Wall clock time and date at job start Tue Mar 31 2020 02:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 110.99992 * 2 1 4 4 C 1.50695 * 109.47163 * 66.04365 * 3 2 1 5 5 H 1.08001 * 119.99957 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99878 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99861 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99883 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46943 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46731 * 120.00057 * 8 6 4 11 11 H 1.48497 * 109.47020 * 239.99773 * 8 6 4 12 12 C 1.46896 * 111.00256 * 236.04286 * 2 1 3 13 13 C 1.52997 * 109.47114 * 293.95380 * 12 2 1 14 14 H 1.09001 * 109.46832 * 59.99999 * 13 12 2 15 15 O 1.42895 * 109.47503 * 299.99765 * 13 12 2 16 16 C 1.53006 * 109.47127 * 179.97438 * 13 12 2 17 17 N 1.46895 * 109.47221 * 185.00300 * 16 13 12 18 18 C 1.46896 * 111.00108 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.47209 * 179.97438 * 18 17 16 20 20 N 1.31797 * 119.12279 * 269.73064 * 19 18 17 21 21 C 1.32338 * 120.81947 * 179.76289 * 20 19 18 22 22 C 1.38601 * 119.10060 * 0.50246 * 21 20 19 23 23 C 1.38592 * 118.39827 * 359.74809 * 22 21 20 24 24 N 1.31789 * 119.12546 * 90.00323 * 19 18 17 25 25 H 1.08999 * 109.47174 * 183.95746 * 1 2 3 26 26 H 1.08998 * 109.47389 * 303.95602 * 1 2 3 27 27 H 1.09008 * 109.47155 * 63.95597 * 1 2 3 28 28 H 1.08999 * 109.46856 * 186.04735 * 3 2 1 29 29 H 1.09001 * 109.46406 * 306.04373 * 3 2 1 30 30 H 0.97000 * 119.99813 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47267 * 173.95091 * 12 2 1 32 32 H 1.09004 * 109.47041 * 53.95496 * 12 2 1 33 33 H 0.96696 * 113.99976 * 300.00825 * 15 13 12 34 34 H 1.08997 * 109.47395 * 305.00572 * 16 13 12 35 35 H 1.09004 * 109.46579 * 64.99848 * 16 13 12 36 36 H 1.00901 * 111.00249 * 56.04393 * 17 16 13 37 37 H 1.09001 * 109.47414 * 300.00100 * 18 17 16 38 38 H 1.09003 * 109.46964 * 59.99930 * 18 17 16 39 39 H 1.08000 * 120.44714 * 180.23220 * 21 20 19 40 40 H 1.07996 * 120.79831 * 179.77739 * 22 21 20 41 41 H 1.08001 * 120.44922 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7110 4.0022 0.6144 8 14 1.5816 4.1874 3.1376 9 1 0.8135 3.2451 3.9903 10 1 2.8231 4.5950 3.8432 11 1 0.7541 5.3884 2.8580 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7391 0.2427 16 6 2.1793 -3.0404 -2.1553 17 7 1.7288 -4.4351 -2.0569 18 6 2.2374 -5.2331 -3.1804 19 6 1.7563 -6.6548 -3.0452 20 7 2.4948 -7.5215 -2.3815 21 6 2.1024 -8.7772 -2.2382 22 6 0.9031 -9.1776 -2.8060 23 6 0.1568 -8.2389 -3.5007 24 7 0.6109 -6.9998 -3.5983 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3634 0.5740 0.8524 27 1 -0.3634 0.4512 -0.9234 28 1 3.0797 1.3444 -0.1083 29 1 1.5610 1.9273 -0.8310 30 1 2.9856 4.9183 0.7764 31 1 3.0797 -0.6611 -1.1755 32 1 1.5611 -0.3873 -2.0628 33 1 3.1652 -2.6770 0.2789 34 1 1.8145 -2.6055 -3.0858 35 1 3.2688 -3.0086 -2.1421 36 1 0.7227 -4.4871 -2.0022 37 1 1.8733 -4.8136 -4.1183 38 1 3.3273 -5.2166 -3.1739 39 1 2.7105 -9.4815 -1.6900 40 1 0.5583 -10.1965 -2.7091 41 1 -0.7829 -8.5148 -3.9559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118998946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:02 Heat of formation + Delta-G solvation = 9.973624 kcal Electronic energy + Delta-G solvation = -20998.672011 eV Core-core repulsion = 17721.041519 eV Total energy + Delta-G solvation = -3277.630491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32012 -38.25132 -36.16918 -35.04412 -34.02579 -32.58333 -32.43793 -29.83838 -27.49763 -26.81764 -25.22598 -24.88107 -23.39444 -22.48536 -21.28465 -20.11262 -17.90270 -17.49612 -16.52243 -16.29407 -15.85692 -15.56381 -15.37475 -15.00760 -14.62550 -14.34188 -14.22754 -13.93942 -13.76111 -13.43407 -13.06634 -12.52048 -12.42568 -11.94370 -11.80855 -11.31364 -11.18969 -11.14426 -11.08192 -10.85422 -10.70440 -10.62734 -10.26073 -9.99717 -9.93540 -9.55644 -9.52039 -9.06170 -8.56318 -8.41354 -7.15852 -6.00173 -4.00798 0.50984 0.75722 3.28604 3.33556 3.40760 3.46768 3.56407 3.81700 4.14116 4.23942 4.46115 4.62280 4.72668 4.77075 4.86026 4.96895 5.10348 5.20692 5.33763 5.36263 5.40093 5.51432 5.58394 5.66552 5.72746 6.01759 6.09561 6.23535 6.33070 6.44046 6.64253 6.74374 6.80114 7.13805 7.30449 7.35830 7.78075 7.83970 8.08895 8.19680 8.25378 8.58997 9.07721 9.63368 11.10885 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.047502 B = 0.002451 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.304026 B =11422.058151 C =11491.316862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.024 3.976 13 C 0.118 3.882 14 H 0.091 0.909 15 O -0.536 6.536 16 C 0.029 3.971 17 N -0.670 5.670 18 C 0.126 3.874 19 C 0.326 3.674 20 N -0.499 5.499 21 C 0.148 3.852 22 C -0.233 4.233 23 C 0.147 3.853 24 N -0.518 5.518 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.007 0.993 28 H 0.029 0.971 29 H -0.011 1.011 30 H 0.260 0.740 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.369 0.631 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.344 0.656 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.169 0.831 40 H 0.147 0.853 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 -24.946 -10.460 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.105 4.105 13 C 0.057 3.943 14 H 0.109 0.891 15 O -0.339 6.339 16 C -0.101 4.101 17 N -0.302 5.302 18 C -0.005 4.005 19 C 0.058 3.942 20 N -0.213 5.213 21 C -0.018 4.018 22 C -0.255 4.255 23 C -0.019 4.019 24 N -0.232 5.232 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.026 0.974 28 H 0.047 0.953 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.216 0.784 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.162 0.838 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.186 0.814 40 H 0.165 0.835 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.230 -24.342 -9.590 26.258 hybrid contribution -0.800 0.404 -0.842 1.229 sum -3.030 -23.938 -10.432 26.288 Atomic orbital electron populations 1.22247 0.89042 0.99572 1.00329 1.62006 1.06804 1.17357 1.39124 1.19754 0.95293 0.81639 0.96616 1.21214 1.34524 0.96792 1.01669 0.91729 1.25002 0.95373 0.97381 0.97030 1.69969 1.38669 1.11377 1.34041 0.86435 0.78152 0.79251 0.83562 1.19612 1.21010 1.21184 1.22721 1.00607 0.93831 0.93383 1.21839 0.98134 0.90754 0.83536 0.89131 1.86587 1.24977 1.84927 1.37418 1.22770 1.01458 0.87364 0.98534 1.60319 1.16749 1.10567 1.42521 1.20630 1.01167 0.85149 0.93530 1.23081 0.86413 0.96528 0.88167 1.68293 1.34891 1.02969 1.15124 1.23322 0.93213 0.92494 0.92748 1.22939 0.98032 1.02758 1.01787 1.23234 0.98518 0.87977 0.92143 1.68261 1.14621 1.19684 1.20672 0.93495 0.90695 0.97418 0.95338 0.99339 0.93042 0.91073 0.95489 0.78435 0.94223 0.90177 0.83819 0.92523 0.88335 0.81399 0.83478 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.06 0.55 1.29 16 2 N -0.53 -11.66 4.62 -244.37 -1.13 -12.79 16 3 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 4 C -0.50 -14.44 8.46 -34.44 -0.29 -14.73 16 5 H 0.06 1.86 7.12 -52.49 -0.37 1.48 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 C 0.02 0.43 4.62 -3.83 -0.02 0.41 16 13 C 0.12 1.73 3.01 -26.73 -0.08 1.65 16 14 H 0.09 1.38 6.55 -51.93 -0.34 1.04 16 15 O -0.54 -8.87 13.15 -35.23 -0.46 -9.33 16 16 C 0.03 0.33 5.32 -3.82 -0.02 0.31 16 17 N -0.67 -7.91 6.44 -115.06 -0.74 -8.65 16 18 C 0.13 1.32 6.12 -4.98 -0.03 1.29 16 19 C 0.33 3.67 7.16 -157.20 -1.12 2.55 16 20 N -0.50 -5.58 10.33 -10.72 -0.11 -5.69 16 21 C 0.15 1.17 11.31 -17.20 -0.19 0.97 16 22 C -0.23 -1.43 10.17 -39.32 -0.40 -1.83 16 23 C 0.15 1.10 11.30 -17.21 -0.19 0.91 16 24 N -0.52 -5.45 10.33 -10.73 -0.11 -5.56 16 25 H 0.05 0.84 6.47 -51.93 -0.34 0.50 16 26 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 27 H 0.01 0.15 8.14 -51.92 -0.42 -0.28 16 28 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 29 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 32 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.37 5.16 9.05 45.56 0.41 5.57 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.34 4.12 8.72 -39.29 -0.34 3.78 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -34.22 345.79 -9.07 -43.29 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.52 Total: 3.54 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.93 Total: -0.67 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -1.36 Total: -59.03 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.46 Total: -9.33 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.22 -9.07 -43.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118998946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.264 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds