Wall clock time and date at job start Tue Mar 31 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46717 * 2 1 4 4 C 1.50698 * 109.47109 * 239.99915 * 2 1 3 5 5 O 1.21273 * 120.00189 * 239.99379 * 4 2 1 6 6 N 1.34778 * 120.00068 * 59.99619 * 4 2 1 7 7 C 1.46494 * 120.00233 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47293 * 180.02562 * 7 6 4 9 9 H 1.08996 * 109.47317 * 304.99941 * 8 7 6 10 10 C 1.52997 * 109.47222 * 65.00096 * 8 7 6 11 11 C 1.52999 * 109.47006 * 185.00033 * 8 7 6 12 12 N 1.46505 * 109.47187 * 175.00018 * 11 8 7 13 13 C 1.36928 * 120.00065 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00595 * 359.97438 * 13 12 11 15 15 C 1.38816 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99810 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00190 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47176 * 89.99237 * 17 15 13 19 19 H 1.48492 * 109.46966 * 209.99946 * 17 15 13 20 20 H 1.48505 * 109.46845 * 329.99816 * 17 15 13 21 21 N 1.46500 * 109.47352 * 119.99440 * 2 1 3 22 22 C 1.34943 * 126.03414 * 34.71946 * 21 2 1 23 23 C 1.35316 * 107.74531 * 180.25880 * 22 21 2 24 24 C 1.39873 * 107.91987 * 0.02562 * 23 22 21 25 25 N 1.30832 * 108.20166 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.46350 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46976 * 299.99649 * 1 2 3 28 28 H 1.08998 * 109.47542 * 60.00112 * 1 2 3 29 29 H 0.96999 * 119.99799 * 0.02562 * 6 4 2 30 30 H 1.09001 * 109.47270 * 300.00233 * 7 6 4 31 31 H 1.09004 * 109.47265 * 60.00043 * 7 6 4 32 32 H 1.08996 * 109.47102 * 59.99713 * 10 8 7 33 33 H 1.08998 * 109.47250 * 180.02562 * 10 8 7 34 34 H 1.08997 * 109.46913 * 300.00077 * 10 8 7 35 35 H 1.09002 * 109.47078 * 294.99644 * 11 8 7 36 36 H 1.09000 * 109.47232 * 54.99851 * 11 8 7 37 37 H 0.96998 * 119.99896 * 359.97438 * 12 11 8 38 38 H 0.97003 * 119.99570 * 180.02562 * 16 15 13 39 39 H 1.07996 * 126.13000 * 0.26422 * 22 21 2 40 40 H 1.07997 * 126.04396 * 180.02562 * 23 22 21 41 41 H 1.07999 * 125.89561 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6964 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6507 8 6 1.6858 -0.2188 -4.9000 9 1 0.5995 -0.1407 -4.8567 10 6 2.2958 1.1829 -4.9639 11 6 2.0911 -1.0087 -6.1460 12 7 1.5026 -0.3837 -7.3332 13 6 1.7287 -0.9201 -8.5726 14 1 2.3412 -1.8038 -8.6751 15 6 1.1706 -0.3282 -9.6974 16 7 1.3884 -0.8436 -10.8888 17 14 0.1117 1.2005 -9.5204 18 1 0.9685 2.4097 -9.6144 19 1 -0.9035 1.2275 -10.6037 20 1 -0.5715 1.1793 -8.2020 21 7 2.0184 -0.6905 1.1962 22 6 1.4374 -1.7524 1.7927 23 6 2.1917 -2.0867 2.8652 24 6 3.2703 -1.1983 2.9266 25 7 3.1669 -0.3604 1.9272 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.1493 0.5388 -2.5436 30 1 3.2855 -0.9398 -3.6506 31 1 1.8326 -1.9681 -3.6509 32 1 3.3821 1.1048 -5.0072 33 1 1.9323 1.6970 -5.8537 34 1 2.0071 1.7456 -4.0762 35 1 3.1772 -1.0110 -6.2374 36 1 1.7315 -2.0340 -6.0592 37 1 0.9521 0.4097 -7.2412 38 1 0.9987 -0.4298 -11.6748 39 1 0.5327 -2.2469 1.4715 40 1 1.9956 -2.8964 3.5524 41 1 4.0527 -1.2027 3.6711 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753615449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:43 Heat of formation + Delta-G solvation = 53.904942 kcal Electronic energy + Delta-G solvation = -21395.870728 eV Core-core repulsion = 18120.145242 eV Total energy + Delta-G solvation = -3275.725486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54050 -39.87409 -37.12439 -34.97018 -34.58329 -32.56308 -30.68031 -30.28055 -29.70881 -26.90483 -25.95810 -24.73480 -22.32051 -21.45616 -21.27013 -20.54080 -19.87834 -18.11386 -17.55704 -17.24874 -16.03104 -15.87543 -15.07214 -14.91322 -14.47194 -14.34171 -14.14419 -13.86893 -13.65557 -13.38488 -13.10499 -12.99536 -12.82464 -12.61344 -12.54740 -12.28397 -12.06403 -11.50935 -11.12000 -10.90276 -10.84405 -10.70279 -10.68230 -10.30429 -10.15009 -9.63212 -9.57214 -9.27654 -8.94623 -8.79253 -7.28053 -5.80420 -3.16472 1.61788 2.07348 2.27192 2.69016 2.96228 3.31659 3.34047 3.40761 4.01750 4.24137 4.37184 4.54459 4.55906 4.72220 4.76765 4.92668 4.99869 5.05535 5.14514 5.29816 5.39863 5.49389 5.57860 5.58589 5.65885 5.77360 5.79062 5.81211 5.98755 6.14086 6.23885 6.37675 6.43149 6.58865 6.68042 6.71018 7.18895 7.49484 7.88753 7.95562 8.38332 9.16901 9.88830 10.08307 11.37994 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044034 B = 0.002784 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.714720 B =10056.379111 C =10286.208739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.128 0.872 4 C 0.498 3.502 5 O -0.520 6.520 6 N -0.720 5.720 7 C 0.127 3.873 8 C -0.114 4.114 9 H 0.077 0.923 10 C -0.144 4.144 11 C 0.165 3.835 12 N -0.754 5.754 13 C -0.245 4.245 14 H 0.090 0.910 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.885 3.115 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.278 1.278 21 N -0.355 5.355 22 C 0.068 3.932 23 C -0.275 4.275 24 C 0.047 3.953 25 N -0.292 5.292 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.401 0.599 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 3.398 27.586 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.146 0.854 4 C 0.281 3.719 5 O -0.395 6.395 6 N -0.373 5.373 7 C 0.004 3.996 8 C -0.133 4.133 9 H 0.095 0.905 10 C -0.201 4.201 11 C 0.037 3.963 12 N -0.400 5.400 13 C -0.375 4.375 14 H 0.108 0.892 15 C -0.192 4.192 16 N -0.581 5.581 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.204 1.204 21 N -0.137 5.137 22 C -0.078 4.078 23 C -0.304 4.304 24 C -0.140 4.140 25 N -0.112 5.112 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.236 0.764 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.187 0.813 40 H 0.165 0.835 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.266 3.581 26.751 27.085 hybrid contribution -1.377 0.688 0.218 1.555 sum -3.643 4.269 26.969 27.547 Atomic orbital electron populations 1.22173 0.90473 1.04502 1.04820 1.21095 0.96139 0.97752 0.81412 0.85444 1.20674 0.81201 0.85314 0.84707 1.90782 1.36660 1.25682 1.86385 1.45999 1.53606 1.32202 1.05451 1.21444 0.99704 0.96162 0.82313 1.21610 1.00903 0.96323 0.94513 0.90501 1.21820 1.01421 0.95655 1.01246 1.20548 0.96731 0.94637 0.84384 1.42675 1.61178 1.33125 1.03019 1.19061 1.26535 1.09732 0.82139 0.89170 1.24687 1.00470 0.98904 0.95155 1.69705 1.49079 1.41945 0.97398 0.86540 0.80724 0.84290 0.76898 1.21049 1.21693 1.20428 1.48169 1.19661 1.24672 1.21236 1.22419 0.99855 0.90775 0.94704 1.21469 0.99281 1.06364 1.03333 1.23876 0.99080 0.94028 0.97008 1.77357 1.02096 1.24519 1.07271 0.90733 0.90048 0.89148 0.76447 0.90999 0.90976 0.92267 0.91752 0.93650 0.95071 0.95259 0.80636 0.93020 0.81305 0.83510 0.80017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 8.73 37.16 0.32 -0.47 16 2 C 0.14 1.22 3.73 -69.08 -0.26 0.96 16 3 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.50 5.74 7.22 -10.99 -0.08 5.66 16 5 O -0.52 -8.54 16.42 5.56 0.09 -8.45 16 6 N -0.72 -7.01 5.18 -60.30 -0.31 -7.32 16 7 C 0.13 1.56 5.06 -4.04 -0.02 1.54 16 8 C -0.11 -1.53 2.46 -90.62 -0.22 -1.75 16 9 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 10 C -0.14 -1.82 8.94 37.16 0.33 -1.49 16 11 C 0.16 3.02 5.65 -4.04 -0.02 3.00 16 12 N -0.75 -17.32 5.13 -59.90 -0.31 -17.63 16 13 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16 14 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 15 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 16 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 17 Si 0.89 21.63 27.74 -169.99 -4.71 16.92 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 21 N -0.36 -3.93 3.02 -55.99 -0.17 -4.09 16 22 C 0.07 0.66 10.58 -17.23 -0.18 0.48 16 23 C -0.28 -2.59 10.80 -40.01 -0.43 -3.02 16 24 C 0.05 0.48 12.03 -17.37 -0.21 0.27 16 25 N -0.29 -3.73 12.58 30.62 0.39 -3.34 16 26 H 0.07 0.38 7.15 -51.93 -0.37 0.01 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.29 7.56 -51.93 -0.39 -0.11 16 29 H 0.40 2.73 7.07 -40.82 -0.29 2.44 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.93 7.18 -51.93 -0.37 0.56 16 34 H 0.04 0.44 7.18 -51.93 -0.37 0.06 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.36 7.97 4.71 -40.82 -0.19 7.77 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.17 1.14 7.26 -52.49 -0.38 0.76 16 40 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -36.63 341.68 -6.32 -42.95 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.19 Total: 6.08 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.02 Total: -1.85 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.37 Total: -60.81 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.63 -6.32 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.858 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds