Wall clock time and date at job start Tue Mar 31 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.81519 * 2 1 4 4 C 1.53019 * 109.64568 * 120.53300 * 2 1 3 5 5 C 1.50073 * 110.14854 * 70.24514 * 4 2 1 6 6 C 1.29448 * 124.07378 * 17.12915 * 5 4 2 7 7 C 1.50063 * 124.07366 * 359.53695 * 6 5 4 8 8 C 1.53020 * 110.15313 * 17.12688 * 7 6 5 9 9 H 1.09008 * 109.81867 * 70.34795 * 8 7 6 10 10 C 1.53000 * 109.64893 * 190.88009 * 8 7 6 11 11 O 1.45198 * 109.46949 * 293.94469 * 10 8 7 12 12 C 1.34230 * 117.00175 * 179.97438 * 11 10 8 13 13 O 1.20827 * 119.99565 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00181 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47055 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47055 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37887 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99907 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99654 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47022 * 89.99986 * 22 20 18 24 24 H 1.48502 * 109.46769 * 209.99494 * 22 20 18 25 25 H 1.48495 * 109.47280 * 329.99669 * 22 20 18 26 26 H 1.08998 * 109.47790 * 180.52520 * 1 2 3 27 27 H 1.09000 * 109.46997 * 300.52658 * 1 2 3 28 28 H 1.09003 * 109.47101 * 60.51980 * 1 2 3 29 29 H 1.08999 * 109.36223 * 190.45221 * 4 2 1 30 30 H 1.08997 * 109.35884 * 310.17676 * 4 2 1 31 31 H 1.07995 * 117.96199 * 197.15897 * 5 4 2 32 32 H 1.07994 * 117.96106 * 179.55440 * 6 5 4 33 33 H 1.09001 * 109.35975 * 256.91941 * 7 6 5 34 34 H 1.09002 * 109.36219 * 137.33395 * 7 6 5 35 35 H 1.08995 * 109.47305 * 173.94342 * 10 8 7 36 36 H 1.09003 * 109.46855 * 53.94093 * 10 8 7 37 37 H 1.08996 * 109.47197 * 60.00757 * 14 12 11 38 38 H 1.09001 * 109.47328 * 300.00284 * 14 12 11 39 39 H 1.09001 * 109.47502 * 60.00512 * 15 14 12 40 40 H 1.09001 * 109.47289 * 300.00308 * 15 14 12 41 41 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 42 42 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 43 43 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 44 44 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 45 45 H 0.96999 * 119.99682 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0254 0.0000 4 6 2.0444 -0.7321 1.2413 5 6 1.7697 -2.2029 1.1249 6 6 1.4811 -2.8011 0.0138 7 6 1.3711 -2.1058 -1.3115 8 6 2.0455 -0.7338 -1.2446 9 1 3.1265 -0.8563 -1.1761 10 6 1.6976 0.0721 -2.4977 11 8 2.2887 -0.5637 -3.6616 12 6 2.0758 0.0224 -4.8502 13 8 1.4177 1.0336 -4.9159 14 6 2.6585 -0.5800 -6.1026 15 6 2.2700 0.2768 -7.3092 16 6 2.8611 -0.3353 -8.5808 17 6 2.4731 0.5219 -9.7873 18 6 3.0558 -0.0806 -11.0397 19 1 3.6437 -0.9846 -10.9811 20 6 2.8375 0.5219 -12.2606 21 7 3.3456 -0.0042 -13.3537 22 14 1.8201 2.0852 -12.3621 23 1 2.7102 3.2652 -12.2184 24 1 1.1304 2.1425 -13.6760 25 1 0.8111 2.0907 -11.2727 26 1 -0.3634 -1.0276 0.0094 27 1 -0.3633 0.5220 0.8852 28 1 -0.3633 0.5057 -0.8946 29 1 3.1183 -0.5716 1.3364 30 1 1.5411 -0.3416 2.1257 31 1 1.8152 -2.7993 2.0241 32 1 1.3085 -3.8668 0.0424 33 1 0.3191 -1.9791 -1.5669 34 1 1.8566 -2.7099 -2.0780 35 1 2.0889 1.0846 -2.3989 36 1 0.6147 0.1110 -2.6157 37 1 2.2709 -1.5902 -6.2342 38 1 3.7446 -0.6157 -6.0174 39 1 2.6578 1.2869 -7.1776 40 1 1.1839 0.3129 -7.3946 41 1 3.9471 -0.3716 -8.4957 42 1 2.4729 -1.3452 -8.7123 43 1 1.3871 0.5587 -9.8727 44 1 2.8616 1.5318 -9.6556 45 1 3.1924 0.4198 -14.2125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805869607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:09 Heat of formation + Delta-G solvation = -113.907840 kcal Electronic energy + Delta-G solvation = -21278.093511 eV Core-core repulsion = 18066.338709 eV Total energy + Delta-G solvation = -3211.754802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66225 -39.57711 -36.66382 -35.09406 -32.96214 -32.60919 -31.80038 -30.31073 -28.08392 -26.59593 -25.61820 -23.20236 -22.28191 -20.93510 -20.42881 -20.07887 -17.80685 -17.38108 -16.83482 -16.61098 -16.58589 -16.01377 -15.05940 -14.72840 -14.69603 -14.18765 -13.93240 -13.62426 -13.45460 -12.96490 -12.78117 -12.66999 -12.34966 -12.30883 -12.21659 -12.10062 -11.77492 -11.73012 -11.15957 -11.04329 -10.94540 -10.79430 -10.62899 -10.56784 -10.43460 -10.38288 -9.87624 -9.67949 -9.53013 -9.33521 -9.13918 -8.50249 -6.01226 -3.98859 1.94909 2.26261 2.61243 3.34439 3.41578 3.46989 4.17009 4.21761 4.35714 4.49098 4.73195 4.75023 4.80914 4.87671 4.98193 5.01286 5.12457 5.18036 5.21238 5.25932 5.30504 5.32818 5.33557 5.47911 5.56097 5.59966 5.66277 5.68553 5.78059 5.85378 5.95691 6.00729 6.06214 6.30638 6.32644 6.41318 6.60650 6.61721 6.75991 6.95498 7.35346 7.48056 7.79110 7.83853 8.57299 9.03805 9.61852 11.12205 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.046217 B = 0.002322 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.693022 B =12054.511917 C =12418.037962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.085 4.085 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.088 4.088 8 C -0.082 4.082 9 H 0.085 0.915 10 C 0.070 3.930 11 O -0.360 6.360 12 C 0.460 3.540 13 O -0.509 6.509 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.102 4.102 17 C -0.015 4.015 18 C -0.520 4.520 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.016 0.984 44 H 0.011 0.989 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 -3.116 31.543 31.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.121 4.121 5 C -0.178 4.178 6 C -0.168 4.168 7 C -0.125 4.125 8 C -0.100 4.100 9 H 0.103 0.897 10 C -0.004 4.004 11 O -0.277 6.277 12 C 0.303 3.697 13 O -0.396 6.396 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.558 4.558 19 H 0.090 0.910 20 C -0.137 4.137 21 N -0.544 5.544 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.189 1.189 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.000 -2.785 31.368 31.745 hybrid contribution -0.560 0.851 -0.097 1.023 sum -4.561 -1.935 31.272 31.662 Atomic orbital electron populations 1.21973 0.94742 1.02564 1.01842 1.21151 0.96402 0.99139 0.93719 0.90527 1.20488 1.01185 0.92790 0.97685 1.22012 1.01604 0.96301 0.97857 1.22062 1.00721 0.99593 0.94454 1.20527 1.01186 0.95010 0.95728 1.21266 1.01545 0.95125 0.92072 0.89675 1.23129 0.98418 0.96320 0.82564 1.86509 1.70468 1.54630 1.16081 1.24173 0.77789 0.82638 0.85096 1.90663 1.37334 1.24564 1.87029 1.21575 1.02796 1.01792 0.88799 1.21603 1.01834 0.98826 0.92623 1.21474 0.99858 0.99597 0.93049 1.19578 0.96614 0.95327 0.93760 1.21173 1.32858 1.11735 0.90011 0.91045 1.25052 0.95489 0.97367 0.95752 1.69921 1.45678 1.40412 0.98412 0.86769 0.81137 0.83959 0.77392 1.20321 1.21445 1.18938 0.91781 0.92547 0.92485 0.90735 0.90806 0.88074 0.87917 0.90541 0.90206 0.91266 0.91085 0.87758 0.87761 0.91573 0.91572 0.92596 0.92566 0.96587 0.97023 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.32 37.16 0.31 -0.70 16 2 C -0.09 -0.56 2.71 -90.40 -0.25 -0.81 16 3 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.08 -0.50 5.56 -28.18 -0.16 -0.65 16 5 C -0.16 -1.04 9.40 -35.90 -0.34 -1.37 16 6 C -0.15 -1.06 9.15 -35.90 -0.33 -1.38 16 7 C -0.09 -0.68 4.62 -28.18 -0.13 -0.81 16 8 C -0.08 -0.64 2.28 -90.40 -0.21 -0.85 16 9 H 0.08 0.69 8.13 -51.92 -0.42 0.27 16 10 C 0.07 0.69 4.53 37.16 0.17 0.86 16 11 O -0.36 -4.27 10.01 -39.26 -0.39 -4.66 16 12 C 0.46 6.33 7.96 36.00 0.29 6.62 16 13 O -0.51 -8.52 15.73 -18.75 -0.29 -8.82 16 14 C -0.11 -1.43 5.81 -27.89 -0.16 -1.59 16 15 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 16 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 17 C -0.02 -0.37 4.04 -27.89 -0.11 -0.49 16 18 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 22 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 26 H 0.06 0.44 5.71 -51.93 -0.30 0.14 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 6.80 -51.93 -0.35 0.04 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 31 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.08 0.59 6.86 -51.93 -0.36 0.23 16 34 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.07 0.71 6.86 -51.93 -0.36 0.36 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 40 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -32.39 356.18 -8.87 -41.25 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -8.05 Total: -4.45 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.60 Total: -18.76 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 0.77 Total: -27.50 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.69 Total: -13.47 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.39 -8.87 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805869607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.654 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds