210.00536 * 10 8 6 13 13 H 1.48502 * 109.47410 * 330.00029 * 10 8 6 14 14 C 1.53002 * 109.47005 * 240.01021 * 2 1 3 15 15 N 1.46505 * 109.47411 * 64.99561 * 14 2 1 16 16 C 1.34778 * 119.99943 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99637 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.47374 * 59.99792 * 18 16 15 20 20 C 1.53006 * 109.47239 * 299.99654 * 18 16 15 21 21 N 1.46500 * 109.46896 * 179.97438 * 18 16 15 22 22 C 1.34952 * 126.03514 * 84.99865 * 21 18 16 23 23 C 1.35319 * 107.74422 * 179.97438 * 22 21 18 24 24 C 1.39874 * 107.91996 * 0.02562 * 23 22 21 25 25 N 1.30841 * 108.20046 * 359.73790 * 24 23 22 26 26 H 1.09001 * 109.47027 * 299.99014 * 1 2 3 27 27 H 1.08993 * 109.47323 * 59.99573 * 1 2 3 28 28 H 1.09008 * 109.46877 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47114 * 54.99802 * 4 2 1 30 30 H 1.08999 * 109.47131 * 175.00176 * 4 2 1 31 31 H 0.97000 * 120.00260 * 359.97438 * 5 4 2 32 32 H 0.96998 * 119.99650 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46986 * 304.99469 * 14 2 1 34 34 H 1.09002 * 109.47070 * 184.99640 * 14 2 1 35 35 H 0.96994 * 119.99585 * 0.02562 * 15 14 2 36 36 H 1.09001 * 109.47002 * 60.00070 * 20 18 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 20 18 16 38 38 H 1.09000 * 109.47050 * 300.00336 * 20 18 16 39 39 H 1.07996 * 126.12920 * 0.02562 * 22 21 18 40 40 H 1.07996 * 126.03943 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.89451 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2490 5 7 1.6526 0.0351 2.4423 6 6 2.0022 -0.4207 3.6854 7 1 2.5633 -1.3379 3.7862 8 6 1.6345 0.2958 4.8161 9 7 1.9702 -0.1425 6.0109 10 14 0.6635 1.8820 4.6418 11 1 -0.7898 1.5780 4.6659 12 1 0.9973 2.7929 5.7662 13 1 1.0110 2.5364 3.3548 14 6 2.0400 -0.7210 -1.2494 15 7 1.6523 0.0357 -2.4425 16 6 1.9954 -0.4131 -3.6661 17 8 2.6255 -1.4432 -3.7796 18 6 1.5972 0.3656 -4.8933 19 1 2.0324 1.3639 -4.8473 20 6 0.0723 0.4765 -4.9544 21 7 2.0854 -0.3249 -6.0895 22 6 1.4587 -1.3288 -6.7381 23 6 2.2334 -1.6889 -7.7874 24 6 3.3728 -0.8777 -7.7796 25 7 3.2826 -0.0561 -6.7653 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.6056 -1.7199 1.2949 30 1 3.1264 -0.7995 1.2053 31 1 1.1490 0.8591 2.3518 32 1 1.7136 0.3584 6.8009 33 1 1.6054 -1.7196 -1.2954 34 1 3.1263 -0.7992 -1.2058 35 1 1.1487 0.8597 -2.3517 36 1 -0.2906 0.9904 -4.0643 37 1 -0.2157 1.0393 -5.8422 38 1 -0.3630 -0.5218 -5.0004 39 1 0.5087 -1.7659 -6.4684 40 1 2.0116 -2.4660 -8.5039 41 1 4.1848 -0.9195 -8.4905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753615448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:41 Heat of formation + Delta-G solvation = 53.914778 kcal Electronic energy + Delta-G solvation = -21407.001780 eV Core-core repulsion = 18131.276720 eV Total energy + Delta-G solvation = -3275.725060 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53978 -39.87413 -37.12514 -34.97086 -34.58211 -32.56427 -30.67975 -30.28054 -29.71810 -26.89485 -25.97323 -24.73809 -22.31850 -21.45573 -21.27297 -20.55002 -19.86389 -18.12391 -17.54730 -17.26626 -16.10137 -15.75192 -15.13082 -14.84067 -14.57134 -14.42709 -13.95798 -13.85482 -13.77338 -13.30520 -13.16375 -12.98756 -12.84073 -12.63991 -12.53229 -12.26212 -12.08427 -11.51501 -11.12117 -10.90125 -10.84569 -10.70492 -10.68719 -10.30350 -10.14863 -9.63072 -9.57207 -9.27712 -8.94498 -8.79332 -7.27948 -5.80282 -3.16327 1.61568 2.07552 2.27169 2.69025 2.96139 3.32099 3.33918 3.40919 4.01526 4.23966 4.37354 4.54608 4.55425 4.72043 4.76648 4.91658 4.99928 5.04932 5.14122 5.29511 5.39483 5.49389 5.57537 5.57905 5.65162 5.76329 5.79939 5.81106 5.97430 6.13077 6.23570 6.36338 6.43172 6.59383 6.67730 6.70962 7.18874 7.49578 7.88679 7.95749 8.38469 9.17061 9.88976 10.08424 11.38154 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044250 B = 0.002789 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.610938 B =10037.990431 C =10320.332761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.090 0.910 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.127 3.873 15 N -0.720 5.720 16 C 0.498 3.502 17 O -0.520 6.520 18 C 0.143 3.857 19 H 0.128 0.872 20 C -0.161 4.161 21 N -0.355 5.355 22 C 0.068 3.932 23 C -0.275 4.275 24 C 0.047 3.953 25 N -0.292 5.292 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 2.181 -27.781 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.004 3.996 15 N -0.373 5.373 16 C 0.281 3.719 17 O -0.395 6.395 18 C 0.036 3.964 19 H 0.146 0.854 20 C -0.219 4.219 21 N -0.137 5.137 22 C -0.078 4.078 23 C -0.304 4.304 24 C -0.140 4.140 25 N -0.112 5.112 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.187 0.813 40 H 0.165 0.835 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.473 2.289 -26.902 27.367 hybrid contribution -1.263 0.817 -0.245 1.524 sum -5.736 3.106 -27.147 27.920 Atomic orbital electron populations 1.21816 0.94691 1.02323 1.01223 1.21615 0.96670 1.00619 0.94506 0.90488 1.20545 0.97253 0.94243 0.84253 1.42676 1.67912 1.27073 1.02338 1.19062 1.29609 1.07109 0.81698 0.89170 1.24686 1.00798 0.98621 0.95102 1.69699 1.51209 1.40273 0.96940 0.86542 0.80414 0.84602 0.76907 1.21058 1.21687 1.20417 1.21445 1.00507 0.95264 0.82397 1.46000 1.57674 1.27956 1.05627 1.20674 0.80269 0.86265 0.84687 1.90783 1.38559 1.23890 1.86278 1.21096 0.96731 0.97113 0.81478 0.85423 1.22168 0.90605 1.04335 1.04820 1.48171 1.16125 1.28093 1.21352 1.22416 0.99564 0.91680 0.94104 1.21469 0.97560 1.07574 1.03838 1.23880 0.98927 0.94517 0.96660 1.77363 1.00470 1.24526 1.08865 0.91756 0.93681 0.92290 0.95075 0.95251 0.80637 0.93016 0.90971 0.91003 0.76447 0.89172 0.90051 0.90756 0.81323 0.83514 0.80012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.94 37.16 0.33 -1.41 16 2 C -0.11 -1.54 2.46 -90.62 -0.22 -1.76 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.16 3.03 5.65 -4.04 -0.02 3.00 16 5 N -0.75 -17.35 5.13 -59.91 -0.31 -17.66 16 6 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 10 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 14 C 0.13 1.56 5.06 -4.04 -0.02 1.54 16 15 N -0.72 -7.01 5.18 -60.29 -0.31 -7.32 16 16 C 0.50 5.74 7.22 -10.99 -0.08 5.66 16 17 O -0.52 -8.53 16.42 5.56 0.09 -8.44 16 18 C 0.14 1.22 3.73 -69.08 -0.26 0.96 16 19 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.16 -0.78 8.73 37.16 0.32 -0.45 16 21 N -0.36 -3.93 3.02 -55.99 -0.17 -4.10 16 22 C 0.07 0.65 10.58 -17.22 -0.18 0.47 16 23 C -0.28 -2.58 10.80 -40.01 -0.43 -3.02 16 24 C 0.05 0.49 12.03 -17.36 -0.21 0.28 16 25 N -0.29 -3.74 12.58 30.63 0.39 -3.35 16 26 H 0.06 0.91 7.18 -51.93 -0.37 0.54 16 27 H 0.04 0.40 7.18 -51.93 -0.37 0.03 16 28 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.36 7.98 4.71 -40.82 -0.19 7.78 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.40 2.73 7.07 -40.82 -0.29 2.44 16 36 H 0.09 0.27 7.56 -51.93 -0.39 -0.12 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.36 7.16 -51.93 -0.37 -0.01 16 39 H 0.17 1.12 7.26 -52.49 -0.38 0.74 16 40 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -36.69 341.69 -6.32 -43.01 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.19 Total: 5.97 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.02 Total: -1.76 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.37 Total: -60.87 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.69 -6.32 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.927 kcal (2) G-P(sol) polarization free energy of solvation -36.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds