Wall clock time and date at job start Tue Mar 31 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99911 * 2 1 4 4 H 1.48494 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46968 * 299.99825 * 3 2 1 6 6 H 1.48500 * 109.47205 * 59.99357 * 3 2 1 7 7 C 1.37870 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99604 * 173.70705 * 7 2 1 9 9 C 1.50700 * 120.00532 * 353.70873 * 7 2 1 10 10 C 1.52998 * 115.55098 * 86.11088 * 9 7 2 11 11 O 1.45193 * 109.47197 * 65.10944 * 10 9 7 12 12 C 1.34231 * 116.99862 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00262 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99858 * 180.02562 * 12 11 10 15 15 C 1.53004 * 109.47042 * 179.97438 * 14 12 11 16 16 C 1.54069 * 108.87374 * 297.96864 * 15 14 12 17 17 C 1.54065 * 112.81645 * 197.50334 * 16 15 14 18 18 C 1.50476 * 112.50012 * 318.28839 * 17 16 15 19 19 C 1.54242 * 108.51644 * 94.15119 * 18 17 16 20 20 C 1.45548 * 112.40548 * 280.00858 * 19 18 17 21 21 C 1.50475 * 108.87546 * 174.99794 * 15 14 12 22 22 C 1.52999 * 117.49907 * 231.78289 * 9 7 2 23 23 C 1.52998 * 117.49474 * 300.43856 * 9 7 2 24 24 H 0.96995 * 120.00024 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46643 * 305.10661 * 10 9 7 26 26 H 1.09004 * 109.47247 * 185.11264 * 10 9 7 27 27 H 1.09000 * 109.47469 * 59.99285 * 14 12 11 28 28 H 1.09002 * 109.47036 * 299.99054 * 14 12 11 29 29 H 1.08996 * 108.76840 * 56.48297 * 15 14 12 30 30 H 1.08997 * 108.81763 * 318.37050 * 16 15 14 31 31 H 1.09009 * 108.81112 * 76.75926 * 16 15 14 32 32 H 1.09003 * 108.87777 * 197.50861 * 17 16 15 33 33 H 1.09007 * 108.87375 * 79.06707 * 17 16 15 34 34 H 1.08992 * 109.62729 * 334.44044 * 18 17 16 35 35 H 1.09003 * 109.62568 * 213.86030 * 18 17 16 36 36 H 1.08996 * 108.89894 * 40.76615 * 19 18 17 37 37 H 1.09005 * 108.89115 * 159.35127 * 19 18 17 38 38 H 1.08996 * 108.88965 * 182.69457 * 20 19 18 39 39 H 1.09000 * 108.89538 * 301.18492 * 20 19 18 40 40 H 1.09002 * 109.62787 * 95.21886 * 21 15 14 41 41 H 1.08995 * 109.63008 * 334.63257 * 21 15 14 42 42 H 1.09004 * 117.49988 * 215.00227 * 22 9 7 43 43 H 1.08998 * 117.50067 * 0.02562 * 22 9 7 44 44 H 1.08999 * 117.50009 * 359.97438 * 23 9 7 45 45 H 1.09005 * 117.49531 * 144.97394 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0797 -1.1968 -0.1020 9 6 1.2579 -2.4952 0.1441 10 6 0.7195 -3.0940 -1.1567 11 8 1.8303 -3.4659 -2.0146 12 6 1.5265 -4.0097 -3.2036 13 8 0.3706 -4.1702 -3.5170 14 6 2.6271 -4.4212 -4.1473 15 6 2.0144 -5.0085 -5.4203 16 6 1.2063 -6.2669 -5.0499 17 6 0.9110 -7.1665 -6.2652 18 6 0.5200 -6.3766 -7.4848 19 6 1.7832 -6.1310 -8.3352 20 6 2.5898 -5.0318 -7.8257 21 6 3.1172 -5.3006 -6.4014 22 6 1.7341 -3.4673 1.2254 23 6 0.4254 -2.6956 1.4120 24 1 -0.4850 0.8400 -0.0004 25 1 0.0979 -2.3574 -1.6658 26 1 0.1234 -3.9782 -0.9304 27 1 3.2556 -5.1714 -3.6674 28 1 3.2311 -3.5505 -4.4027 29 1 1.3398 -4.2720 -5.8569 30 1 1.7691 -6.8423 -4.3150 31 1 0.2602 -5.9586 -4.6046 32 1 0.0989 -7.8476 -6.0108 33 1 1.8011 -7.7523 -6.4949 34 1 0.0918 -5.4215 -7.1807 35 1 -0.2097 -6.9394 -8.0671 36 1 2.3867 -7.0386 -8.3411 37 1 1.4815 -5.9016 -9.3572 38 1 3.4378 -4.8776 -8.4929 39 1 1.9839 -4.1259 -7.8127 40 1 3.4185 -6.3444 -6.3135 41 1 3.9694 -4.6521 -6.1982 42 1 1.6637 -4.5335 1.0100 43 1 2.5870 -3.1655 1.8332 44 1 0.4180 -1.8866 2.1424 45 1 -0.5063 -3.2538 1.3192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079168473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:19 Heat of formation + Delta-G solvation = -95.308747 kcal Electronic energy + Delta-G solvation = -22513.798538 eV Core-core repulsion = 19302.850253 eV Total energy + Delta-G solvation = -3210.948285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10605 -38.76836 -36.76534 -35.23233 -33.64447 -32.32110 -31.95673 -28.70513 -26.58143 -25.23371 -24.92855 -23.42696 -21.19362 -20.69604 -20.22779 -19.26276 -18.97040 -16.92234 -16.45563 -15.87325 -15.74703 -15.25375 -14.87844 -14.56645 -14.42862 -13.96576 -13.77804 -13.15313 -13.07020 -12.75121 -12.64807 -12.22604 -12.00318 -11.78675 -11.59700 -11.53626 -11.00562 -10.86369 -10.84427 -10.75902 -10.60260 -10.52059 -10.41166 -10.28929 -10.25785 -10.22852 -9.82729 -9.75677 -9.45190 -8.81226 -8.47054 -8.20271 -6.07097 -4.12270 2.84008 3.27158 3.35743 3.39971 3.43009 4.39004 4.52636 4.55719 4.72714 5.00033 5.03089 5.09507 5.20123 5.22666 5.29615 5.33256 5.36581 5.53852 5.62168 5.66960 5.72629 5.78138 5.95026 5.98213 6.00342 6.04342 6.08396 6.13309 6.17672 6.25261 6.26150 6.29414 6.34247 6.45019 6.54445 6.58077 6.68759 6.74955 7.03371 7.31828 7.37780 7.50402 7.86382 8.37468 8.51909 8.89758 9.53632 11.02331 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.003786 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.030621 B = 7394.807323 C = 7974.555451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.116 3.884 11 O -0.340 6.340 12 C 0.451 3.549 13 O -0.521 6.521 14 C -0.114 4.114 15 C -0.073 4.073 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.206 4.206 23 C -0.145 4.145 24 H 0.260 0.740 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 -11.924 -12.870 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.526 4.526 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.043 3.957 11 O -0.255 6.255 12 C 0.295 3.705 13 O -0.412 6.412 14 C -0.151 4.151 15 C -0.092 4.092 16 C -0.157 4.157 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.243 4.243 23 C -0.183 4.183 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.883 -11.820 -12.906 17.926 hybrid contribution 0.168 0.976 0.097 0.995 sum 4.051 -10.844 -12.808 17.264 Atomic orbital electron populations 1.70015 1.05906 1.26567 1.49325 1.25019 0.94852 0.99086 0.94527 0.86535 0.80316 0.83600 0.77604 1.19572 1.21025 1.20917 1.20431 0.93126 0.88347 1.50742 0.91836 1.18787 0.98903 0.94205 0.84449 1.22853 0.85497 0.96783 0.90549 1.86523 1.41356 1.70678 1.26979 1.23634 0.90196 0.74524 0.82184 1.90563 1.22367 1.52165 1.76091 1.21636 0.96332 1.02981 0.94193 1.20809 0.96763 0.98156 0.93445 1.22127 1.01647 0.94888 0.97057 1.21313 1.00731 0.98033 0.95159 1.21359 0.97077 1.01066 0.96229 1.20487 0.96777 0.99114 0.98973 1.20477 0.99484 0.99162 0.96472 1.21421 0.97556 1.01993 0.94071 1.23006 0.98544 0.95701 1.07030 1.22530 0.92268 1.01201 1.02256 0.92981 0.90751 0.94467 0.88299 0.87980 0.90389 0.92833 0.89937 0.92661 0.92560 0.91259 0.92368 0.92398 0.92697 0.92454 0.91997 0.91493 0.91508 0.91600 0.90085 0.89435 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.97 12.88 55.43 0.71 -24.26 16 2 C 0.07 1.87 5.38 -17.82 -0.10 1.77 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.49 -13.39 8.77 -34.44 -0.30 -13.69 16 8 H 0.06 1.75 7.82 -52.48 -0.41 1.34 16 9 C 0.04 0.93 1.62 -155.66 -0.25 0.68 16 10 C 0.12 2.79 5.29 37.16 0.20 2.99 16 11 O -0.34 -7.48 10.16 -39.26 -0.40 -7.88 16 12 C 0.45 8.48 7.68 36.01 0.28 8.76 16 13 O -0.52 -10.81 13.60 -18.75 -0.25 -11.06 16 14 C -0.11 -1.53 5.02 -27.88 -0.14 -1.67 16 15 C -0.07 -0.88 1.39 -91.32 -0.13 -1.01 16 16 C -0.12 -1.48 4.65 -25.62 -0.12 -1.60 16 17 C -0.11 -1.17 5.31 -27.44 -0.15 -1.32 16 18 C -0.12 -1.17 5.61 -27.34 -0.15 -1.32 16 19 C -0.12 -1.00 5.26 -29.60 -0.16 -1.15 16 20 C -0.12 -1.06 5.26 -29.60 -0.16 -1.22 16 21 C -0.11 -1.07 5.13 -27.34 -0.14 -1.21 16 22 C -0.21 -4.51 9.96 -26.70 -0.27 -4.78 16 23 C -0.15 -3.40 9.37 -26.70 -0.25 -3.65 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.07 1.97 8.13 -51.93 -0.42 1.55 16 26 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.10 1.15 8.07 -51.93 -0.42 0.73 16 28 H 0.10 1.26 7.96 -51.93 -0.41 0.84 16 29 H 0.08 1.06 6.48 -51.93 -0.34 0.72 16 30 H 0.05 0.64 7.93 -51.93 -0.41 0.23 16 31 H 0.08 1.25 6.16 -51.92 -0.32 0.93 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.52 6.63 -51.93 -0.34 0.18 16 34 H 0.07 0.77 6.98 -51.93 -0.36 0.41 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.47 7.47 -51.93 -0.39 0.08 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 40 H 0.07 0.60 6.98 -51.93 -0.36 0.24 16 41 H 0.07 0.59 7.59 -51.93 -0.39 0.19 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 44 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -29.33 350.40 -9.42 -38.75 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.91 Total: 1.53 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -1.83 Total: -18.42 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.71 Total: -24.26 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.65 Total: -18.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.33 -9.42 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.558 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds