Wall clock time and date at job start Tue Mar 31 2020 02:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 5 5 C 1.50699 * 109.47240 * 60.00091 * 4 2 1 6 6 H 1.08003 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00305 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00241 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47164 * 89.99694 * 9 7 5 11 11 H 1.48496 * 109.47236 * 210.00271 * 9 7 5 12 12 H 1.48507 * 109.46844 * 329.99606 * 9 7 5 13 13 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 14 14 O 1.45206 * 109.46777 * 299.99939 * 13 2 1 15 15 C 1.34224 * 117.00077 * 179.97438 * 14 13 2 16 16 O 1.20833 * 120.00103 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00302 * 180.02562 * 15 14 13 18 18 C 1.52307 * 115.91175 * 248.28915 * 17 15 14 19 19 C 1.52070 * 115.93285 * 180.02562 * 17 15 14 20 20 H 1.09004 * 117.25362 * 359.35672 * 19 17 15 21 21 C 1.52717 * 120.52303 * 210.73852 * 19 17 15 22 22 C 1.52878 * 110.15059 * 21.46308 * 21 19 17 23 23 C 1.53299 * 108.58608 * 305.48242 * 22 21 19 24 24 C 1.52074 * 114.63733 * 33.37592 * 17 15 14 25 25 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 26 26 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 27 27 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 30 30 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 31 31 H 1.09000 * 109.46866 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47261 * 299.99767 * 4 2 1 33 33 H 0.96992 * 120.00516 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47486 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47362 * 59.99268 * 13 2 1 36 36 H 1.08997 * 117.53972 * 0.84262 * 18 17 15 37 37 H 1.09004 * 117.53757 * 146.09515 * 18 17 15 38 38 H 1.08993 * 109.35918 * 141.67214 * 21 19 17 39 39 H 1.09002 * 109.35450 * 261.25751 * 21 19 17 40 40 H 1.09004 * 109.61608 * 65.20799 * 22 21 19 41 41 H 1.08994 * 109.61741 * 185.75191 * 22 21 19 42 42 H 1.08999 * 109.62101 * 194.17570 * 23 22 21 43 43 H 1.09004 * 109.61560 * 314.53100 * 23 22 21 44 44 H 1.08997 * 109.26881 * 285.89717 * 24 17 15 45 45 H 1.09000 * 109.26597 * 45.37074 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9171 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4332 0.1387 -4.8058 9 14 2.9451 -2.0004 -3.9035 10 1 2.0865 -3.2110 -3.9495 11 1 3.7375 -1.9075 -5.1559 12 1 3.8651 -2.0898 -2.7412 13 6 2.0400 -0.7213 1.2492 14 8 1.5560 -0.0368 2.4348 15 6 1.9162 -0.5472 3.6228 16 8 2.6125 -1.5335 3.6706 17 6 1.4513 0.1092 4.8971 18 6 2.5324 0.7841 5.7310 19 6 1.9140 -0.5451 6.1895 20 1 2.5328 -1.4383 6.1030 21 6 1.0460 -0.4830 7.4444 22 6 -0.4095 -0.2093 7.0650 23 6 -0.4605 1.0608 6.2082 24 6 0.0714 0.7435 4.8167 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7216 -1.2491 32 1 1.6767 -1.7489 -1.2494 33 1 1.6675 -0.1926 -5.6868 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 3.5528 0.7595 5.3485 37 1 2.2567 1.6842 6.2805 38 1 1.1085 -1.4334 7.9744 39 1 1.4062 0.3149 8.0937 40 1 -0.8037 -1.0510 6.4955 41 1 -1.0023 -0.0655 7.9683 42 1 -1.4893 1.4137 6.1377 43 1 0.1610 1.8332 6.6614 44 1 0.1325 1.6654 4.2384 45 1 -0.6130 0.0541 4.3224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870341593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:16 Heat of formation + Delta-G solvation = -110.411954 kcal Electronic energy + Delta-G solvation = -22682.685820 eV Core-core repulsion = 19471.082611 eV Total energy + Delta-G solvation = -3211.603209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.09535 -40.19006 -38.61843 -36.95518 -34.42991 -34.07224 -31.95546 -29.97279 -28.21272 -28.02008 -26.04654 -25.21905 -24.18408 -22.42543 -21.84140 -19.96948 -19.41654 -18.93087 -18.60311 -17.76211 -17.45744 -16.26838 -15.84398 -15.51487 -15.32719 -15.06090 -14.89760 -14.84089 -14.34014 -14.28211 -14.12880 -14.07478 -13.43946 -13.10699 -12.97400 -12.96133 -12.84584 -12.71863 -12.32138 -12.17506 -11.95834 -11.89260 -11.84239 -11.74049 -11.63039 -11.41342 -11.35930 -11.14469 -10.98725 -10.82956 -10.73565 -10.72665 -8.24904 -6.26066 1.01705 1.34061 1.36315 1.46328 1.57882 2.36504 2.64110 3.09706 3.42503 3.58402 3.64228 3.78501 3.85645 3.87885 4.08757 4.13269 4.22323 4.33599 4.43522 4.52150 4.52902 4.59395 4.63651 4.71909 4.75173 4.92883 4.96059 4.98379 5.04981 5.06962 5.08082 5.22186 5.25179 5.28269 5.31388 5.33589 5.36299 5.39447 5.44286 5.50013 5.52743 5.60015 5.71907 6.34490 6.67141 6.80461 7.36394 8.90757 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.003573 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.816631 B = 7834.890531 C = 8180.687242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 C -0.120 4.120 4 C -0.002 4.002 5 C -0.505 4.505 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.252 1.252 13 C 0.084 3.916 14 O -0.340 6.340 15 C 0.484 3.516 16 O -0.545 6.545 17 C -0.132 4.132 18 C -0.139 4.139 19 C -0.113 4.113 20 H 0.097 0.903 21 C -0.085 4.085 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.077 4.077 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 1.675 27.336 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.048 4.048 3 C -0.177 4.177 4 C -0.040 4.040 5 C -0.543 4.543 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.176 1.176 13 C 0.011 3.989 14 O -0.255 6.255 15 C 0.329 3.671 16 O -0.436 6.436 17 C -0.133 4.133 18 C -0.175 4.175 19 C -0.131 4.131 20 H 0.116 0.884 21 C -0.122 4.122 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.114 4.114 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.156 0.844 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.633 1.382 27.116 27.200 hybrid contribution 0.717 -1.037 -1.388 1.875 sum -0.916 0.345 25.728 25.746 Atomic orbital electron populations 1.21643 0.93766 1.01105 1.01258 1.20447 0.96945 0.96371 0.91010 1.21638 0.99961 0.94888 1.01242 1.19567 0.96087 0.95553 0.92763 1.21288 1.30588 1.12442 0.89959 0.93007 1.25822 0.97364 0.99952 0.95735 1.70032 1.47949 1.42604 0.98477 0.85886 0.79836 0.80280 0.78033 1.19524 1.21166 1.17631 1.23182 0.98589 0.95541 0.81621 1.86480 1.69209 1.55258 1.14570 1.23441 0.76229 0.81559 0.85838 1.90620 1.37673 1.27021 1.88326 1.20759 0.99632 1.06620 0.86272 1.23439 0.95799 0.97956 1.00334 1.22458 1.01214 0.97021 0.92457 0.88437 1.21156 0.94041 1.03497 0.93550 1.21607 0.96207 0.97705 1.00442 1.21526 1.02117 0.98224 0.93452 1.20695 0.90697 1.00545 0.99487 0.91647 0.93431 0.93638 0.93647 0.93426 0.91674 0.96451 0.96608 0.92699 0.91892 0.91896 0.89055 0.84385 0.90614 0.89129 0.92929 0.89652 0.90103 0.90253 0.90347 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.08 71.98 0.58 -3.93 16 2 C -0.05 -1.86 0.61 -52.18 -0.03 -1.89 16 3 C -0.12 -4.50 8.08 71.98 0.58 -3.92 16 4 C 0.00 -0.11 3.11 29.85 0.09 -0.01 16 5 C -0.50 -28.06 8.20 25.60 0.21 -27.85 16 6 H 0.05 3.11 5.92 -2.91 -0.02 3.10 16 7 C 0.01 0.45 5.47 84.65 0.46 0.92 16 8 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 9 Si 0.93 44.61 27.47 68.60 1.88 46.50 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 13 C 0.08 2.98 4.32 71.98 0.31 3.29 16 14 O -0.34 -10.80 8.52 -51.35 -0.44 -11.24 16 15 C 0.48 14.60 7.38 71.23 0.53 15.12 16 16 O -0.55 -19.51 15.82 21.94 0.35 -19.17 16 17 C -0.13 -2.81 2.51 -53.77 -0.13 -2.94 16 18 C -0.14 -2.28 9.27 30.57 0.28 -2.00 16 19 C -0.11 -2.03 5.65 -10.99 -0.06 -2.09 16 20 H 0.10 2.14 7.50 -2.38 -0.02 2.12 16 21 C -0.09 -0.99 5.83 30.46 0.18 -0.81 16 22 C -0.12 -1.38 5.93 30.65 0.18 -1.20 16 23 C -0.12 -1.35 5.67 30.47 0.17 -1.17 16 24 C -0.08 -1.36 5.17 30.06 0.16 -1.20 16 25 H 0.06 2.12 7.68 -2.39 -0.02 2.10 16 26 H 0.05 1.99 6.62 -2.39 -0.02 1.98 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 2.00 6.62 -2.39 -0.02 1.98 16 30 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 31 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 32 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 33 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 35 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.14 1.49 7.27 -2.38 -0.02 1.47 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.73 8.06 -2.39 -0.02 0.71 16 40 H 0.05 0.75 8.06 -2.38 -0.02 0.73 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.72 7.12 -2.38 -0.02 0.70 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -66.75 348.81 6.49 -60.27 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.89 Total: 12.01 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 3.51 Total: -29.68 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.30 Total: -58.68 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.09 Total: -30.41 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Total: -66.75 6.49 -60.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870341593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.147 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds