Wall clock time and date at job start Tue Mar 31 2020 02:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46952 * 2 1 4 4 C 1.52996 * 109.47765 * 120.00880 * 2 1 3 5 5 N 1.46502 * 109.46802 * 295.00068 * 4 2 1 6 6 C 1.36934 * 119.99963 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00524 * 359.97438 * 6 5 4 8 8 C 1.38820 * 120.00154 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00049 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99645 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.47403 * 90.00314 * 10 8 6 12 12 H 1.48507 * 109.46921 * 210.00536 * 10 8 6 13 13 H 1.48502 * 109.47410 * 330.00029 * 10 8 6 14 14 C 1.53002 * 109.47005 * 240.01021 * 2 1 3 15 15 N 1.46505 * 109.47411 * 64.99561 * 14 2 1 16 16 C 1.34778 * 119.99943 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99637 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.47374 * 59.99792 * 18 16 15 20 20 C 1.53006 * 109.47239 * 299.99654 * 18 16 15 21 21 N 1.46500 * 109.46896 * 179.97438 * 18 16 15 22 22 C 1.34952 * 126.03514 * 84.99865 * 21 18 16 23 23 C 1.35319 * 107.74422 * 179.97438 * 22 21 18 24 24 C 1.39874 * 107.91996 * 0.02562 * 23 22 21 25 25 N 1.30841 * 108.20046 * 359.73790 * 24 23 22 26 26 H 1.09001 * 109.47027 * 299.99014 * 1 2 3 27 27 H 1.08993 * 109.47323 * 59.99573 * 1 2 3 28 28 H 1.09008 * 109.46877 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47114 * 54.99802 * 4 2 1 30 30 H 1.08999 * 109.47131 * 175.00176 * 4 2 1 31 31 H 0.97000 * 120.00260 * 359.97438 * 5 4 2 32 32 H 0.96998 * 119.99650 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46986 * 304.99469 * 14 2 1 34 34 H 1.09002 * 109.47070 * 184.99640 * 14 2 1 35 35 H 0.96994 * 119.99585 * 0.02562 * 15 14 2 36 36 H 1.09001 * 109.47002 * 60.00070 * 20 18 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 20 18 16 38 38 H 1.09000 * 109.47050 * 300.00336 * 20 18 16 39 39 H 1.07996 * 126.12920 * 0.02562 * 22 21 18 40 40 H 1.07996 * 126.03943 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.89451 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2490 5 7 1.6526 0.0351 2.4423 6 6 2.0022 -0.4207 3.6854 7 1 2.5633 -1.3379 3.7862 8 6 1.6345 0.2958 4.8161 9 7 1.9702 -0.1425 6.0109 10 14 0.6635 1.8820 4.6418 11 1 -0.7898 1.5780 4.6659 12 1 0.9973 2.7929 5.7662 13 1 1.0110 2.5364 3.3548 14 6 2.0400 -0.7210 -1.2494 15 7 1.6523 0.0357 -2.4425 16 6 1.9954 -0.4131 -3.6661 17 8 2.6255 -1.4432 -3.7796 18 6 1.5972 0.3656 -4.8933 19 1 2.0324 1.3639 -4.8473 20 6 0.0723 0.4765 -4.9544 21 7 2.0854 -0.3249 -6.0895 22 6 1.4587 -1.3288 -6.7381 23 6 2.2334 -1.6889 -7.7874 24 6 3.3728 -0.8777 -7.7796 25 7 3.2826 -0.0561 -6.7653 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.6056 -1.7199 1.2949 30 1 3.1264 -0.7995 1.2053 31 1 1.1490 0.8591 2.3518 32 1 1.7136 0.3584 6.8009 33 1 1.6054 -1.7196 -1.2954 34 1 3.1263 -0.7992 -1.2058 35 1 1.1487 0.8597 -2.3517 36 1 -0.2906 0.9904 -4.0643 37 1 -0.2157 1.0393 -5.8422 38 1 -0.3630 -0.5218 -5.0004 39 1 0.5087 -1.7659 -6.4684 40 1 2.0116 -2.4660 -8.5039 41 1 4.1848 -0.9195 -8.4905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753615448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:41 Heat of formation + Delta-G solvation = 26.454268 kcal Electronic energy + Delta-G solvation = -21408.192557 eV Core-core repulsion = 18131.276720 eV Total energy + Delta-G solvation = -3276.915837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26860 -40.78468 -38.40307 -36.12455 -35.64331 -34.14459 -32.42733 -31.03250 -30.38432 -27.90912 -27.38101 -25.60622 -23.99630 -22.43927 -21.99350 -21.65836 -20.83306 -19.67716 -18.66326 -18.14239 -17.15523 -16.68172 -16.46594 -16.02613 -15.72746 -15.56523 -15.21257 -14.96842 -14.72068 -14.43964 -14.20676 -13.99802 -13.70704 -13.62521 -13.44617 -13.27044 -13.19320 -12.87199 -12.62718 -12.27738 -12.08287 -12.00217 -11.77838 -11.70173 -11.65086 -11.22323 -10.99397 -10.36765 -10.22622 -9.51886 -9.31786 -8.03640 -5.38204 0.87583 1.36845 1.38819 1.42575 1.44787 1.49888 1.97803 2.13509 2.48365 3.27443 3.39854 3.52586 3.61192 3.80648 3.91406 3.97641 4.00316 4.10902 4.14528 4.49495 4.57807 4.63186 4.65176 4.72345 4.74810 4.88464 4.91856 5.02092 5.07925 5.09547 5.15908 5.22608 5.32274 5.45688 5.73849 5.74316 6.05307 6.19795 6.41221 6.76034 7.06739 7.07035 7.81290 8.02648 9.18046 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044250 B = 0.002789 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.610938 B =10037.990431 C =10320.332761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.088 0.912 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.051 0.949 8 C -0.068 4.068 9 N -0.986 5.986 10 Si 0.961 3.039 11 H -0.274 1.274 12 H -0.297 1.297 13 H -0.245 1.245 14 C 0.138 3.862 15 N -0.702 5.702 16 C 0.499 3.501 17 O -0.576 6.576 18 C 0.143 3.857 19 H 0.141 0.859 20 C -0.154 4.154 21 N -0.366 5.366 22 C 0.061 3.939 23 C -0.286 4.286 24 C 0.038 3.962 25 N -0.339 5.339 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.019 0.981 31 H 0.369 0.631 32 H 0.258 0.742 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.419 0.581 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.196 0.804 40 H 0.169 0.831 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 4.156 -30.107 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.107 0.893 4 C 0.031 3.969 5 N -0.399 5.399 6 C -0.370 4.370 7 H 0.069 0.931 8 C -0.259 4.259 9 N -0.636 5.636 10 Si 0.787 3.213 11 H -0.200 1.200 12 H -0.224 1.224 13 H -0.170 1.170 14 C 0.013 3.987 15 N -0.356 5.356 16 C 0.284 3.716 17 O -0.454 6.454 18 C 0.037 3.963 19 H 0.158 0.842 20 C -0.212 4.212 21 N -0.148 5.148 22 C -0.085 4.085 23 C -0.314 4.314 24 C -0.148 4.148 25 N -0.160 5.160 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.203 0.797 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.213 0.787 40 H 0.186 0.814 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.715 4.297 -29.284 30.350 hybrid contribution -0.494 0.068 0.458 0.677 sum -7.209 4.365 -28.826 30.033 Atomic orbital electron populations 1.21821 0.93100 1.02516 1.02480 1.21395 0.97790 1.00356 0.92119 0.89331 1.20703 0.96770 0.94308 0.85088 1.42604 1.67838 1.27675 1.01813 1.19024 1.28257 1.05679 0.84074 0.93094 1.25617 1.02680 1.03113 0.94501 1.69904 1.53346 1.42354 0.98010 0.85332 0.78734 0.79289 0.77963 1.20001 1.22437 1.16960 1.21136 0.99384 0.95236 0.82944 1.45768 1.57194 1.28178 1.04422 1.21269 0.79046 0.85625 0.85708 1.90762 1.41094 1.26493 1.87071 1.21346 0.99199 0.96542 0.79247 0.84175 1.22231 0.87366 1.04993 1.06644 1.48419 1.15823 1.28717 1.21857 1.22971 1.00461 0.91183 0.93873 1.21858 0.97220 1.07950 1.04420 1.24405 0.99869 0.94064 0.96468 1.77278 1.02084 1.26327 1.10301 0.93312 0.89548 0.92741 0.95708 0.96288 0.79667 0.93287 0.91622 0.92758 0.74241 0.86679 0.88861 0.90659 0.78745 0.81363 0.77826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.94 71.98 0.64 -2.32 16 2 C -0.10 -2.38 2.46 -10.79 -0.03 -2.41 16 3 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.16 5.74 5.65 86.38 0.49 6.22 16 5 N -0.75 -33.98 5.13 -343.45 -1.76 -35.74 16 6 C -0.24 -13.68 10.47 84.04 0.88 -12.80 16 7 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 8 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 9 N -0.99 -63.39 13.97 21.65 0.30 -63.08 16 10 Si 0.96 44.08 27.74 68.60 1.90 45.98 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 13 H -0.25 -9.83 6.52 99.48 0.65 -9.18 16 14 C 0.14 3.15 5.06 86.38 0.44 3.59 16 15 N -0.70 -11.73 5.18 -463.05 -2.40 -14.13 16 16 C 0.50 10.62 7.22 87.66 0.63 11.26 16 17 O -0.58 -18.72 16.42 -3.02 -0.05 -18.77 16 18 C 0.14 2.10 3.73 44.25 0.17 2.27 16 19 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 20 C -0.15 -0.91 8.73 71.98 0.63 -0.28 16 21 N -0.37 -7.58 3.02 -331.05 -1.00 -8.58 16 22 C 0.06 1.06 10.58 83.54 0.88 1.95 16 23 C -0.29 -4.96 10.80 21.99 0.24 -4.73 16 24 C 0.04 0.76 12.03 85.24 1.03 1.78 16 25 N -0.34 -8.52 12.58 -57.02 -0.72 -9.23 16 26 H 0.05 1.20 7.18 -2.39 -0.02 1.18 16 27 H 0.09 1.09 7.18 -2.39 -0.02 1.08 16 28 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.37 15.36 4.71 -92.71 -0.44 14.92 16 32 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.42 3.87 7.07 -92.71 -0.66 3.22 16 36 H 0.11 0.10 7.56 -2.39 -0.02 0.09 16 37 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.07 0.47 7.16 -2.39 -0.02 0.45 16 39 H 0.20 2.11 7.26 -2.91 -0.02 2.09 16 40 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -83.23 341.69 2.62 -80.61 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.12 Total: 21.92 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.46 Total: 1.02 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -5.57 Total: -130.76 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.98 kcal Total: -83.23 2.62 -80.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.063 kcal (2) G-P(sol) polarization free energy of solvation -83.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds