Wall clock time and date at job start Tue Mar 31 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47188 * 299.99622 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99725 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 14 13 11 16 16 C 1.53004 * 109.47278 * 300.00073 * 15 14 13 17 17 C 1.52999 * 109.47194 * 300.00130 * 16 15 14 18 18 C 1.52998 * 109.47153 * 179.97438 * 17 16 15 19 19 C 1.53788 * 113.61033 * 157.49625 * 18 17 16 20 20 C 1.53779 * 87.07691 * 220.02032 * 19 18 17 21 21 C 1.53776 * 113.61238 * 60.00149 * 18 17 16 22 22 C 1.53006 * 109.47148 * 59.99641 * 17 16 15 23 23 C 1.52998 * 109.47063 * 300.00349 * 22 17 16 24 24 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 26 26 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 27 27 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.47372 * 34.71852 * 14 13 11 30 30 H 1.08997 * 109.47293 * 60.00168 * 15 14 13 31 31 H 1.09003 * 109.47189 * 180.02562 * 15 14 13 32 32 H 1.09000 * 109.47238 * 179.97438 * 16 15 14 33 33 H 1.09003 * 109.46809 * 60.00014 * 16 15 14 34 34 H 1.09003 * 109.47147 * 299.99677 * 17 16 15 35 35 H 1.08993 * 112.84985 * 288.80077 * 18 17 16 36 36 H 1.08995 * 113.61915 * 334.56897 * 19 18 17 37 37 H 1.08997 * 113.61033 * 105.47503 * 19 18 17 38 38 H 1.09007 * 113.61749 * 270.88116 * 20 19 18 39 39 H 1.09002 * 113.61571 * 139.98400 * 20 19 18 40 40 H 1.08999 * 113.61907 * 254.52334 * 21 18 17 41 41 H 1.08997 * 113.61698 * 25.34704 * 21 18 17 42 42 H 1.08997 * 109.47326 * 180.02562 * 22 17 16 43 43 H 1.09003 * 109.47067 * 59.99987 * 22 17 16 44 44 H 1.09003 * 109.46883 * 299.99751 * 23 22 17 45 45 H 1.08997 * 109.47445 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 1.8536 -7.7341 1.4313 16 6 3.1383 -7.6508 2.2580 17 6 4.2003 -8.5648 1.6436 18 6 5.4852 -8.4810 2.4700 19 6 6.4025 -9.7048 2.3083 20 6 6.6700 -9.6054 3.8194 21 6 5.3038 -8.9091 3.9358 22 6 4.4878 -8.1197 0.2082 23 6 3.2030 -8.2030 -0.6185 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 3.1566 -3.4356 0.0009 28 1 3.5831 -5.7306 0.0012 29 1 1.2256 -7.3484 -0.5930 30 1 1.0970 -7.0830 1.8690 31 1 1.4906 -8.7619 1.4271 32 1 2.9334 -7.9675 3.2807 33 1 3.5016 -6.6232 2.2622 34 1 3.8370 -9.5925 1.6395 35 1 6.0017 -7.5283 2.3540 36 1 5.8730 -10.6120 2.0173 37 1 7.2830 -9.5124 1.6954 38 1 7.5117 -8.9607 4.0724 39 1 6.7111 -10.5728 4.3201 40 1 5.2975 -8.0745 4.6369 41 1 4.4731 -9.5976 4.0900 42 1 5.2440 -8.7711 -0.2297 43 1 4.8511 -7.0920 0.2124 44 1 2.8397 -9.2307 -0.6226 45 1 3.4076 -7.8855 -1.6409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854026921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:31 Heat of formation + Delta-G solvation = -44.343876 kcal Electronic energy + Delta-G solvation = -22336.485908 eV Core-core repulsion = 19160.040376 eV Total energy + Delta-G solvation = -3176.445531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26711 -39.03472 -37.28198 -34.08512 -33.17926 -32.21415 -30.85367 -29.90175 -26.93572 -25.87214 -25.06478 -22.74567 -22.48674 -21.48333 -20.45756 -19.60472 -18.95311 -18.06968 -16.24080 -15.85406 -15.66346 -15.30381 -14.98899 -14.65703 -14.41783 -13.98099 -13.60024 -13.25649 -13.17798 -13.03141 -12.66705 -12.57770 -12.25017 -11.92845 -11.87409 -11.81121 -11.63912 -11.17860 -11.03932 -10.89592 -10.87742 -10.70145 -10.64736 -10.48557 -10.26805 -9.98604 -9.76860 -9.31580 -9.29865 -8.70363 -8.57256 -7.68664 -6.12281 -4.18412 3.25886 3.32292 3.35441 3.51531 4.04674 4.33072 4.35685 4.39417 4.46984 4.61572 4.74298 4.87546 4.89708 5.15137 5.23432 5.23927 5.30018 5.33830 5.44346 5.47729 5.51860 5.53082 5.57645 5.63849 5.65937 5.74619 5.78062 5.86355 5.98042 6.07280 6.08700 6.19570 6.26953 6.29786 6.44748 6.45938 7.05579 7.20803 7.58433 7.62028 7.62413 7.97373 8.10801 8.81777 9.02833 9.40399 9.55213 10.98087 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.003357 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.920575 B = 8338.442723 C = 9016.540398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.732 5.732 11 C 0.692 3.308 12 O -0.602 6.602 13 N -0.749 5.749 14 C 0.167 3.833 15 C -0.131 4.131 16 C -0.109 4.109 17 C -0.075 4.075 18 C -0.104 4.104 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.112 4.112 23 C -0.126 4.126 24 H 0.265 0.735 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.385 0.615 28 H 0.388 0.612 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.237 -20.364 3.991 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.384 5.384 11 C 0.392 3.608 12 O -0.482 6.482 13 N -0.407 5.407 14 C 0.061 3.939 15 C -0.170 4.170 16 C -0.147 4.147 17 C -0.094 4.094 18 C -0.122 4.122 19 C -0.174 4.174 20 C -0.183 4.183 21 C -0.174 4.174 22 C -0.150 4.150 23 C -0.164 4.164 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.217 0.783 28 H 0.222 0.778 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.925 -20.395 3.986 23.959 hybrid contribution 1.297 1.151 0.038 1.734 sum 13.222 -19.244 4.024 23.692 Atomic orbital electron populations 1.69996 1.06076 1.27081 1.49178 1.24950 0.94908 0.99387 0.94847 0.86367 0.79806 0.83049 0.77705 1.19685 1.20838 1.20838 1.21276 0.93274 0.90493 1.52789 0.91961 1.18950 0.87799 0.81135 0.97502 1.45711 1.10628 1.04553 1.77471 1.16190 0.85307 0.81076 0.78214 1.90859 1.14302 1.84248 1.58770 1.45278 1.08558 1.04931 1.81894 1.20616 0.97177 0.80179 0.95962 1.21939 0.97897 1.01107 0.96048 1.21488 0.94740 0.99945 0.98511 1.21171 0.94379 0.99567 0.94238 1.22586 0.96058 0.98330 0.95275 1.22950 0.99593 0.98516 0.96353 1.22821 0.97858 1.00705 0.96871 1.22913 0.97268 1.00332 0.96889 1.21543 0.97170 1.01335 0.94957 1.21824 0.95488 0.99828 0.99288 0.92565 0.95848 0.95842 0.78336 0.77755 0.89833 0.91159 0.91785 0.92301 0.91765 0.91340 0.89397 0.90291 0.91830 0.90431 0.91820 0.91669 0.90209 0.91950 0.92054 0.90804 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 10 N -0.73 -16.00 5.55 -66.41 -0.37 -16.37 16 11 C 0.69 14.51 8.53 -86.92 -0.74 13.76 16 12 O -0.60 -15.25 16.00 5.28 0.08 -15.17 16 13 N -0.75 -11.29 4.24 -58.68 -0.25 -11.54 16 14 C 0.17 2.19 2.78 -67.93 -0.19 2.00 16 15 C -0.13 -1.63 5.61 -26.73 -0.15 -1.78 16 16 C -0.11 -1.17 4.85 -26.73 -0.13 -1.30 16 17 C -0.08 -0.64 1.94 -90.62 -0.18 -0.82 16 18 C -0.10 -0.83 3.13 -89.81 -0.28 -1.11 16 19 C -0.14 -0.98 7.63 -25.92 -0.20 -1.17 16 20 C -0.15 -1.03 8.08 -25.92 -0.21 -1.24 16 21 C -0.14 -1.08 6.68 -25.92 -0.17 -1.25 16 22 C -0.11 -0.96 5.03 -26.73 -0.13 -1.09 16 23 C -0.13 -1.21 5.61 -26.73 -0.15 -1.36 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.38 7.23 8.34 -40.82 -0.34 6.89 16 28 H 0.39 4.88 6.88 -40.82 -0.28 4.60 16 29 H 0.08 1.29 7.57 -51.93 -0.39 0.90 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 33 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 34 H 0.07 0.58 7.94 -51.93 -0.41 0.16 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.54 7.96 -51.93 -0.41 0.13 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.54 6.51 -51.93 -0.34 0.21 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -32.15 351.91 -10.48 -42.63 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.99 Total: 6.48 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.98 Total: -1.67 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.12 Total: -53.65 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.15 -10.48 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854026921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.714 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds