Wall clock time and date at job start Tue Mar 31 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.50703 * 109.46801 * 184.99876 * 3 2 1 6 6 H 1.08000 * 120.00226 * 239.99505 * 5 3 2 7 7 C 1.37876 * 119.99741 * 60.00200 * 5 3 2 8 8 N 1.31511 * 120.00557 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47337 * 59.99624 * 9 7 5 11 11 H 1.48502 * 109.47220 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47168 * 299.99658 * 9 7 5 13 13 O 1.45194 * 109.47550 * 64.99895 * 3 2 1 14 14 C 1.34227 * 117.00195 * 270.00175 * 13 3 2 15 15 O 1.20824 * 120.00013 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00334 * 179.97438 * 14 13 3 17 17 C 1.50226 * 117.30589 * 249.61353 * 16 14 13 18 18 H 1.08995 * 113.55742 * 145.03275 * 17 16 14 19 19 C 1.48077 * 129.91879 * 354.02253 * 17 16 14 20 20 C 1.54167 * 112.41467 * 225.43141 * 19 17 16 21 21 C 1.54368 * 109.16700 * 63.49472 * 20 19 17 22 22 C 1.51241 * 111.06833 * 258.99289 * 21 20 19 23 23 C 1.49154 * 120.88982 * 35.28664 * 22 21 20 24 24 C 1.54822 * 109.51485 * 82.02489 * 23 22 21 25 25 C 1.50911 * 117.30934 * 179.21850 * 16 14 13 26 26 H 1.09003 * 117.53980 * 0.86401 * 25 16 14 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 32 32 H 0.96999 * 120.00539 * 180.02562 * 8 7 5 33 33 H 1.09000 * 115.43227 * 34.40998 * 16 14 13 34 34 H 1.09002 * 109.26496 * 104.44179 * 19 17 16 35 35 H 1.08996 * 108.50042 * 345.89592 * 19 17 16 36 36 H 1.09004 * 109.52030 * 303.58700 * 20 19 17 37 37 H 1.08999 * 109.57320 * 183.43521 * 20 19 17 38 38 H 1.08997 * 109.16463 * 138.58568 * 21 20 19 39 39 H 1.09005 * 109.16340 * 19.39964 * 21 20 19 40 40 H 1.08990 * 107.13138 * 272.35760 * 22 21 20 41 41 H 1.08999 * 107.09078 * 158.17940 * 22 21 20 42 42 H 1.08999 * 109.46731 * 322.01358 * 23 22 21 43 43 H 1.09003 * 109.45300 * 202.02969 * 23 22 21 44 44 H 1.08998 * 110.85610 * 185.30546 * 24 23 22 45 45 H 1.08999 * 110.85768 * 61.83961 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1472 -0.2348 11 1 6.3978 0.2165 -2.6504 12 1 6.4995 2.2813 -1.3822 13 8 1.6559 2.0917 1.2406 14 6 0.4727 2.7255 1.2559 15 8 -0.2189 2.7378 0.2652 16 6 0.0069 3.4218 2.5086 17 6 -1.1559 2.8161 3.2419 18 1 -1.0893 2.9192 4.3249 19 6 -2.0244 1.6761 2.8696 20 6 -3.5195 1.9787 3.0930 21 6 -3.9462 3.1369 2.1660 22 6 -4.0150 4.4434 2.9247 23 6 -3.0492 4.7440 4.0209 24 6 -1.7263 5.2721 3.4143 25 6 -1.3243 4.1304 2.4527 26 1 -1.8796 4.0866 1.5157 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0619 -2.9495 33 1 0.7927 3.8803 3.1090 34 1 -1.7484 0.8047 3.4634 35 1 -1.8643 1.4490 1.8156 36 1 -3.6819 2.2650 4.1321 37 1 -4.1099 1.0917 2.8632 38 1 -4.9271 2.9157 1.7452 39 1 -3.2234 3.2315 1.3556 40 1 -5.0159 4.5155 3.3499 41 1 -3.9276 5.2449 2.1911 42 1 -2.8508 3.8355 4.5896 43 1 -3.4735 5.5005 4.6812 44 1 -0.9722 5.4106 4.1891 45 1 -1.8933 6.1998 2.8670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850979120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:02 Heat of formation + Delta-G solvation = -82.534225 kcal Electronic energy + Delta-G solvation = -23406.968519 eV Core-core repulsion = 20196.574179 eV Total energy + Delta-G solvation = -3210.394340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65088 -38.86220 -35.86706 -34.66629 -33.45466 -33.22539 -31.33912 -28.60560 -27.33475 -26.12428 -24.40147 -23.06838 -21.83653 -20.63463 -20.04985 -19.52728 -18.82725 -16.78844 -16.62892 -15.76574 -15.58081 -15.03050 -14.98881 -14.46915 -14.35477 -13.77897 -13.48860 -13.26647 -12.94306 -12.78784 -12.23858 -12.11605 -11.87439 -11.48990 -11.41343 -11.32808 -11.28495 -11.18278 -10.96584 -10.84388 -10.74775 -10.64120 -10.49803 -10.32145 -10.21821 -9.82269 -9.67219 -9.57878 -9.32365 -9.19903 -8.77850 -8.42913 -6.16336 -4.23374 2.87409 3.27415 3.30810 3.33035 3.55450 3.94562 4.34543 4.52435 4.69132 4.81619 4.88748 4.94455 5.06181 5.15215 5.17717 5.26079 5.38954 5.51389 5.59674 5.70944 5.73028 5.84472 5.85433 5.91555 5.97941 6.00664 6.12334 6.18376 6.20115 6.25284 6.26856 6.31331 6.34415 6.46654 6.54918 6.56639 6.92224 7.00076 7.19811 7.30450 7.64264 7.76832 7.98944 8.19137 8.69193 8.94540 9.41870 10.90344 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.032506 B = 0.004233 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.168250 B = 6612.668327 C = 7051.054652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.352 6.352 14 C 0.480 3.520 15 O -0.516 6.516 16 C -0.122 4.122 17 C -0.138 4.138 18 H 0.097 0.903 19 C -0.096 4.096 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.086 4.086 25 C -0.138 4.138 26 H 0.127 0.873 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.128 0.872 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.881 5.899 11.741 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.268 6.268 14 C 0.323 3.677 15 O -0.406 6.406 16 C -0.141 4.141 17 C -0.156 4.156 18 H 0.115 0.885 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.123 4.123 25 C -0.155 4.155 26 H 0.145 0.855 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.064 5.765 11.240 18.173 hybrid contribution 1.014 -0.147 -0.278 1.062 sum -12.050 5.618 10.962 17.232 Atomic orbital electron populations 1.21910 0.98424 0.98938 1.00888 1.22005 0.92642 0.99388 1.03264 1.20656 0.94928 0.88756 0.78706 0.93591 1.21019 0.89764 1.38981 1.06221 0.91426 1.24874 0.99183 0.94769 0.95054 1.69879 1.35439 1.37804 1.09487 0.86352 0.83963 0.78478 0.77450 1.19948 1.21038 1.19996 1.86461 1.34073 1.62325 1.43990 1.22236 0.80696 0.76668 0.88070 1.90582 1.55664 1.58868 1.35529 1.21237 0.93605 1.02424 0.96799 1.20857 0.98918 0.97599 0.98223 0.88467 1.20357 0.93702 0.96394 1.02906 1.21918 0.94793 0.98036 0.99793 1.21669 1.01403 0.94073 0.98856 1.20340 0.98854 0.97948 0.98105 1.21279 0.95213 1.01132 0.97663 1.21987 0.96944 0.96299 0.97115 1.23097 0.96939 0.94384 1.01122 0.85506 0.92920 0.94945 0.94528 0.87414 0.94058 0.92367 0.85450 0.91876 0.91204 0.91754 0.91944 0.92316 0.90784 0.93616 0.92910 0.91016 0.92144 0.91314 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.57 37.16 0.32 -2.87 16 2 C -0.14 -3.40 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 5.98 2.25 -27.88 -0.06 5.92 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.79 8.90 -34.44 -0.31 -15.10 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.26 11.29 55.43 0.63 -24.63 16 9 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 O -0.35 -8.56 9.81 -39.25 -0.38 -8.95 16 14 C 0.48 10.12 5.62 36.00 0.20 10.32 16 15 O -0.52 -11.85 12.97 -18.75 -0.24 -12.10 16 16 C -0.12 -1.91 6.02 -94.20 -0.57 -2.47 16 17 C -0.14 -1.79 3.63 -93.75 -0.34 -2.13 16 18 H 0.10 1.09 7.24 -51.93 -0.38 0.71 16 19 C -0.10 -1.26 5.37 -28.51 -0.15 -1.41 16 20 C -0.11 -1.14 5.68 -25.40 -0.14 -1.29 16 21 C -0.12 -1.32 5.38 -26.90 -0.14 -1.46 16 22 C -0.11 -1.08 4.44 -29.51 -0.13 -1.21 16 23 C -0.12 -1.02 5.43 -27.66 -0.15 -1.17 16 24 C -0.09 -0.85 6.20 -24.93 -0.15 -1.00 16 25 C -0.14 -1.80 3.98 -90.19 -0.36 -2.16 16 26 H 0.13 1.88 4.98 -51.93 -0.26 1.62 16 27 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.77 4.53 -51.93 -0.24 0.53 16 30 H 0.11 2.93 5.95 -51.93 -0.31 2.63 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.13 1.79 8.14 -51.93 -0.42 1.36 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.12 5.67 -51.93 -0.29 0.83 16 36 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.96 5.22 -51.93 -0.27 0.69 16 40 H 0.04 0.39 8.12 -51.93 -0.42 -0.04 16 41 H 0.05 0.51 7.84 -51.93 -0.41 0.10 16 42 H 0.07 0.64 4.58 -51.93 -0.24 0.40 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -29.57 332.00 -9.52 -39.09 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.27 Total: 3.33 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.23 Total: -17.92 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.63 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.63 Total: -21.05 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.57 -9.52 -39.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.440 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds