Wall clock time and date at job start Tue Mar 31 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46502 * 109.47016 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99395 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00575 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99449 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99478 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46722 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47046 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46830 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00567 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99962 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99728 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00081 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47164 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47142 * 120.00046 * 20 18 16 23 23 H 1.48509 * 109.46979 * 239.99468 * 20 18 16 24 24 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 25 25 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 26 26 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 27 27 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 28 28 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 29 29 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 30 30 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 31 31 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 32 32 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 33 33 H 0.96995 * 120.00113 * 359.97438 * 9 8 7 34 34 H 0.96995 * 120.00059 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.47270 * 299.99660 * 13 12 10 36 36 H 1.09001 * 109.47032 * 60.00529 * 13 12 10 37 37 H 1.09002 * 109.47374 * 300.00581 * 14 13 12 38 38 H 1.09007 * 109.46529 * 60.00259 * 14 13 12 39 39 H 1.08997 * 109.46987 * 300.00165 * 15 14 13 40 40 H 1.08993 * 109.47008 * 60.00185 * 15 14 13 41 41 H 0.96996 * 119.99650 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3134 -4.4448 1.4362 10 6 1.2038 -5.1175 2.5989 11 8 1.4771 -4.5669 3.6479 12 7 0.7912 -6.4006 2.5988 13 6 0.6726 -7.1319 3.8627 14 6 0.1881 -8.5563 3.5841 15 6 0.0637 -9.3199 4.9041 16 6 -0.4128 -10.7230 4.6296 17 1 -0.6079 -11.0384 3.6152 18 6 -0.6009 -11.6038 5.6736 19 7 -0.3639 -11.2196 6.9089 20 14 -1.1923 -13.3427 5.3334 21 1 -1.3850 -13.5231 3.8721 22 1 -0.1815 -14.3140 5.8236 23 1 -2.4810 -13.5733 6.0345 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 4.4053 1.3713 0.0112 28 1 4.4212 -1.2961 -0.0013 29 1 0.7995 -2.5863 -0.4346 30 1 2.4874 -3.1293 -0.5903 31 1 2.7594 -2.9894 1.8704 32 1 1.0715 -2.4464 2.0262 33 1 1.0950 -4.8839 0.5994 34 1 0.5727 -6.8397 1.7620 35 1 1.6448 -7.1680 4.3542 36 1 -0.0433 -6.6252 4.5099 37 1 -0.7841 -8.5198 3.0927 38 1 0.9037 -9.0632 2.9366 39 1 1.0358 -9.3564 5.3958 40 1 -0.6520 -8.8128 5.5511 41 1 -0.4966 -11.8391 7.6433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762576708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:10 Heat of formation + Delta-G solvation = 28.362252 kcal Electronic energy + Delta-G solvation = -20426.087128 eV Core-core repulsion = 17149.254027 eV Total energy + Delta-G solvation = -3276.833100 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58929 -39.83122 -36.15320 -35.12427 -33.67076 -33.33098 -32.41599 -31.03634 -28.59044 -27.08439 -26.55013 -23.93893 -22.73721 -21.48654 -20.95883 -20.50441 -19.96713 -18.12897 -17.03884 -16.61014 -16.11829 -15.88226 -15.63137 -15.01232 -14.71203 -14.50454 -14.22993 -14.13923 -13.94556 -13.66006 -13.15820 -12.85419 -12.75996 -12.38503 -12.29257 -11.96128 -11.81023 -11.60567 -10.96087 -10.92745 -10.73720 -10.57696 -10.16133 -9.87242 -9.63368 -9.45567 -9.28090 -9.12008 -8.86173 -8.63810 -8.38245 -6.02677 -4.05730 1.47304 2.15092 2.49051 2.78179 3.29076 3.33348 3.36624 3.39950 4.10216 4.19071 4.41489 4.43186 4.47269 4.53484 4.75328 4.82382 4.98880 5.07994 5.26899 5.33129 5.40491 5.47889 5.58605 5.71602 5.80377 5.83297 6.17096 6.32105 6.32953 6.50845 6.61312 6.63273 6.77567 7.00980 7.02948 7.36959 7.63400 7.75953 7.96391 8.10559 8.37149 8.71265 9.01260 9.58442 11.08632 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.055317 B = 0.002042 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.049378 B =13707.397224 C =13785.046020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.370 5.370 3 N -0.298 5.298 4 C 0.046 3.954 5 C -0.266 4.266 6 C 0.088 3.912 7 C -0.069 4.069 8 C 0.147 3.853 9 N -0.753 5.753 10 C 0.700 3.300 11 O -0.591 6.591 12 N -0.741 5.741 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.184 0.816 28 H 0.149 0.851 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.394 0.606 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 20.437 -18.475 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.153 5.153 3 N -0.119 5.119 4 C -0.139 4.139 5 C -0.296 4.296 6 C -0.040 4.040 7 C -0.108 4.108 8 C 0.022 3.978 9 N -0.410 5.410 10 C 0.400 3.600 11 O -0.469 6.469 12 N -0.395 5.395 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.015 4.015 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.201 0.799 28 H 0.167 0.833 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.229 0.771 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.261 21.904 -17.280 28.090 hybrid contribution -0.003 -2.057 -0.857 2.228 sum 3.259 19.848 -18.137 27.083 Atomic orbital electron populations 1.21894 0.74352 1.04457 1.03763 1.48518 1.06588 1.03385 1.56829 1.77392 1.01956 1.07799 1.24798 1.23859 0.95230 0.95122 0.99681 1.21305 0.96295 0.95138 1.16852 1.20748 0.91408 0.89787 1.02078 1.20424 1.03023 0.89405 0.97951 1.21008 1.01064 0.80941 0.94770 1.45054 1.74438 1.13476 1.08070 1.15992 0.78582 0.81661 0.83805 1.90935 1.56841 1.68649 1.30477 1.45386 1.71780 1.11090 1.11265 1.21524 1.01443 0.92405 0.83496 1.21892 0.99812 0.92043 1.02064 1.19036 0.97585 0.94272 0.90564 1.21241 1.44867 0.96795 0.93100 0.92597 1.25044 0.95610 0.98759 0.95152 1.69979 1.49034 1.35581 0.98629 0.86523 0.78414 0.84656 0.78303 1.19779 1.21000 1.21018 0.90417 0.89178 0.89444 0.79911 0.83327 0.89984 0.88290 0.90894 0.91746 0.77149 0.77303 0.91909 0.91958 0.92781 0.92747 0.96215 0.96235 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.27 59.85 0.67 1.21 16 2 N -0.37 -3.34 4.01 -63.89 -0.26 -3.60 16 3 N -0.30 -3.22 12.58 30.63 0.39 -2.84 16 4 C 0.05 0.41 12.03 -17.36 -0.21 0.20 16 5 C -0.27 -2.24 10.72 -40.01 -0.43 -2.67 16 6 C 0.09 0.72 6.19 -82.27 -0.51 0.21 16 7 C -0.07 -0.40 5.61 -27.88 -0.16 -0.55 16 8 C 0.15 1.32 5.66 -4.04 -0.02 1.29 16 9 N -0.75 -7.24 5.56 -65.22 -0.36 -7.61 16 10 C 0.70 10.30 8.57 -86.91 -0.74 9.56 16 11 O -0.59 -11.55 16.34 5.29 0.09 -11.46 16 12 N -0.74 -10.32 5.56 -65.22 -0.36 -10.68 16 13 C 0.13 2.36 5.67 -4.04 -0.02 2.34 16 14 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.29 6.98 -51.92 -0.36 -0.07 16 27 H 0.18 1.05 8.06 -52.48 -0.42 0.63 16 28 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.08 0.34 6.95 -51.93 -0.36 -0.02 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 2.44 8.49 -40.82 -0.35 2.10 16 34 H 0.39 4.21 8.49 -40.82 -0.35 3.86 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -36.22 351.34 -8.06 -44.28 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.45 Total: -0.02 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.11 Total: -3.71 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.14 Total: -50.72 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.22 -8.06 -44.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762576708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.643 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds