Wall clock time and date at job start Tue Mar 31 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46508 * 109.47370 * 2 1 4 4 C 1.36838 * 119.99919 * 261.80347 * 3 2 1 5 5 H 1.07995 * 120.00037 * 195.86545 * 4 3 2 6 6 C 1.39054 * 120.00062 * 15.86811 * 4 3 2 7 7 N 1.31366 * 120.00060 * 12.15495 * 6 4 3 8 8 Si 1.86795 * 119.99998 * 192.15214 * 6 4 3 9 9 H 1.48502 * 109.47466 * 90.00208 * 8 6 4 10 10 H 1.48503 * 109.47190 * 209.99946 * 8 6 4 11 11 H 1.48498 * 109.47396 * 329.99846 * 8 6 4 12 12 C 1.34775 * 119.99897 * 81.80214 * 3 2 1 13 13 O 1.21674 * 119.99611 * 181.26592 * 12 3 2 14 14 C 1.47018 * 120.00056 * 1.26014 * 12 3 2 15 15 C 1.38519 * 126.89820 * 351.11354 * 14 12 3 16 16 C 1.39647 * 105.35192 * 180.02562 * 15 14 12 17 17 N 1.30877 * 107.87901 * 0.26377 * 16 15 14 18 18 N 1.28446 * 110.94843 * 359.54918 * 17 16 15 19 19 C 1.46495 * 125.19332 * 180.14306 * 18 17 16 20 20 C 1.52992 * 109.47558 * 274.89300 * 19 18 17 21 21 N 1.46902 * 109.47278 * 184.45114 * 20 19 18 22 22 C 1.46901 * 111.00164 * 72.50418 * 21 20 19 23 23 C 1.46902 * 111.00027 * 196.45625 * 21 20 19 24 24 H 1.08995 * 109.47514 * 65.61428 * 1 2 3 25 25 H 1.09001 * 109.47562 * 185.61617 * 1 2 3 26 26 H 1.09003 * 109.47208 * 305.61515 * 1 2 3 27 27 H 1.09000 * 109.47419 * 239.99980 * 2 1 3 28 28 H 1.08999 * 109.47327 * 119.99969 * 2 1 3 29 29 H 0.96999 * 119.99975 * 180.02562 * 7 6 4 30 30 H 1.07998 * 127.32507 * 0.02562 * 15 14 12 31 31 H 1.07995 * 126.05518 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.46946 * 34.89622 * 19 18 17 33 33 H 1.09005 * 109.47098 * 154.88766 * 19 18 17 34 34 H 1.09008 * 109.47425 * 304.44925 * 20 19 18 35 35 H 1.09003 * 109.47398 * 64.45183 * 20 19 18 36 36 H 1.08998 * 109.47404 * 64.64264 * 22 21 20 37 37 H 1.08997 * 109.47445 * 184.64862 * 22 21 20 38 38 H 1.09008 * 109.46430 * 304.64618 * 22 21 20 39 39 H 1.09000 * 109.47358 * 59.99930 * 23 21 20 40 40 H 1.09006 * 109.46980 * 180.02562 * 23 21 20 41 41 H 1.09001 * 109.46932 * 299.99855 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4057 1.9700 -1.1730 5 1 2.9964 2.8738 -1.1542 6 6 2.0387 1.4044 -2.3891 7 7 1.1318 0.4547 -2.4248 8 14 2.8352 1.9953 -3.9721 9 1 4.0506 1.1873 -4.2463 10 1 1.8760 1.8432 -5.0956 11 1 3.2120 3.4249 -3.8331 12 6 2.0861 2.0721 1.1553 13 8 2.4699 3.2267 1.1520 14 6 1.6961 1.4305 2.4193 15 6 1.0833 0.1976 2.5718 16 6 0.9198 0.0339 3.9490 17 7 1.3989 1.0989 4.5399 18 7 1.8647 1.9311 3.6796 19 6 2.4767 3.2229 4.0000 20 6 1.3834 4.2833 4.1449 21 7 2.0019 5.5982 4.3605 22 6 2.6211 6.0977 3.1256 23 6 1.0239 6.5604 4.8855 24 1 -0.3634 0.4243 -0.9359 25 1 -0.3634 -1.0227 0.1006 26 1 -0.3634 0.5985 0.8355 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8760 0.0600 -3.2732 30 1 0.7937 -0.4907 1.7916 31 1 0.4733 -0.8185 4.4392 32 1 3.0296 3.1409 4.9358 33 1 3.1582 3.5107 3.1994 34 1 0.7804 4.3100 3.2372 35 1 0.7483 4.0366 4.9958 36 1 1.8488 6.2704 2.3760 37 1 3.1420 7.0324 3.3326 38 1 3.3319 5.3606 2.7517 39 1 0.6321 6.1983 5.8361 40 1 1.5080 7.5254 5.0355 41 1 0.2056 6.6715 4.1740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900361215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:42 Heat of formation + Delta-G solvation = 92.165208 kcal Electronic energy + Delta-G solvation = -23124.539547 eV Core-core repulsion = 19850.473150 eV Total energy + Delta-G solvation = -3274.066397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92128 -38.38691 -37.49154 -35.37036 -33.13308 -32.15301 -30.37595 -29.25207 -28.57990 -27.43335 -25.33734 -24.31664 -22.54908 -21.61375 -21.31002 -20.85237 -18.84342 -17.11547 -16.39931 -15.87364 -15.63090 -15.37954 -14.89297 -14.62217 -14.29790 -14.15117 -13.63591 -13.55245 -13.46286 -13.08512 -12.28763 -12.17989 -12.00672 -11.81909 -11.71020 -11.55005 -11.39168 -11.32798 -11.17294 -10.88312 -10.68973 -10.46215 -10.27856 -10.15089 -9.82326 -9.04038 -8.64113 -8.58062 -8.33166 -8.22120 -7.80741 -6.42387 -3.96430 2.07798 2.94988 3.09435 3.17754 3.22363 3.23049 3.98673 4.13282 4.24941 4.75407 4.94258 5.05143 5.16045 5.22534 5.39831 5.47044 5.51575 5.61153 5.71825 5.79844 5.81306 5.82987 6.03683 6.12323 6.16805 6.23795 6.30610 6.39728 6.56883 6.62446 6.77010 6.99078 7.06292 7.13581 7.25799 7.37359 7.41081 7.70406 7.95150 8.37037 8.68083 9.02664 9.26398 9.83887 10.51751 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.006041 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.150240 B = 4633.549488 C = 5923.431493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 N -0.409 5.409 4 C -0.295 4.295 5 H 0.106 0.894 6 C 0.028 3.972 7 N -0.865 5.865 8 Si 0.932 3.068 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.494 3.506 13 O -0.598 6.598 14 C 0.007 3.993 15 C -0.237 4.237 16 C -0.014 4.014 17 N -0.304 5.304 18 N -0.270 5.270 19 C 0.128 3.872 20 C 0.049 3.951 21 N -0.544 5.544 22 C 0.022 3.978 23 C 0.027 3.973 24 H 0.093 0.907 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.109 0.891 28 H 0.055 0.945 29 H 0.270 0.730 30 H 0.185 0.815 31 H 0.176 0.824 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 1.784 8.086 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.124 5.124 4 C -0.423 4.423 5 H 0.123 0.877 6 C -0.175 4.175 7 N -0.505 5.505 8 Si 0.759 3.241 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.282 3.718 13 O -0.486 6.486 14 C -0.121 4.121 15 C -0.266 4.266 16 C -0.191 4.191 17 N -0.135 5.135 18 N -0.057 5.057 19 C 0.007 3.993 20 C -0.080 4.080 21 N -0.268 5.268 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.111 0.889 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.126 0.874 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.202 0.798 31 H 0.193 0.807 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.136 2.792 9.334 9.744 hybrid contribution -0.686 -0.228 -2.130 2.250 sum -0.823 2.564 7.204 7.691 Atomic orbital electron populations 1.22287 0.96409 0.99531 1.03284 1.22131 0.94748 0.83567 1.02139 1.43479 1.52526 1.11131 1.05291 1.19815 1.30113 1.10644 0.81770 0.87674 1.25381 0.95717 0.96775 0.99642 1.70007 1.27690 1.25978 1.26788 0.85819 0.78709 0.79412 0.80179 1.20204 1.20809 1.19341 1.16647 0.86893 0.85945 0.82312 1.90566 1.54560 1.17067 1.86361 1.21946 1.06100 0.96130 0.87919 1.23438 1.07311 0.98135 0.97674 1.23477 1.05053 0.97634 0.92922 1.73029 1.16279 1.02250 1.21959 1.45522 1.42542 1.15073 1.02609 1.21916 0.95641 0.77538 1.04164 1.22297 0.95776 0.88663 1.01268 1.61886 1.32251 1.02376 1.30320 1.22472 0.99578 1.00806 0.89729 1.22366 0.94209 0.96068 0.99538 0.88879 0.94068 0.94574 0.87351 0.92767 0.91976 0.79833 0.80698 0.88908 0.86285 0.93368 0.90732 0.95051 0.91790 0.90085 0.91522 0.91279 0.95629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.09 37.15 0.30 -2.90 16 2 C 0.10 2.11 4.79 -4.04 -0.02 2.09 16 3 N -0.41 -10.16 2.64 -116.18 -0.31 -10.47 16 4 C -0.30 -7.76 9.41 -15.02 -0.14 -7.91 16 5 H 0.11 2.89 7.31 -52.49 -0.38 2.51 16 6 C 0.03 0.70 5.13 -17.45 -0.09 0.61 16 7 N -0.87 -20.94 8.13 55.50 0.45 -20.49 16 8 Si 0.93 19.55 29.57 -169.99 -5.03 14.53 16 9 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 12 C 0.49 12.11 7.48 -12.70 -0.09 12.02 16 13 O -0.60 -15.56 14.37 5.21 0.07 -15.48 16 14 C 0.01 0.16 6.68 -82.06 -0.55 -0.39 16 15 C -0.24 -4.47 7.44 -38.95 -0.29 -4.76 16 16 C -0.01 -0.23 12.03 -17.43 -0.21 -0.44 16 17 N -0.30 -5.68 11.90 30.58 0.36 -5.31 16 18 N -0.27 -5.30 3.35 -57.15 -0.19 -5.49 16 19 C 0.13 2.25 5.97 -4.05 -0.02 2.22 16 20 C 0.05 0.80 5.30 -3.83 -0.02 0.78 16 21 N -0.54 -7.86 4.97 -251.25 -1.25 -9.11 16 22 C 0.02 0.33 9.43 60.07 0.57 0.89 16 23 C 0.03 0.31 9.53 60.07 0.57 0.89 16 24 H 0.09 2.15 6.17 -51.93 -0.32 1.83 16 25 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 26 H 0.04 0.73 6.26 -51.93 -0.33 0.41 16 27 H 0.11 2.52 5.81 -51.93 -0.30 2.22 16 28 H 0.05 1.08 4.86 -51.93 -0.25 0.83 16 29 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 30 H 0.18 3.26 3.42 -52.49 -0.18 3.08 16 31 H 0.18 2.28 8.06 -52.49 -0.42 1.85 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.12 2.29 4.68 -51.93 -0.24 2.04 16 34 H 0.05 0.92 8.05 -51.92 -0.42 0.50 16 35 H 0.07 1.16 7.95 -51.93 -0.41 0.74 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.33 6.50 -51.92 -0.34 1.00 16 39 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -28.18 321.83 -6.72 -34.90 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.69 Total: 8.97 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 0.00 Total: 3.11 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.93 Total: -50.87 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.07 Total: -15.48 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.18 -6.72 -34.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900361215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.065 kcal (2) G-P(sol) polarization free energy of solvation -28.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds