Wall clock time and date at job start Tue Mar 31 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99911 * 2 1 4 4 H 1.48494 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46968 * 299.99825 * 3 2 1 6 6 H 1.48500 * 109.47205 * 59.99357 * 3 2 1 7 7 C 1.37870 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99604 * 173.70705 * 7 2 1 9 9 C 1.50700 * 120.00532 * 353.70873 * 7 2 1 10 10 C 1.52998 * 115.55098 * 86.11088 * 9 7 2 11 11 O 1.45193 * 109.47197 * 65.10944 * 10 9 7 12 12 C 1.34231 * 116.99862 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00262 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99858 * 180.02562 * 12 11 10 15 15 C 1.53004 * 109.47042 * 179.97438 * 14 12 11 16 16 C 1.54069 * 108.87374 * 297.96864 * 15 14 12 17 17 C 1.54065 * 112.81645 * 197.50334 * 16 15 14 18 18 C 1.50476 * 112.50012 * 318.28839 * 17 16 15 19 19 C 1.54242 * 108.51644 * 94.15119 * 18 17 16 20 20 C 1.45548 * 112.40548 * 280.00858 * 19 18 17 21 21 C 1.50475 * 108.87546 * 174.99794 * 15 14 12 22 22 C 1.52999 * 117.49907 * 231.78289 * 9 7 2 23 23 C 1.52998 * 117.49474 * 300.43856 * 9 7 2 24 24 H 0.96995 * 120.00024 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46643 * 305.10661 * 10 9 7 26 26 H 1.09004 * 109.47247 * 185.11264 * 10 9 7 27 27 H 1.09000 * 109.47469 * 59.99285 * 14 12 11 28 28 H 1.09002 * 109.47036 * 299.99054 * 14 12 11 29 29 H 1.08996 * 108.76840 * 56.48297 * 15 14 12 30 30 H 1.08997 * 108.81763 * 318.37050 * 16 15 14 31 31 H 1.09009 * 108.81112 * 76.75926 * 16 15 14 32 32 H 1.09003 * 108.87777 * 197.50861 * 17 16 15 33 33 H 1.09007 * 108.87375 * 79.06707 * 17 16 15 34 34 H 1.08992 * 109.62729 * 334.44044 * 18 17 16 35 35 H 1.09003 * 109.62568 * 213.86030 * 18 17 16 36 36 H 1.08996 * 108.89894 * 40.76615 * 19 18 17 37 37 H 1.09005 * 108.89115 * 159.35127 * 19 18 17 38 38 H 1.08996 * 108.88965 * 182.69457 * 20 19 18 39 39 H 1.09000 * 108.89538 * 301.18492 * 20 19 18 40 40 H 1.09002 * 109.62787 * 95.21886 * 21 15 14 41 41 H 1.08995 * 109.63008 * 334.63257 * 21 15 14 42 42 H 1.09004 * 117.49988 * 215.00227 * 22 9 7 43 43 H 1.08998 * 117.50067 * 0.02562 * 22 9 7 44 44 H 1.08999 * 117.50009 * 359.97438 * 23 9 7 45 45 H 1.09005 * 117.49531 * 144.97394 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0797 -1.1968 -0.1020 9 6 1.2579 -2.4952 0.1441 10 6 0.7195 -3.0940 -1.1567 11 8 1.8303 -3.4659 -2.0146 12 6 1.5265 -4.0097 -3.2036 13 8 0.3706 -4.1702 -3.5170 14 6 2.6271 -4.4212 -4.1473 15 6 2.0144 -5.0085 -5.4203 16 6 1.2063 -6.2669 -5.0499 17 6 0.9110 -7.1665 -6.2652 18 6 0.5200 -6.3766 -7.4848 19 6 1.7832 -6.1310 -8.3352 20 6 2.5898 -5.0318 -7.8257 21 6 3.1172 -5.3006 -6.4014 22 6 1.7341 -3.4673 1.2254 23 6 0.4254 -2.6956 1.4120 24 1 -0.4850 0.8400 -0.0004 25 1 0.0979 -2.3574 -1.6658 26 1 0.1234 -3.9782 -0.9304 27 1 3.2556 -5.1714 -3.6674 28 1 3.2311 -3.5505 -4.4027 29 1 1.3398 -4.2720 -5.8569 30 1 1.7691 -6.8423 -4.3150 31 1 0.2602 -5.9586 -4.6046 32 1 0.0989 -7.8476 -6.0108 33 1 1.8011 -7.7523 -6.4949 34 1 0.0918 -5.4215 -7.1807 35 1 -0.2097 -6.9394 -8.0671 36 1 2.3867 -7.0386 -8.3411 37 1 1.4815 -5.9016 -9.3572 38 1 3.4378 -4.8776 -8.4929 39 1 1.9839 -4.1259 -7.8127 40 1 3.4185 -6.3444 -6.3135 41 1 3.9694 -4.6521 -6.1982 42 1 1.6637 -4.5335 1.0100 43 1 2.5870 -3.1655 1.8332 44 1 0.4180 -1.8866 2.1424 45 1 -0.5063 -3.2538 1.3192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079168473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:18 Heat of formation + Delta-G solvation = -108.312403 kcal Electronic energy + Delta-G solvation = -22514.362419 eV Core-core repulsion = 19302.850253 eV Total energy + Delta-G solvation = -3211.512166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54318 -39.83014 -38.52418 -36.92590 -34.64214 -34.03352 -33.11824 -29.93134 -28.28236 -27.21773 -25.76481 -24.45223 -23.00214 -21.70289 -21.39233 -21.19936 -19.94566 -18.52510 -18.25723 -17.40337 -17.07286 -16.59225 -16.40240 -15.81631 -15.70627 -15.32593 -14.88016 -14.64655 -14.20975 -13.85940 -13.78275 -13.69824 -13.41844 -13.21314 -12.94472 -12.83844 -12.76070 -12.62696 -12.37716 -12.10569 -11.82314 -11.67628 -11.64830 -11.48909 -11.48495 -11.21835 -11.14115 -11.02233 -10.92645 -10.77541 -10.50128 -10.09077 -8.15196 -6.26647 1.32707 1.39741 1.42286 1.53844 1.91059 2.41504 3.13837 3.41839 3.64380 3.70316 3.86701 3.93738 4.13490 4.17777 4.22497 4.36212 4.38463 4.43008 4.48791 4.51459 4.54738 4.64836 4.66580 4.72545 4.82828 4.90271 4.92169 4.95012 5.15940 5.16949 5.19329 5.22513 5.34090 5.37136 5.38536 5.40115 5.47162 5.50752 5.57033 5.60765 5.66130 5.73484 5.83170 6.34693 6.79128 6.91813 7.42382 8.93947 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.003786 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.030621 B = 7394.807323 C = 7974.555451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.056 0.944 9 C 0.004 3.996 10 C 0.130 3.870 11 O -0.352 6.352 12 C 0.443 3.557 13 O -0.546 6.546 14 C -0.106 4.106 15 C -0.067 4.067 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.177 4.177 23 C -0.147 4.147 24 H 0.261 0.739 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 -13.041 -13.856 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.003 3.997 10 C 0.056 3.944 11 O -0.268 6.268 12 C 0.289 3.711 13 O -0.437 6.437 14 C -0.143 4.143 15 C -0.085 4.085 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.214 4.214 23 C -0.185 4.185 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.144 0.856 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.023 -12.948 -13.899 19.927 hybrid contribution -0.534 1.281 0.375 1.437 sum 5.490 -11.668 -13.524 18.686 Atomic orbital electron populations 1.70124 1.07214 1.27252 1.50270 1.25747 0.95607 1.02243 0.94244 0.85570 0.79368 0.79600 0.77554 1.18784 1.20967 1.20374 1.20676 0.92977 0.89807 1.50680 0.92585 1.18891 1.00521 0.94823 0.85458 1.22431 0.85723 0.95921 0.90327 1.86532 1.40591 1.71399 1.28258 1.24795 0.91410 0.73337 0.81584 1.90565 1.23957 1.52949 1.76232 1.21868 0.94788 1.04330 0.93354 1.20800 0.97261 0.97247 0.93230 1.22083 0.99955 0.95495 0.98114 1.21290 1.01546 0.97666 0.94315 1.21366 0.98076 0.99970 0.96482 1.20477 0.96104 0.99561 0.98976 1.20486 0.99928 0.98697 0.96518 1.21404 0.96676 1.03107 0.93325 1.23014 0.97582 0.96398 1.04392 1.22464 0.93624 1.01309 1.01103 0.93032 0.94570 0.93704 0.85633 0.86339 0.92636 0.92277 0.93587 0.92773 0.90698 0.93511 0.91500 0.91079 0.91943 0.90793 0.93419 0.90130 0.90252 0.89144 0.89492 0.91173 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.69 12.88 21.45 0.28 -52.41 16 2 C 0.02 1.20 5.38 84.65 0.46 1.65 16 3 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.50 -27.83 8.77 25.60 0.22 -27.61 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.00 0.18 1.62 -52.93 -0.09 0.09 16 10 C 0.13 6.37 5.29 71.98 0.38 6.75 16 11 O -0.35 -15.58 10.16 -51.43 -0.52 -16.10 16 12 C 0.44 16.77 7.68 71.24 0.55 17.32 16 13 O -0.55 -23.43 13.60 21.96 0.30 -23.13 16 14 C -0.11 -2.69 5.02 29.85 0.15 -2.54 16 15 C -0.07 -1.53 1.39 -11.25 -0.02 -1.55 16 16 C -0.12 -2.87 4.65 31.32 0.15 -2.72 16 17 C -0.11 -2.10 5.31 30.14 0.16 -1.94 16 18 C -0.12 -2.24 5.61 30.20 0.17 -2.07 16 19 C -0.11 -1.69 5.26 28.74 0.15 -1.54 16 20 C -0.12 -1.86 5.26 28.74 0.15 -1.71 16 21 C -0.11 -1.75 5.13 30.20 0.15 -1.59 16 22 C -0.18 -7.52 9.96 30.62 0.30 -7.22 16 23 C -0.15 -6.91 9.37 30.62 0.29 -6.62 16 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 26 H 0.04 2.07 8.09 -2.39 -0.02 2.05 16 27 H 0.13 2.57 8.07 -2.39 -0.02 2.55 16 28 H 0.12 2.66 7.96 -2.39 -0.02 2.65 16 29 H 0.06 1.53 6.48 -2.39 -0.02 1.51 16 30 H 0.06 1.33 7.93 -2.39 -0.02 1.31 16 31 H 0.05 1.44 6.16 -2.38 -0.01 1.43 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.16 6.63 -2.38 -0.02 1.15 16 34 H 0.05 1.07 6.98 -2.39 -0.02 1.05 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 0.90 7.47 -2.39 -0.02 0.88 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.88 7.47 -2.39 -0.02 0.86 16 40 H 0.08 1.13 6.98 -2.39 -0.02 1.11 16 41 H 0.08 1.12 7.59 -2.39 -0.02 1.10 16 42 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 43 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 44 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 45 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 Total: -1.00 -64.43 350.40 6.20 -58.23 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.94 Total: 19.19 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.18 Total: -31.29 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.28 Total: -52.41 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.22 Total: -39.23 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.43 6.20 -58.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.086 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds