Wall clock time and date at job start Tue Mar 31 2020 01:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00245 * 2 1 4 4 C 1.46905 * 110.99935 * 123.95154 * 2 1 3 5 5 C 1.53003 * 109.47084 * 66.04991 * 4 2 1 6 6 N 1.46494 * 109.46949 * 179.97438 * 5 4 2 7 7 C 1.35814 * 126.05082 * 124.99914 * 6 5 4 8 8 C 1.35755 * 107.56144 * 180.02562 * 7 6 5 9 9 N 1.40765 * 126.08137 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99854 * 179.97438 * 9 8 7 11 11 O 1.21303 * 120.00450 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72930 * 10 9 8 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99715 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46623 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47205 * 120.00010 * 18 16 14 21 21 H 1.48498 * 109.46958 * 240.00265 * 18 16 14 22 22 C 1.40256 * 107.84136 * 0.24533 * 8 7 6 23 23 N 1.30835 * 108.33208 * 359.58580 * 22 8 7 24 24 H 1.08998 * 109.47332 * 296.04964 * 1 2 3 25 25 H 1.09000 * 109.47259 * 56.04898 * 1 2 3 26 26 H 1.09001 * 109.47632 * 176.04898 * 1 2 3 27 27 H 1.08998 * 109.47709 * 183.95510 * 3 2 1 28 28 H 1.09005 * 109.46702 * 303.95709 * 3 2 1 29 29 H 1.09006 * 109.47115 * 63.94723 * 3 2 1 30 30 H 1.08996 * 109.47202 * 306.04631 * 4 2 1 31 31 H 1.08998 * 109.46702 * 186.04482 * 4 2 1 32 32 H 1.09000 * 109.47117 * 59.99330 * 5 4 2 33 33 H 1.09000 * 109.46677 * 299.99812 * 5 4 2 34 34 H 1.07992 * 126.22132 * 0.06522 * 7 6 5 35 35 H 0.97001 * 119.99661 * 0.02562 * 9 8 7 36 36 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 37 37 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 38 38 H 1.08995 * 109.46638 * 300.00002 * 13 12 10 39 39 H 1.08998 * 109.46846 * 59.99549 * 13 12 10 40 40 H 0.97012 * 120.00031 * 180.02562 * 17 16 14 41 41 H 1.07995 * 125.83761 * 179.76181 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9704 6 7 2.1570 -3.0065 2.1046 7 6 1.4377 -3.8136 2.9266 8 6 2.2939 -4.3315 3.8441 9 7 1.9576 -5.2191 4.8836 10 6 2.9107 -5.6590 5.7288 11 8 4.0583 -5.2897 5.5941 12 6 2.5496 -6.6045 6.8454 13 6 3.8037 -6.9402 7.6551 14 6 3.4426 -7.8862 8.7713 15 1 2.4208 -8.2147 8.8914 16 6 4.4167 -8.3323 9.6391 17 7 5.6608 -7.9318 9.4930 18 14 3.9691 -9.5043 11.0231 19 1 2.5147 -9.7994 10.9707 20 1 4.7357 -10.7668 10.8700 21 1 4.3011 -8.8787 12.3283 22 6 3.5720 -3.8200 3.5759 23 7 3.4901 -3.0334 2.5336 24 1 -0.3634 0.4513 0.9232 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0708 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.5610 -0.3872 2.0628 31 1 3.0796 -0.6611 1.1756 32 1 2.0657 -2.6213 0.0452 33 1 0.5472 -2.3475 0.9324 34 1 0.3775 -4.0086 2.8618 35 1 1.0400 -5.5147 4.9910 36 1 1.8123 -6.1338 7.4959 37 1 2.1322 -7.5198 6.4258 38 1 4.5408 -7.4108 7.0046 39 1 4.2210 -6.0249 8.0747 40 1 6.3463 -8.2459 10.1034 41 1 4.4708 -4.0402 4.1327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589696917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:26 Heat of formation + Delta-G solvation = 18.849123 kcal Electronic energy + Delta-G solvation = -20830.138724 eV Core-core repulsion = 17552.893103 eV Total energy + Delta-G solvation = -3277.245621 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.33911 -40.45962 -38.64421 -35.88815 -35.49314 -34.11733 -32.93938 -30.88151 -29.36521 -28.51454 -27.50647 -25.46212 -24.08128 -22.83752 -21.99394 -21.78869 -20.67819 -18.71177 -18.47081 -17.39408 -17.09425 -16.85225 -16.51080 -16.41734 -16.04605 -15.79446 -15.43773 -14.95824 -14.70601 -14.45271 -14.18010 -14.15485 -13.81297 -13.38787 -13.19166 -13.05565 -12.83709 -12.68432 -12.58769 -12.42321 -12.24952 -11.88880 -11.73236 -11.62754 -11.59709 -11.24459 -10.68169 -10.55141 -10.39627 -9.45998 -8.68898 -8.15811 -6.29374 0.77526 1.40107 1.41822 1.44333 1.45351 1.58559 2.18322 2.28484 2.47092 2.94512 3.17622 3.57202 3.87396 3.91230 4.07789 4.12112 4.19121 4.30703 4.40097 4.47867 4.49503 4.60533 4.64065 4.67499 4.70105 4.81606 4.86212 4.97498 5.04502 5.10908 5.21755 5.53740 5.67467 5.76857 5.87606 5.89916 5.97363 6.11550 6.20263 6.53989 6.72539 6.90042 7.37060 7.40972 8.97015 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.057962 B = 0.002367 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.960844 B =11826.144467 C =12059.617832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.553 5.553 3 C 0.024 3.976 4 C 0.050 3.950 5 C 0.143 3.857 6 N -0.368 5.368 7 C 0.043 3.957 8 C -0.020 4.020 9 N -0.631 5.631 10 C 0.509 3.491 11 O -0.573 6.573 12 C -0.113 4.113 13 C 0.040 3.960 14 C -0.540 4.540 15 H 0.079 0.921 16 C -0.010 4.010 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.251 1.251 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.023 3.977 23 N -0.313 5.313 24 H 0.027 0.973 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.229 0.771 35 H 0.430 0.570 36 H 0.110 0.890 37 H 0.110 0.890 38 H -0.017 1.017 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.465 14.254 -19.978 30.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.277 5.277 3 C -0.124 4.124 4 C -0.079 4.079 5 C 0.023 3.977 6 N -0.154 5.154 7 C -0.105 4.105 8 C -0.125 4.125 9 N -0.278 5.278 10 C 0.299 3.701 11 O -0.451 6.451 12 C -0.153 4.153 13 C 0.002 3.998 14 C -0.578 4.578 15 H 0.097 0.903 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.174 1.174 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.163 4.163 23 N -0.136 5.136 24 H 0.046 0.954 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.150 0.850 34 H 0.245 0.755 35 H 0.269 0.731 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.070 0.930 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.774 15.090 -21.319 31.041 hybrid contribution -0.222 -0.687 2.244 2.358 sum -16.995 14.402 -19.075 29.328 Atomic orbital electron populations 1.22612 0.85795 1.03626 1.01360 1.61942 1.09466 1.14696 1.41615 1.22428 1.00907 0.87871 1.01239 1.22212 1.00708 0.92929 0.92037 1.21860 1.00876 0.89582 0.85402 1.48631 1.04826 1.36539 1.25398 1.22552 0.99535 0.96376 0.92026 1.18049 0.93983 1.03482 0.96955 1.42763 1.12628 1.44821 1.27631 1.21504 0.84576 0.81088 0.82954 1.90564 1.22413 1.58774 1.73346 1.21611 1.00919 0.98432 0.94310 1.18712 0.92491 0.94814 0.93749 1.21762 0.95638 1.27471 1.12888 0.90339 1.26151 0.94792 0.98659 1.01092 1.70193 1.02314 1.46181 1.39181 0.85271 0.79230 0.77823 0.77897 1.17411 1.20820 1.20821 1.24301 0.99379 0.96834 0.95751 1.77296 0.98170 1.23165 1.14991 0.95389 0.90007 0.89667 0.91664 0.89552 0.95608 0.94858 0.91496 0.88766 0.84986 0.75454 0.73149 0.87226 0.87218 0.99847 0.99862 0.92957 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.32 127.69 1.19 1.30 16 2 N -0.55 -7.02 5.02 -948.84 -4.76 -11.78 16 3 C 0.02 0.27 9.57 127.69 1.22 1.49 16 4 C 0.05 0.79 5.14 86.30 0.44 1.24 16 5 C 0.14 1.96 6.44 86.38 0.56 2.51 16 6 N -0.37 -8.00 3.70 -347.00 -1.29 -9.28 16 7 C 0.04 0.82 11.52 83.50 0.96 1.78 16 8 C -0.02 -0.57 6.90 37.62 0.26 -0.31 16 9 N -0.63 -17.01 5.47 -304.04 -1.66 -18.67 16 10 C 0.51 19.39 7.80 87.66 0.68 20.07 16 11 O -0.57 -27.69 13.14 -3.10 -0.04 -27.74 16 12 C -0.11 -4.34 5.64 29.85 0.17 -4.18 16 13 C 0.04 2.20 4.26 29.85 0.13 2.33 16 14 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 15 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 16 C -0.01 -0.57 5.46 84.65 0.46 -0.10 16 17 N -0.94 -59.76 13.29 21.45 0.28 -59.48 16 18 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 19 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 C 0.02 0.82 10.84 85.33 0.92 1.75 16 23 N -0.31 -9.84 12.41 -56.77 -0.70 -10.55 16 24 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 25 H 0.08 0.49 8.12 -2.39 -0.02 0.47 16 26 H 0.08 0.40 6.47 -2.39 -0.02 0.38 16 27 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 28 H 0.09 0.73 8.12 -2.38 -0.02 0.71 16 29 H 0.03 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 31 H 0.07 1.39 8.06 -2.39 -0.02 1.37 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.13 0.81 6.49 -2.39 -0.02 0.80 16 34 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.43 7.31 8.83 -92.71 -0.82 6.49 16 36 H 0.11 3.61 8.14 -2.38 -0.02 3.59 16 37 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 38 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 39 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 40 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 41 H 0.17 7.25 5.92 -2.91 -0.02 7.23 16 Total: -1.00 -82.32 345.15 1.29 -81.03 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.21 Total: 12.49 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 7.23 Total: -2.27 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -8.13 Total: -109.76 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.04 Total: -27.74 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -82.32 1.29 -81.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589696917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.879 kcal (2) G-P(sol) polarization free energy of solvation -82.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds