Wall clock time and date at job start Tue Mar 31 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47089 * 2 1 4 4 C 1.46898 * 111.00080 * 160.29206 * 3 2 1 5 5 C 1.53004 * 109.46933 * 287.71045 * 4 3 2 6 6 C 1.46902 * 110.99805 * 284.24302 * 3 2 1 7 7 C 1.50704 * 109.46907 * 170.00285 * 6 3 2 8 8 O 1.21297 * 120.00068 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00138 * 180.02562 * 7 6 3 10 10 C 1.40155 * 120.00238 * 179.97438 * 9 7 6 11 11 C 1.40412 * 125.97254 * 359.97438 * 10 9 7 12 12 C 1.35240 * 107.86778 * 179.73997 * 11 10 9 13 13 N 1.34972 * 107.85960 * 0.38362 * 12 11 10 14 14 C 1.46500 * 125.97438 * 179.87889 * 13 12 11 15 15 C 1.50691 * 109.47481 * 124.71671 * 14 13 12 16 16 H 1.08006 * 119.99897 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00237 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00061 * 179.72059 * 17 15 14 19 19 Si 1.86797 * 120.00045 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47123 * 269.72277 * 19 17 15 21 21 H 1.48502 * 109.46934 * 29.72103 * 19 17 15 22 22 H 1.48503 * 109.47453 * 149.72166 * 19 17 15 23 23 N 1.31218 * 125.97626 * 179.97438 * 10 9 7 24 24 H 1.08995 * 109.47357 * 305.48931 * 1 2 3 25 25 H 1.09003 * 109.47057 * 65.49025 * 1 2 3 26 26 H 1.09003 * 109.47272 * 185.48170 * 1 2 3 27 27 H 1.09004 * 109.46700 * 240.00289 * 2 1 3 28 28 H 1.09000 * 109.47062 * 120.00140 * 2 1 3 29 29 H 1.09001 * 109.47350 * 47.70663 * 4 3 2 30 30 H 1.09001 * 109.47430 * 167.71318 * 4 3 2 31 31 H 1.08994 * 109.47196 * 178.94523 * 5 4 3 32 32 H 1.08998 * 109.47200 * 298.94864 * 5 4 3 33 33 H 1.09004 * 109.46881 * 58.94595 * 5 4 3 34 34 H 1.08996 * 109.47534 * 50.00655 * 6 3 2 35 35 H 1.08996 * 109.47364 * 289.99987 * 6 3 2 36 36 H 0.97001 * 119.99779 * 359.97438 * 9 7 6 37 37 H 1.08002 * 126.06854 * 359.97438 * 11 10 9 38 38 H 1.07997 * 126.07074 * 180.26713 * 12 11 10 39 39 H 1.09004 * 109.47017 * 4.71216 * 14 13 12 40 40 H 1.08997 * 109.46921 * 244.71863 * 14 13 12 41 41 H 0.96999 * 120.00080 * 180.27306 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4510 0.4625 5 6 3.4620 1.1927 1.9697 6 6 1.8770 1.9937 -1.3293 7 6 2.1546 3.4721 -1.2371 8 8 2.4424 3.9697 -0.1691 9 7 2.0820 4.2415 -2.3413 10 6 2.3396 5.6165 -2.2555 11 6 2.6820 6.3203 -1.0897 12 6 2.8533 7.6194 -1.4246 13 7 2.6208 7.7397 -2.7486 14 6 2.6938 8.9793 -3.5260 15 6 3.6468 8.7942 -4.6786 16 1 4.1484 7.8478 -4.8178 17 6 3.8784 9.8328 -5.5553 18 7 4.7143 9.6729 -6.5579 19 14 3.0114 11.4697 -5.3140 20 1 1.7268 11.4639 -6.0588 21 1 2.7446 11.6801 -3.8684 22 1 3.8737 12.5664 -5.8230 23 7 2.3030 6.4712 -3.2505 24 1 -0.3634 0.5966 0.8367 25 1 -0.3633 0.4263 -0.9351 26 1 -0.3634 -1.0230 0.0982 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 4.0034 0.6954 -0.0552 30 1 3.8195 2.4394 0.2496 31 1 4.4971 1.2231 2.3097 32 1 2.8864 1.9591 2.4888 33 1 3.0377 0.2119 2.1845 34 1 0.8619 1.8368 -1.6938 35 1 2.5855 1.5333 -2.0178 36 1 1.8514 3.8437 -3.1953 37 1 2.7929 5.8985 -0.1017 38 1 3.1258 8.4189 -0.7516 39 1 3.0486 9.7883 -2.8875 40 1 1.7038 9.2266 -3.9093 41 1 4.8803 10.4049 -7.1724 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117854943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:10 Heat of formation + Delta-G solvation = 34.961293 kcal Electronic energy + Delta-G solvation = -21527.163816 eV Core-core repulsion = 18250.616872 eV Total energy + Delta-G solvation = -3276.546945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22771 -40.80492 -38.41347 -36.15690 -35.18879 -33.21461 -32.65681 -31.38056 -30.93427 -29.08438 -27.33578 -24.58036 -23.84869 -23.07512 -22.02251 -21.29461 -20.87187 -19.10772 -18.36307 -17.98782 -17.18916 -16.84359 -16.40785 -16.24281 -15.87795 -15.62880 -15.31237 -14.80949 -14.67313 -14.53180 -14.22371 -13.98461 -13.82599 -13.56606 -13.06433 -12.97844 -12.84096 -12.65263 -12.46799 -12.36210 -12.18027 -11.92021 -11.81658 -11.62245 -11.47847 -11.43081 -10.88159 -10.70488 -9.75941 -9.28493 -9.08837 -8.38133 -6.48512 0.95262 1.30834 1.38708 1.39972 1.47654 1.50001 2.24434 2.28505 2.30945 2.94414 2.96898 3.60035 3.96848 4.04590 4.17549 4.21800 4.27781 4.32875 4.45951 4.59506 4.61288 4.63705 4.74946 4.81446 4.86261 4.89432 4.91261 4.98946 5.14917 5.16963 5.23545 5.24384 5.38465 5.46068 5.90173 5.97382 6.01089 6.16167 6.30334 6.41219 6.57527 7.01880 7.14544 7.16667 8.78966 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038506 B = 0.003024 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.990787 B = 9258.339446 C = 9409.343385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.538 5.538 4 C 0.046 3.954 5 C -0.136 4.136 6 C 0.048 3.952 7 C 0.517 3.483 8 O -0.529 6.529 9 N -0.629 5.629 10 C 0.267 3.733 11 C -0.294 4.294 12 C 0.059 3.941 13 N -0.345 5.345 14 C 0.239 3.761 15 C -0.547 4.547 16 H 0.026 0.974 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.230 1.230 22 H -0.278 1.278 23 N -0.349 5.349 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.423 0.577 37 H 0.167 0.833 38 H 0.209 0.791 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 -17.325 14.384 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.082 4.082 5 C -0.194 4.194 6 C -0.083 4.083 7 C 0.305 3.695 8 O -0.402 6.402 9 N -0.280 5.280 10 C 0.012 3.988 11 C -0.325 4.325 12 C -0.089 4.089 13 N -0.127 5.127 14 C 0.120 3.880 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.581 5.581 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.153 1.153 22 H -0.203 1.203 23 N -0.180 5.180 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.260 0.740 37 H 0.185 0.815 38 H 0.225 0.775 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.955 -16.409 14.053 23.022 hybrid contribution 0.664 0.079 -0.770 1.020 sum -7.290 -16.330 13.283 22.277 Atomic orbital electron populations 1.21786 0.94276 1.02285 1.02083 1.22234 0.96642 0.86815 1.02097 1.61700 1.21700 1.19437 1.23578 1.22169 0.87875 1.00988 0.97155 1.21667 1.01615 1.01709 0.94412 1.21973 1.05683 0.87910 0.92755 1.21377 0.75846 0.89994 0.82308 1.90605 1.46051 1.74695 1.28882 1.42706 1.68959 1.02843 1.13461 1.19526 1.00212 0.86153 0.92926 1.21749 1.18186 0.92352 1.00185 1.23236 1.00110 0.99735 0.85791 1.48509 1.51506 1.06182 1.06525 1.19889 0.97610 0.78958 0.91586 1.21235 1.26268 0.99712 1.11301 0.95567 1.25925 0.95421 1.03398 0.93707 1.70048 1.36816 1.34682 1.16594 0.85614 0.78502 0.77092 0.81148 1.19003 1.15255 1.20326 1.77305 1.28998 0.90056 1.21656 0.93064 0.92563 0.90736 0.93195 0.89730 0.94036 0.92043 0.91816 0.93470 0.91650 0.85010 0.89284 0.73953 0.81541 0.77462 0.89981 0.93777 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.94 71.98 0.72 -0.98 16 2 C 0.05 0.62 5.54 86.30 0.48 1.10 16 3 N -0.54 -10.00 4.13 -900.79 -3.72 -13.72 16 4 C 0.05 0.91 5.23 86.30 0.45 1.36 16 5 C -0.14 -2.41 10.00 71.98 0.72 -1.69 16 6 C 0.05 0.83 5.27 85.56 0.45 1.28 16 7 C 0.52 13.95 7.35 87.66 0.64 14.59 16 8 O -0.53 -17.74 11.61 -3.08 -0.04 -17.78 16 9 N -0.63 -18.73 5.45 -307.51 -1.68 -20.41 16 10 C 0.27 10.62 8.11 133.33 1.08 11.70 16 11 C -0.29 -11.28 9.61 22.11 0.21 -11.07 16 12 C 0.06 2.22 11.44 83.52 0.96 3.18 16 13 N -0.35 -15.63 3.67 -351.85 -1.29 -16.92 16 14 C 0.24 11.15 5.33 85.63 0.46 11.61 16 15 C -0.55 -31.74 9.79 25.60 0.25 -31.49 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 17 C 0.01 0.81 5.47 84.65 0.46 1.27 16 18 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 19 Si 0.96 40.80 27.47 68.60 1.88 42.68 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.23 -8.48 6.54 99.48 0.65 -7.82 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 N -0.35 -16.32 12.42 -54.45 -0.68 -17.00 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.61 6.97 -2.39 -0.02 0.60 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.52 8.00 -2.38 -0.02 0.50 16 28 H 0.08 0.99 6.25 -2.39 -0.01 0.97 16 29 H 0.04 0.70 8.05 -2.39 -0.02 0.68 16 30 H 0.06 1.59 5.81 -2.39 -0.01 1.58 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.93 6.53 -2.38 -0.02 0.91 16 34 H 0.13 1.68 6.72 -2.39 -0.02 1.66 16 35 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 36 H 0.42 10.09 8.82 -92.71 -0.82 9.27 16 37 H 0.17 6.22 5.92 -2.91 -0.02 6.20 16 38 H 0.21 5.78 8.06 -2.91 -0.02 5.75 16 39 H 0.08 3.33 7.13 -2.39 -0.02 3.31 16 40 H 0.04 1.99 7.57 -2.39 -0.02 1.97 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -76.82 335.41 1.83 -74.99 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.16 Total: 25.25 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.88 Total: 0.86 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -7.06 Total: -126.00 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.04 Total: -17.78 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.88 Total: 42.68 kcal Total: -76.82 1.83 -74.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.949 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds