Wall clock time and date at job start Tue Mar 31 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00484 * 2 1 4 4 H 1.48502 * 109.47006 * 270.00004 * 3 2 1 5 5 H 1.48496 * 109.47290 * 29.99818 * 3 2 1 6 6 H 1.48495 * 109.47098 * 150.00142 * 3 2 1 7 7 C 1.37884 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99400 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00103 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47150 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47057 * 179.97438 * 10 9 7 12 12 C 1.34229 * 117.00030 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99639 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00006 * 180.02562 * 12 11 10 15 15 C 1.53004 * 109.46931 * 184.82942 * 14 12 11 16 16 C 1.52995 * 109.47222 * 295.49498 * 15 14 12 17 17 C 1.53779 * 113.61820 * 279.14193 * 16 15 14 18 18 C 1.53956 * 87.02061 * 220.04636 * 17 16 15 19 19 C 1.53781 * 113.61649 * 181.53099 * 16 15 14 20 20 C 1.52995 * 109.47379 * 55.49910 * 15 14 12 21 21 C 1.53783 * 113.61555 * 156.26999 * 20 15 14 22 22 C 1.53958 * 87.01713 * 220.04660 * 21 20 15 23 23 C 1.53779 * 87.11327 * 25.36446 * 22 21 20 24 24 H 0.96999 * 119.99074 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46894 * 59.99781 * 9 7 2 26 26 H 1.08993 * 109.46887 * 299.99894 * 9 7 2 27 27 H 1.08998 * 109.46670 * 60.00140 * 10 9 7 28 28 H 1.08997 * 109.47385 * 300.00394 * 10 9 7 29 29 H 1.08999 * 109.47179 * 64.82949 * 14 12 11 30 30 H 1.08999 * 109.47511 * 304.83002 * 14 12 11 31 31 H 1.09000 * 109.46878 * 175.50212 * 15 14 12 32 32 H 1.09004 * 112.84777 * 50.33470 * 16 15 14 33 33 H 1.09001 * 113.61495 * 334.56729 * 17 16 15 34 34 H 1.09002 * 113.62137 * 105.46867 * 17 16 15 35 35 H 1.08998 * 113.53723 * 270.80964 * 18 17 16 36 36 H 1.08996 * 113.74624 * 139.94166 * 18 17 16 37 37 H 1.09000 * 113.61330 * 254.52940 * 19 16 15 38 38 H 1.08997 * 113.61064 * 25.43449 * 19 16 15 39 39 H 1.09003 * 112.85015 * 287.46446 * 20 15 14 40 40 H 1.08999 * 113.61012 * 334.56407 * 21 20 15 41 41 H 1.09001 * 113.61526 * 105.47385 * 21 20 15 42 42 H 1.08997 * 113.53886 * 270.80788 * 22 21 20 43 43 H 1.09005 * 113.74071 * 139.94456 * 22 21 20 44 44 H 1.08996 * 113.61585 * 220.09067 * 23 22 21 45 45 H 1.08999 * 113.61666 * 89.18213 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0214 -2.6368 -0.0010 11 8 5.4734 -2.6369 -0.0022 12 6 6.0827 -3.8330 -0.0017 13 8 5.4244 -4.8462 -0.0008 14 6 7.5875 -3.9119 -0.0022 15 6 8.0214 -5.3742 -0.1230 16 6 7.5655 -6.1455 1.1171 17 6 8.4926 -5.9647 2.3306 18 6 8.2837 -7.4638 2.6123 19 6 7.9865 -7.6246 1.1120 20 6 7.3874 -5.9930 -1.3702 21 6 8.1585 -7.2066 -1.9158 22 6 7.8675 -6.6568 -3.3241 23 6 7.7580 -5.2673 -2.6744 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6806 0.8889 26 1 3.8745 -0.6803 -0.8911 27 1 3.6576 -3.1507 -0.8907 28 1 3.6583 -3.1505 0.8892 29 1 7.9737 -3.4939 0.9274 30 1 7.9809 -3.3454 -0.8463 31 1 9.1072 -5.4255 -0.2038 32 1 6.5109 -5.9925 1.3468 33 1 9.5179 -5.7095 2.0626 34 1 8.0810 -5.3131 3.1015 35 1 7.4259 -7.6710 3.2520 36 1 9.1876 -7.9797 2.9360 37 1 7.1667 -8.3111 0.9005 38 1 8.8730 -7.8240 0.5102 39 1 6.3177 -6.1700 -1.2579 40 1 9.2171 -7.2039 -1.6561 41 1 7.6734 -8.1608 -1.7098 42 1 6.9294 -7.0165 -3.7466 43 1 8.7062 -6.7514 -4.0140 44 1 6.9502 -4.6582 -3.0799 45 1 8.7070 -4.7336 -2.6225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859823528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:31 Heat of formation + Delta-G solvation = -71.831706 kcal Electronic energy + Delta-G solvation = -22557.200913 eV Core-core repulsion = 19347.270669 eV Total energy + Delta-G solvation = -3209.930244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.78638 -39.22710 -37.84319 -36.16361 -33.31967 -32.83331 -30.74586 -27.58848 -25.91858 -25.51376 -24.87176 -24.59065 -21.95156 -20.67370 -20.28590 -19.74586 -18.99165 -17.42946 -16.57448 -16.23705 -15.85507 -15.72539 -15.55442 -14.78806 -14.28962 -14.13272 -13.54107 -13.42073 -12.96249 -12.85344 -12.64890 -12.39835 -12.34910 -12.04532 -11.95287 -11.69770 -11.49828 -11.36342 -11.25648 -10.96116 -10.75102 -10.69858 -10.42080 -10.31862 -10.27046 -10.02845 -9.93781 -9.70211 -9.62609 -9.57618 -9.33664 -8.62451 -6.13144 -4.14165 2.59137 3.21222 3.27653 3.35055 3.39562 4.36278 4.38476 4.47035 4.52363 4.66528 4.71534 4.78423 4.79598 4.95475 5.07478 5.20347 5.20685 5.30626 5.44636 5.50004 5.59556 5.62030 5.63162 5.66641 5.76363 5.77325 5.81316 5.84567 5.89181 5.94336 5.98833 5.99845 6.01932 6.04833 6.21432 6.34734 6.47000 6.53345 6.58126 6.91288 7.21935 7.26041 7.62949 8.23358 8.39796 8.88630 9.46637 10.99499 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.003670 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.194600 B = 7627.896751 C = 8206.955423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.084 3.916 11 O -0.365 6.365 12 C 0.457 3.543 13 O -0.509 6.509 14 C -0.112 4.112 15 C -0.052 4.052 16 C -0.108 4.108 17 C -0.143 4.143 18 C -0.144 4.144 19 C -0.131 4.131 20 C -0.108 4.108 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.143 4.143 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.023 0.977 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.389 -13.112 -0.503 25.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.011 3.989 11 O -0.281 6.281 12 C 0.301 3.699 13 O -0.398 6.398 14 C -0.149 4.149 15 C -0.071 4.071 16 C -0.126 4.126 17 C -0.180 4.180 18 C -0.181 4.181 19 C -0.168 4.168 20 C -0.126 4.126 21 C -0.171 4.171 22 C -0.180 4.180 23 C -0.181 4.181 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.981 -13.266 -0.501 24.828 hybrid contribution 0.151 0.891 -0.023 0.904 sum 21.132 -12.375 -0.525 24.494 Atomic orbital electron populations 1.69902 1.06287 1.27188 1.50171 1.24942 0.94764 0.99183 0.94133 0.86748 0.80429 0.83280 0.78743 1.20055 1.21167 1.18768 1.20855 0.88343 0.95007 1.52313 0.90696 1.19617 0.96971 0.90333 0.97789 1.23318 0.72613 1.01385 1.01594 1.86491 1.26099 1.32669 1.82885 1.23550 0.91856 0.81921 0.72604 1.90544 1.67497 1.36232 1.45533 1.21436 0.89089 0.99247 1.05161 1.21012 0.99170 0.91771 0.95128 1.22783 1.01071 0.95144 0.93610 1.23039 0.99774 0.96660 0.98525 1.22825 1.01368 0.96765 0.97172 1.22884 1.01124 0.96925 0.95911 1.22825 1.01924 0.95692 0.92160 1.22989 0.99961 0.98122 0.96011 1.22810 1.01549 0.97093 0.96536 1.22974 1.01465 0.96524 0.97117 0.92447 0.95468 0.95889 0.91872 0.91845 0.88106 0.88205 0.90355 0.87450 0.90432 0.91789 0.90462 0.91942 0.91787 0.90354 0.86891 0.90650 0.91755 0.90422 0.91921 0.91728 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -15.07 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.24 4.42 -27.88 -0.12 -0.36 16 10 C 0.08 1.79 5.40 37.16 0.20 1.99 16 11 O -0.36 -6.84 10.22 -39.25 -0.40 -7.25 16 12 C 0.46 7.27 7.33 36.00 0.26 7.53 16 13 O -0.51 -8.96 11.42 -18.75 -0.21 -9.17 16 14 C -0.11 -1.25 5.29 -27.88 -0.15 -1.40 16 15 C -0.05 -0.53 1.69 -90.62 -0.15 -0.68 16 16 C -0.11 -1.15 2.75 -89.81 -0.25 -1.40 16 17 C -0.14 -1.32 7.59 -25.83 -0.20 -1.51 16 18 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 19 C -0.13 -1.23 6.41 -25.92 -0.17 -1.39 16 20 C -0.11 -1.18 2.20 -89.81 -0.20 -1.38 16 21 C -0.13 -1.22 5.85 -25.82 -0.15 -1.37 16 22 C -0.14 -1.33 8.09 -25.83 -0.21 -1.54 16 23 C -0.14 -1.47 6.72 -25.92 -0.17 -1.65 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 27 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 28 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 29 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.10 0.98 7.55 -51.93 -0.39 0.59 16 31 H 0.08 0.66 7.75 -51.93 -0.40 0.26 16 32 H 0.11 1.47 5.96 -51.93 -0.31 1.16 16 33 H 0.08 0.62 7.99 -51.93 -0.41 0.21 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.66 7.07 -51.93 -0.37 0.29 16 39 H 0.11 1.59 6.03 -51.93 -0.31 1.27 16 40 H 0.07 0.61 7.74 -51.93 -0.40 0.20 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 LS Contribution 349.50 15.07 5.27 5.27 Total: -1.00 -30.36 349.50 -9.20 -39.57 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.02 Total: -0.49 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.94 Total: -18.06 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.62 Total: -16.42 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.36 -9.20 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859823528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.264 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds