Wall clock time and date at job start Tue Mar 31 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.81519 * 2 1 4 4 C 1.53019 * 109.64568 * 120.53300 * 2 1 3 5 5 C 1.50073 * 110.14854 * 70.24514 * 4 2 1 6 6 C 1.29448 * 124.07378 * 17.12915 * 5 4 2 7 7 C 1.50063 * 124.07366 * 359.53695 * 6 5 4 8 8 C 1.53020 * 110.15313 * 17.12688 * 7 6 5 9 9 H 1.09008 * 109.81867 * 70.34795 * 8 7 6 10 10 C 1.53000 * 109.64893 * 190.88009 * 8 7 6 11 11 O 1.45198 * 109.46949 * 293.94469 * 10 8 7 12 12 C 1.34230 * 117.00175 * 179.97438 * 11 10 8 13 13 O 1.20827 * 119.99565 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00181 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47055 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47055 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37887 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99907 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99654 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47022 * 89.99986 * 22 20 18 24 24 H 1.48502 * 109.46769 * 209.99494 * 22 20 18 25 25 H 1.48495 * 109.47280 * 329.99669 * 22 20 18 26 26 H 1.08998 * 109.47790 * 180.52520 * 1 2 3 27 27 H 1.09000 * 109.46997 * 300.52658 * 1 2 3 28 28 H 1.09003 * 109.47101 * 60.51980 * 1 2 3 29 29 H 1.08999 * 109.36223 * 190.45221 * 4 2 1 30 30 H 1.08997 * 109.35884 * 310.17676 * 4 2 1 31 31 H 1.07995 * 117.96199 * 197.15897 * 5 4 2 32 32 H 1.07994 * 117.96106 * 179.55440 * 6 5 4 33 33 H 1.09001 * 109.35975 * 256.91941 * 7 6 5 34 34 H 1.09002 * 109.36219 * 137.33395 * 7 6 5 35 35 H 1.08995 * 109.47305 * 173.94342 * 10 8 7 36 36 H 1.09003 * 109.46855 * 53.94093 * 10 8 7 37 37 H 1.08996 * 109.47197 * 60.00757 * 14 12 11 38 38 H 1.09001 * 109.47328 * 300.00284 * 14 12 11 39 39 H 1.09001 * 109.47502 * 60.00512 * 15 14 12 40 40 H 1.09001 * 109.47289 * 300.00308 * 15 14 12 41 41 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 42 42 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 43 43 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 44 44 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 45 45 H 0.96999 * 119.99682 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0254 0.0000 4 6 2.0444 -0.7321 1.2413 5 6 1.7697 -2.2029 1.1249 6 6 1.4811 -2.8011 0.0138 7 6 1.3711 -2.1058 -1.3115 8 6 2.0455 -0.7338 -1.2446 9 1 3.1265 -0.8563 -1.1761 10 6 1.6976 0.0721 -2.4977 11 8 2.2887 -0.5637 -3.6616 12 6 2.0758 0.0224 -4.8502 13 8 1.4177 1.0336 -4.9159 14 6 2.6585 -0.5800 -6.1026 15 6 2.2700 0.2768 -7.3092 16 6 2.8611 -0.3353 -8.5808 17 6 2.4731 0.5219 -9.7873 18 6 3.0558 -0.0806 -11.0397 19 1 3.6437 -0.9846 -10.9811 20 6 2.8375 0.5219 -12.2606 21 7 3.3456 -0.0042 -13.3537 22 14 1.8201 2.0852 -12.3621 23 1 2.7102 3.2652 -12.2184 24 1 1.1304 2.1425 -13.6760 25 1 0.8111 2.0907 -11.2727 26 1 -0.3634 -1.0276 0.0094 27 1 -0.3633 0.5220 0.8852 28 1 -0.3633 0.5057 -0.8946 29 1 3.1183 -0.5716 1.3364 30 1 1.5411 -0.3416 2.1257 31 1 1.8152 -2.7993 2.0241 32 1 1.3085 -3.8668 0.0424 33 1 0.3191 -1.9791 -1.5669 34 1 1.8566 -2.7099 -2.0780 35 1 2.0889 1.0846 -2.3989 36 1 0.6147 0.1110 -2.6157 37 1 2.2709 -1.5902 -6.2342 38 1 3.7446 -0.6157 -6.0174 39 1 2.6578 1.2869 -7.1776 40 1 1.1839 0.3129 -7.3946 41 1 3.9471 -0.3716 -8.4957 42 1 2.4729 -1.3452 -8.7123 43 1 1.3871 0.5587 -9.8727 44 1 2.8616 1.5318 -9.6556 45 1 3.1924 0.4198 -14.2125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805869607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:08 Heat of formation + Delta-G solvation = -129.979809 kcal Electronic energy + Delta-G solvation = -21278.790444 eV Core-core repulsion = 18066.338709 eV Total energy + Delta-G solvation = -3212.451735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63260 -40.24251 -37.70624 -36.64274 -34.64658 -33.51808 -32.45145 -31.91464 -28.81276 -27.88274 -26.57821 -24.33856 -23.34967 -21.89074 -21.55952 -21.40264 -18.90749 -18.63203 -18.14131 -17.57766 -17.51231 -16.85336 -16.30304 -16.23810 -15.45717 -15.22679 -14.91709 -14.79116 -14.32235 -14.12185 -13.98894 -13.75830 -13.65783 -13.48861 -13.21876 -12.89143 -12.86227 -12.74638 -12.36042 -12.31331 -12.12610 -11.77605 -11.75805 -11.72325 -11.54303 -11.40146 -11.32239 -11.26923 -11.11045 -10.98531 -10.75340 -9.83979 -8.28856 -6.32004 1.19508 1.35641 1.37182 1.44524 1.49746 1.66995 2.36539 3.06506 3.54187 3.59758 3.71096 3.88627 4.01758 4.09093 4.12855 4.19303 4.28125 4.36136 4.46884 4.50609 4.57747 4.60991 4.62217 4.70801 4.74778 4.79153 4.81463 4.98692 5.02345 5.09363 5.10102 5.14320 5.17921 5.21429 5.25763 5.26904 5.45699 5.47306 5.60017 5.65182 5.69025 5.81009 6.10059 6.30252 6.74906 6.76528 7.32638 8.87690 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.046217 B = 0.002322 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.693022 B =12054.511917 C =12418.037962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.085 4.085 5 C -0.158 4.158 6 C -0.163 4.163 7 C -0.087 4.087 8 C -0.076 4.076 9 H 0.084 0.916 10 C 0.067 3.933 11 O -0.356 6.356 12 C 0.465 3.535 13 O -0.543 6.543 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.094 4.094 17 C -0.017 4.017 18 C -0.530 4.530 19 H 0.037 0.963 20 C 0.001 3.999 21 N -0.951 5.951 22 Si 0.949 3.051 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.250 1.250 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.015 0.985 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -2.524 33.720 34.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.100 0.900 4 C -0.122 4.122 5 C -0.176 4.176 6 C -0.181 4.181 7 C -0.123 4.123 8 C -0.094 4.094 9 H 0.102 0.898 10 C -0.007 4.007 11 O -0.272 6.272 12 C 0.310 3.690 13 O -0.433 6.433 14 C -0.143 4.143 15 C -0.139 4.139 16 C -0.132 4.132 17 C -0.055 4.055 18 C -0.568 4.568 19 H 0.055 0.945 20 C -0.195 4.195 21 N -0.592 5.592 22 Si 0.773 3.227 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.174 1.174 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.472 -2.213 33.576 33.944 hybrid contribution -0.363 0.588 -0.740 1.012 sum -4.835 -1.626 32.836 33.230 Atomic orbital electron populations 1.21961 0.94778 1.02346 1.01923 1.21167 0.96344 0.99392 0.93368 0.89984 1.20530 1.01701 0.92312 0.97632 1.22205 1.00541 0.96781 0.98044 1.22091 1.01808 0.99977 0.94258 1.20489 1.00874 0.94859 0.96126 1.21251 1.01496 0.95098 0.91576 0.89783 1.23321 0.98187 0.96659 0.82518 1.86502 1.70238 1.54414 1.16072 1.24273 0.76967 0.81977 0.85807 1.90655 1.39014 1.26118 1.87541 1.21496 1.04164 1.01822 0.86860 1.21387 1.01019 0.98892 0.92634 1.21329 1.00299 0.99002 0.92562 1.19578 0.96159 0.96018 0.93713 1.21549 1.32312 1.10745 0.92232 0.94503 1.26026 0.96918 1.01215 0.95351 1.70066 1.47505 1.42424 0.99182 0.85673 0.79732 0.79425 0.77919 1.19231 1.20880 1.17407 0.92153 0.91615 0.93252 0.90107 0.89581 0.86973 0.87392 0.90867 0.90975 0.91391 0.91399 0.85605 0.85595 0.92259 0.92343 0.92218 0.92234 0.96605 0.96701 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.32 71.98 0.60 -1.20 16 2 C -0.08 -0.97 2.71 -10.65 -0.03 -0.99 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 4 C -0.09 -0.81 5.56 29.66 0.16 -0.65 16 5 C -0.16 -1.74 9.40 27.03 0.25 -1.48 16 6 C -0.16 -2.07 9.15 27.03 0.25 -1.83 16 7 C -0.09 -1.25 4.62 29.66 0.14 -1.11 16 8 C -0.08 -1.09 2.28 -10.65 -0.02 -1.12 16 9 H 0.08 1.25 8.13 -2.38 -0.02 1.23 16 10 C 0.07 1.26 4.53 71.98 0.33 1.58 16 11 O -0.36 -7.93 10.01 -51.41 -0.51 -8.44 16 12 C 0.46 12.09 7.96 71.23 0.57 12.65 16 13 O -0.54 -17.71 15.73 21.96 0.35 -17.37 16 14 C -0.11 -2.46 5.81 29.85 0.17 -2.29 16 15 C -0.10 -3.14 4.50 30.60 0.14 -3.00 16 16 C -0.09 -3.52 5.15 30.60 0.16 -3.36 16 17 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 18 C -0.53 -31.01 9.66 25.60 0.25 -30.77 16 19 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 20 C 0.00 0.09 5.47 84.66 0.46 0.55 16 21 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 22 Si 0.95 45.56 27.47 68.60 1.88 47.45 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 26 H 0.06 0.76 5.71 -2.39 -0.01 0.74 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.65 6.80 -2.39 -0.02 0.63 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.64 8.11 -2.39 -0.02 0.62 16 31 H 0.11 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.07 1.08 6.86 -2.39 -0.02 1.07 16 34 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 35 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 36 H 0.07 1.33 6.86 -2.39 -0.02 1.31 16 37 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 40 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 43 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 44 H 0.01 0.69 7.57 -2.38 -0.02 0.67 16 45 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -69.68 356.18 6.43 -63.25 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.87 Total: 9.00 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 3.54 Total: -33.72 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.30 Total: -60.16 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.17 Total: -25.81 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.45 kcal Total: -69.68 6.43 -63.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805869607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.733 kcal (2) G-P(sol) polarization free energy of solvation -69.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds