Wall clock time and date at job start Tue Mar 31 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00245 * 2 1 4 4 C 1.46905 * 110.99935 * 123.95154 * 2 1 3 5 5 C 1.53003 * 109.47084 * 66.04991 * 4 2 1 6 6 N 1.46494 * 109.46949 * 179.97438 * 5 4 2 7 7 C 1.35814 * 126.05082 * 124.99914 * 6 5 4 8 8 C 1.35755 * 107.56144 * 180.02562 * 7 6 5 9 9 N 1.40765 * 126.08137 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99854 * 179.97438 * 9 8 7 11 11 O 1.21303 * 120.00450 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72930 * 10 9 8 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99715 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46623 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47205 * 120.00010 * 18 16 14 21 21 H 1.48498 * 109.46958 * 240.00265 * 18 16 14 22 22 C 1.40256 * 107.84136 * 0.24533 * 8 7 6 23 23 N 1.30835 * 108.33208 * 359.58580 * 22 8 7 24 24 H 1.08998 * 109.47332 * 296.04964 * 1 2 3 25 25 H 1.09000 * 109.47259 * 56.04898 * 1 2 3 26 26 H 1.09001 * 109.47632 * 176.04898 * 1 2 3 27 27 H 1.08998 * 109.47709 * 183.95510 * 3 2 1 28 28 H 1.09005 * 109.46702 * 303.95709 * 3 2 1 29 29 H 1.09006 * 109.47115 * 63.94723 * 3 2 1 30 30 H 1.08996 * 109.47202 * 306.04631 * 4 2 1 31 31 H 1.08998 * 109.46702 * 186.04482 * 4 2 1 32 32 H 1.09000 * 109.47117 * 59.99330 * 5 4 2 33 33 H 1.09000 * 109.46677 * 299.99812 * 5 4 2 34 34 H 1.07992 * 126.22132 * 0.06522 * 7 6 5 35 35 H 0.97001 * 119.99661 * 0.02562 * 9 8 7 36 36 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 37 37 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 38 38 H 1.08995 * 109.46638 * 300.00002 * 13 12 10 39 39 H 1.08998 * 109.46846 * 59.99549 * 13 12 10 40 40 H 0.97012 * 120.00031 * 180.02562 * 17 16 14 41 41 H 1.07995 * 125.83761 * 179.76181 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9704 6 7 2.1570 -3.0065 2.1046 7 6 1.4377 -3.8136 2.9266 8 6 2.2939 -4.3315 3.8441 9 7 1.9576 -5.2191 4.8836 10 6 2.9107 -5.6590 5.7288 11 8 4.0583 -5.2897 5.5941 12 6 2.5496 -6.6045 6.8454 13 6 3.8037 -6.9402 7.6551 14 6 3.4426 -7.8862 8.7713 15 1 2.4208 -8.2147 8.8914 16 6 4.4167 -8.3323 9.6391 17 7 5.6608 -7.9318 9.4930 18 14 3.9691 -9.5043 11.0231 19 1 2.5147 -9.7994 10.9707 20 1 4.7357 -10.7668 10.8700 21 1 4.3011 -8.8787 12.3283 22 6 3.5720 -3.8200 3.5759 23 7 3.4901 -3.0334 2.5336 24 1 -0.3634 0.4513 0.9232 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0708 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.5610 -0.3872 2.0628 31 1 3.0796 -0.6611 1.1756 32 1 2.0657 -2.6213 0.0452 33 1 0.5472 -2.3475 0.9324 34 1 0.3775 -4.0086 2.8618 35 1 1.0400 -5.5147 4.9910 36 1 1.8123 -6.1338 7.4959 37 1 2.1322 -7.5198 6.4258 38 1 4.5408 -7.4108 7.0046 39 1 4.2210 -6.0249 8.0747 40 1 6.3463 -8.2459 10.1034 41 1 4.4708 -4.0402 4.1327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589696917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:27 Heat of formation + Delta-G solvation = 45.406622 kcal Electronic energy + Delta-G solvation = -20828.987104 eV Core-core repulsion = 17552.893103 eV Total energy + Delta-G solvation = -3276.094001 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24426 -39.06393 -38.02693 -34.59853 -33.49417 -33.12319 -31.03916 -29.88165 -28.29028 -28.02342 -25.70793 -24.64206 -22.39037 -21.93098 -21.07281 -20.45698 -19.34478 -17.45175 -16.83659 -16.25375 -16.11431 -15.66433 -15.40416 -15.06302 -14.98954 -14.54021 -14.40338 -13.85093 -13.59833 -13.28338 -12.90336 -12.72412 -12.63118 -12.30526 -12.20783 -12.15790 -11.99975 -11.53306 -11.17142 -10.95874 -10.65542 -10.58707 -10.47017 -9.97997 -9.66512 -9.35126 -9.18709 -9.04156 -8.90781 -8.33044 -7.56367 -5.96487 -4.00907 1.79742 2.30980 2.74053 3.32710 3.39590 3.42583 3.47782 3.50813 3.56739 4.25830 4.47471 4.55807 4.65442 4.76769 4.86664 4.89739 5.01332 5.12801 5.15707 5.34547 5.38475 5.38711 5.45347 5.47879 5.49630 5.74334 5.78980 6.18447 6.20441 6.40406 6.43483 6.47175 6.85623 6.94217 7.10400 7.66879 7.74213 7.85055 7.87593 8.06308 8.37451 8.69873 9.07605 9.62774 11.14421 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.057962 B = 0.002367 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.960844 B =11826.144467 C =12059.617832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.042 3.958 5 C 0.148 3.852 6 N -0.378 5.378 7 C 0.001 3.999 8 C 0.018 3.982 9 N -0.658 5.658 10 C 0.512 3.488 11 O -0.521 6.521 12 C -0.127 4.127 13 C 0.036 3.964 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.052 3.948 23 N -0.286 5.286 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.173 0.827 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.260 0.740 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 14.615 -19.027 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.026 3.974 6 N -0.165 5.165 7 C -0.146 4.146 8 C -0.087 4.087 9 N -0.305 5.305 10 C 0.301 3.699 11 O -0.395 6.395 12 C -0.167 4.167 13 C -0.002 4.002 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.135 4.135 23 N -0.108 5.108 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.190 0.810 35 H 0.241 0.759 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.285 15.429 -20.322 28.319 hybrid contribution -1.547 -0.935 2.122 2.788 sum -13.832 14.493 -18.200 27.067 Atomic orbital electron populations 1.22511 0.87323 1.02445 1.00909 1.61908 1.08065 1.14438 1.42584 1.22387 1.01159 0.88043 1.00679 1.22391 1.02158 0.92363 0.91714 1.21504 0.98758 0.90425 0.86724 1.48212 1.05852 1.37189 1.25212 1.21793 0.97944 0.99803 0.95039 1.17910 0.94044 1.01548 0.95225 1.43282 1.12495 1.45831 1.28862 1.21716 0.84642 0.81113 0.82414 1.90548 1.20125 1.56886 1.71961 1.21874 1.03997 0.96608 0.94191 1.18923 0.90291 0.97216 0.93726 1.21245 0.94677 1.27762 1.12861 0.92516 1.25029 0.95017 0.96564 0.97828 1.70009 1.00772 1.44290 1.37662 0.86531 0.78459 0.80818 0.82121 1.19762 1.21031 1.21035 1.24642 0.98943 0.95145 0.94790 1.77345 0.95798 1.22750 1.14909 0.95345 0.91012 0.91135 0.90958 0.91039 0.95425 0.94104 0.89005 0.89076 0.88990 0.81024 0.75865 0.89944 0.89930 0.95653 0.95675 0.92984 0.77572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.32 60.06 0.56 0.65 16 2 N -0.55 -4.01 5.02 -251.26 -1.26 -5.27 16 3 C 0.03 0.16 9.57 60.07 0.57 0.74 16 4 C 0.04 0.37 5.14 -3.82 -0.02 0.35 16 5 C 0.15 1.25 6.44 -4.04 -0.03 1.22 16 6 N -0.38 -4.55 3.70 -61.03 -0.23 -4.77 16 7 C 0.00 0.01 11.52 -16.68 -0.19 -0.18 16 8 C 0.02 0.26 6.90 -83.88 -0.58 -0.32 16 9 N -0.66 -9.41 5.47 -10.03 -0.05 -9.47 16 10 C 0.51 9.59 7.80 -10.98 -0.09 9.50 16 11 O -0.52 -11.74 13.14 5.54 0.07 -11.66 16 12 C -0.13 -2.47 5.64 -27.88 -0.16 -2.63 16 13 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 14 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.05 0.88 10.84 -17.22 -0.19 0.69 16 23 N -0.29 -4.42 12.41 30.70 0.38 -4.04 16 24 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 26 H 0.07 0.32 6.47 -51.93 -0.34 -0.02 16 27 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 29 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.09 0.94 8.06 -51.93 -0.42 0.52 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.54 6.49 -51.93 -0.34 0.20 16 34 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.41 4.21 8.83 -40.82 -0.36 3.85 16 36 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.26 7.49 8.31 -40.81 -0.34 7.15 16 41 H 0.21 3.85 5.92 -52.49 -0.31 3.54 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -34.76 345.15 -7.18 -41.94 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.37 Total: 0.73 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.64 Total: -2.67 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.42 Total: -50.06 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.76 -7.18 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589696917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.349 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds