Wall clock time and date at job start Tue Mar 31 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99674 * 2 1 4 4 N 1.46903 * 109.46922 * 124.99824 * 3 2 1 5 5 C 1.46899 * 111.00254 * 66.04444 * 4 3 2 6 6 C 1.38587 * 110.99559 * 189.99685 * 4 3 2 7 7 N 1.31215 * 126.47203 * 301.18423 * 6 4 3 8 8 N 1.28532 * 109.85530 * 179.73062 * 7 6 4 9 9 C 1.30286 * 110.05431 * 0.45395 * 8 7 6 10 10 C 1.50705 * 126.34828 * 179.81807 * 9 8 7 11 11 C 1.53002 * 109.47280 * 269.69220 * 10 9 8 12 12 H 1.08993 * 109.47205 * 54.99825 * 11 10 9 13 13 O 1.42893 * 109.46833 * 294.99592 * 11 10 9 14 14 C 1.50695 * 109.46948 * 174.99648 * 11 10 9 15 15 H 1.08003 * 120.00384 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99883 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99747 * 179.97438 * 16 14 11 18 18 Si 1.86790 * 119.99924 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47266 * 89.99923 * 18 16 14 20 20 H 1.48501 * 109.47223 * 209.99660 * 18 16 14 21 21 H 1.48497 * 109.47198 * 329.99663 * 18 16 14 22 22 N 1.36451 * 126.46862 * 121.18977 * 6 4 3 23 23 C 1.46503 * 127.14108 * 359.97438 * 22 6 4 24 24 C 1.52997 * 109.47007 * 275.17452 * 23 22 6 25 25 H 1.08002 * 119.99875 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00373 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00149 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47382 * 4.99569 * 3 2 1 29 29 H 1.09004 * 109.46909 * 244.99585 * 3 2 1 30 30 H 1.08999 * 109.46860 * 178.45113 * 5 4 3 31 31 H 1.08997 * 109.46843 * 298.44586 * 5 4 3 32 32 H 1.09003 * 109.47242 * 58.44590 * 5 4 3 33 33 H 1.09004 * 109.46653 * 29.69095 * 10 9 8 34 34 H 1.08997 * 109.46928 * 149.68576 * 10 9 8 35 35 H 0.96699 * 114.00510 * 299.99896 * 13 11 10 36 36 H 0.97007 * 119.99755 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46657 * 35.17712 * 23 22 6 38 38 H 1.08997 * 109.46694 * 155.17460 * 23 22 6 39 39 H 1.09003 * 109.47490 * 59.99963 * 24 23 22 40 40 H 1.08998 * 109.46687 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47110 * 299.99782 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 4.0494 0.3205 0.9744 6 6 3.5418 2.5953 1.2990 7 7 4.2385 3.2656 0.4118 8 7 4.5829 4.4048 0.8972 9 6 4.1383 4.5239 2.1161 10 6 4.3342 5.7088 3.0265 11 6 5.6149 5.5192 3.8419 12 1 6.4531 5.3465 3.1670 13 8 5.4639 4.3953 4.7114 14 6 5.8765 6.7566 4.6612 15 1 5.1971 7.5944 4.6062 16 6 6.9827 6.8190 5.4819 17 7 7.2113 7.8991 6.1965 18 14 8.1574 5.3699 5.5775 19 1 9.2190 5.5245 4.5507 20 1 8.7768 5.3229 6.9264 21 1 7.4106 4.1101 5.3316 22 7 3.4561 3.3770 2.4142 23 6 2.7741 3.0545 3.6700 24 6 1.2920 3.4157 3.5528 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 4.7415 0.3806 1.8143 31 1 3.5988 -0.6715 0.9452 32 1 4.5891 0.5019 0.0449 33 1 4.4151 6.6167 2.4288 34 1 3.4827 5.7929 3.7016 35 1 4.7348 4.4801 5.3409 36 1 7.9897 7.9431 6.7736 37 1 2.8733 1.9884 3.8740 38 1 3.2234 3.6235 4.4839 39 1 0.8426 2.8467 2.7389 40 1 0.7845 3.1754 4.4870 41 1 1.1928 4.4818 3.3489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121849491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:05 Heat of formation + Delta-G solvation = 38.419919 kcal Electronic energy + Delta-G solvation = -22681.776691 eV Core-core repulsion = 19405.379724 eV Total energy + Delta-G solvation = -3276.396967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.02041 -39.04049 -38.32093 -36.53258 -34.53123 -34.43742 -33.01512 -31.39657 -30.04922 -28.24522 -27.51468 -25.91864 -24.79882 -23.33847 -21.79134 -21.41769 -20.56427 -19.49049 -18.12863 -17.70823 -17.07449 -16.91008 -16.59013 -16.20588 -15.98091 -15.65641 -15.22062 -14.92710 -14.69363 -14.50553 -14.06058 -13.96817 -13.69991 -13.35193 -13.17112 -13.03658 -12.88668 -12.70028 -12.56304 -12.39527 -12.21641 -12.03516 -11.97145 -11.61120 -11.18443 -11.04568 -10.85340 -10.59571 -10.42171 -9.85237 -9.82736 -8.36067 -6.50267 0.71106 1.11750 1.38330 1.44188 1.52332 1.71280 1.75249 2.41495 2.78035 3.01223 3.36793 3.69000 3.78126 3.95843 3.99387 4.09693 4.10444 4.13407 4.32117 4.37524 4.40930 4.43891 4.57063 4.62931 4.69665 4.76127 4.84526 4.86176 4.94188 5.04095 5.18424 5.20196 5.39681 5.43711 5.56859 5.59399 5.70206 5.85181 6.07233 6.22865 6.62720 7.13993 7.31502 7.68663 8.77426 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.004439 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.751156 B = 6306.641212 C = 6482.284094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.156 4.156 3 C 0.096 3.904 4 N -0.453 5.453 5 C 0.033 3.967 6 C 0.335 3.665 7 N -0.349 5.349 8 N -0.337 5.337 9 C 0.208 3.792 10 C -0.040 4.040 11 C 0.215 3.785 12 H 0.039 0.961 13 O -0.579 6.579 14 C -0.559 4.559 15 H 0.051 0.949 16 C 0.037 3.963 17 N -0.933 5.933 18 Si 0.929 3.071 19 H -0.296 1.296 20 H -0.294 1.294 21 H -0.207 1.207 22 N -0.449 5.449 23 C 0.101 3.899 24 C -0.156 4.156 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.369 0.631 36 H 0.267 0.733 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.643 -18.446 -6.613 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C -0.030 4.030 4 N -0.178 5.178 5 C -0.114 4.114 6 C -0.022 4.022 7 N -0.193 5.193 8 N -0.177 5.177 9 C -0.061 4.061 10 C -0.080 4.080 11 C 0.156 3.844 12 H 0.057 0.943 13 O -0.387 6.387 14 C -0.597 4.597 15 H 0.070 0.930 16 C -0.164 4.164 17 N -0.572 5.572 18 Si 0.755 3.245 19 H -0.223 1.223 20 H -0.221 1.221 21 H -0.129 1.129 22 N -0.141 5.141 23 C -0.020 4.020 24 C -0.214 4.214 25 H 0.139 0.861 26 H 0.113 0.887 27 H 0.146 0.854 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.218 0.782 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.632 -18.385 -7.680 24.720 hybrid contribution 0.430 0.339 0.868 1.026 sum -14.202 -18.046 -6.812 23.953 Atomic orbital electron populations 1.24036 0.95416 1.02933 0.98152 1.22717 0.96140 0.96728 1.01899 1.21264 0.93691 0.97866 0.90203 1.58975 1.17411 0.97487 1.43958 1.22539 0.92751 0.95162 1.00917 1.22573 1.00232 0.93691 0.85728 1.74401 1.15981 1.02072 1.26878 1.73929 1.22703 1.12815 1.08255 1.25080 0.95751 0.90740 0.94554 1.20694 1.00840 0.90980 0.95500 1.19401 0.92444 0.84524 0.88034 0.94326 1.86689 1.56298 1.44242 1.51474 1.21699 1.10381 1.01732 1.25873 0.93028 1.25696 0.98898 0.97840 0.93959 1.70051 1.29144 1.29903 1.28105 0.86130 0.78295 0.83935 0.76159 1.22285 1.22095 1.12868 1.46497 1.40037 1.13230 1.14295 1.22187 0.93649 1.04126 0.82008 1.22073 0.93196 1.01700 1.04432 0.86133 0.88696 0.85419 0.91302 0.93227 0.92125 0.86632 0.94703 0.88743 0.87881 0.78162 0.92369 0.87442 0.87717 0.92294 0.87646 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 14.32 67.78 0.97 -0.98 16 2 C -0.16 -2.19 9.18 25.65 0.24 -1.96 16 3 C 0.10 1.96 5.30 85.56 0.45 2.41 16 4 N -0.45 -10.63 4.77 -735.29 -3.51 -14.14 16 5 C 0.03 0.68 9.28 127.69 1.19 1.86 16 6 C 0.34 10.57 6.40 260.11 1.66 12.24 16 7 N -0.35 -13.55 12.17 -58.00 -0.71 -14.26 16 8 N -0.34 -14.22 12.18 -49.54 -0.60 -14.83 16 9 C 0.21 7.69 7.09 137.64 0.98 8.67 16 10 C -0.04 -1.48 5.00 29.85 0.15 -1.33 16 11 C 0.21 9.48 2.30 29.85 0.07 9.55 16 12 H 0.04 1.92 7.57 -2.39 -0.02 1.90 16 13 O -0.58 -22.97 9.15 -148.98 -1.36 -24.33 16 14 C -0.56 -29.65 9.34 25.60 0.24 -29.41 16 15 H 0.05 2.95 7.99 -2.91 -0.02 2.92 16 16 C 0.04 2.06 5.47 84.66 0.46 2.52 16 17 N -0.93 -56.20 13.96 21.45 0.30 -55.90 16 18 Si 0.93 44.63 26.99 68.60 1.85 46.48 16 19 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.21 -9.40 5.31 99.48 0.53 -8.88 16 22 N -0.45 -13.72 2.81 -514.85 -1.45 -15.16 16 23 C 0.10 2.22 6.68 86.38 0.58 2.79 16 24 C -0.16 -2.69 10.24 71.98 0.74 -1.96 16 25 H 0.12 0.96 8.06 -2.91 -0.02 0.93 16 26 H 0.09 1.14 7.84 -2.91 -0.02 1.11 16 27 H 0.13 1.39 6.98 -2.91 -0.02 1.37 16 28 H 0.07 1.51 7.71 -2.39 -0.02 1.49 16 29 H 0.05 1.13 8.11 -2.39 -0.02 1.11 16 30 H 0.06 1.36 8.11 -2.39 -0.02 1.34 16 31 H 0.12 1.53 6.70 -2.39 -0.02 1.51 16 32 H 0.03 0.79 8.13 -2.39 -0.02 0.77 16 33 H 0.09 3.63 8.14 -2.38 -0.02 3.61 16 34 H 0.10 3.22 7.78 -2.39 -0.02 3.20 16 35 H 0.37 11.95 7.68 -74.06 -0.57 11.38 16 36 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 37 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.10 2.24 5.37 -2.39 -0.01 2.23 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -71.59 339.19 2.52 -69.07 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.27 Total: 18.65 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 7.72 Total: 4.41 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -5.96 Total: -114.29 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.36 Total: -24.33 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.85 Total: 46.48 kcal Total: -71.59 2.52 -69.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121849491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.494 kcal (2) G-P(sol) polarization free energy of solvation -71.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds