Wall clock time and date at job start Tue Mar 31 2020 02:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48503 * 109.47283 * 270.00067 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99791 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.52995 * 112.85050 * 180.02562 * 16 14 13 18 18 C 1.53780 * 113.61729 * 48.80039 * 17 16 14 19 19 C 1.53951 * 87.02346 * 220.05268 * 18 17 16 20 20 C 1.53781 * 87.11012 * 25.36172 * 19 18 17 21 21 C 1.53781 * 113.61269 * 48.80500 * 16 14 13 22 22 C 1.53963 * 87.01707 * 220.04849 * 21 16 14 23 23 C 1.53777 * 87.11168 * 25.36258 * 22 21 16 24 24 H 0.97005 * 119.99630 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 27 27 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 28 28 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 29 29 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 32 32 H 0.97000 * 120.00420 * 0.02562 * 13 12 11 33 33 H 1.09000 * 112.85106 * 180.02562 * 17 16 14 34 34 H 1.09005 * 113.61436 * 334.57015 * 18 17 16 35 35 H 1.09001 * 113.61517 * 105.46976 * 18 17 16 36 36 H 1.09005 * 113.53537 * 270.80944 * 19 18 17 37 37 H 1.09001 * 113.74234 * 139.94697 * 19 18 17 38 38 H 1.09004 * 113.61384 * 220.08915 * 20 19 18 39 39 H 1.08999 * 113.68812 * 89.20541 * 20 19 18 40 40 H 1.08999 * 113.61762 * 334.56592 * 21 16 14 41 41 H 1.09002 * 113.61117 * 105.47550 * 21 16 14 42 42 H 1.09004 * 113.53445 * 270.81187 * 22 21 16 43 43 H 1.08999 * 113.74059 * 139.94814 * 22 21 16 44 44 H 1.08996 * 113.61597 * 220.08742 * 23 22 21 45 45 H 1.09000 * 113.61424 * 89.18559 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1448 0.0005 13 7 0.8766 -7.2582 0.0005 14 6 1.3258 -8.5289 0.0005 15 8 2.5182 -8.7506 0.0001 16 6 0.3464 -9.6744 0.0000 17 6 1.0319 -11.0421 0.0007 18 6 2.1369 -11.1770 1.0617 19 6 2.9512 -11.9397 0.0009 20 6 2.1384 -11.1772 -1.0588 21 6 -0.7588 -9.5393 -1.0608 22 6 -1.7323 -10.0842 0.0003 23 6 -0.7597 -9.5396 1.0597 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 0.0005 26 1 2.6846 -3.7145 0.8905 27 1 2.6846 -3.7146 -0.8894 28 1 0.4367 -4.7621 -0.8886 29 1 0.4373 -4.7618 0.8913 30 1 2.4547 -6.2024 -0.8899 31 1 2.4558 -6.2026 0.8901 32 1 -0.0771 -7.0810 0.0005 33 1 0.3236 -11.8706 -0.0002 34 1 2.5816 -10.2251 1.3523 35 1 1.8492 -11.7894 1.9163 36 1 2.7684 -13.0143 0.0015 37 1 4.0124 -11.6909 -0.0003 38 1 1.8521 -11.7898 -1.9136 39 1 2.5826 -10.2254 -1.3500 40 1 -0.9617 -8.5085 -1.3511 41 1 -0.6270 -10.2028 -1.9155 42 1 -1.8131 -11.1712 -0.0005 43 1 -2.7025 -9.5875 0.0019 44 1 -0.6288 -10.2033 1.9144 45 1 -0.9629 -8.5089 1.3502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163456579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:28 Heat of formation + Delta-G solvation = 5.498213 kcal Electronic energy + Delta-G solvation = -22062.661536 eV Core-core repulsion = 18888.377320 eV Total energy + Delta-G solvation = -3174.284216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36229 -38.21007 -37.37748 -35.89311 -34.24129 -31.92834 -29.65398 -27.87574 -26.45535 -25.54859 -25.15694 -23.94319 -22.46929 -21.31836 -20.89224 -19.92150 -18.99625 -17.17542 -16.78297 -16.26947 -15.66819 -15.43071 -15.42628 -14.62199 -14.51753 -14.24040 -13.90528 -13.29423 -13.28338 -13.05009 -12.66535 -12.64642 -12.61831 -12.02796 -11.83576 -11.65349 -11.54369 -11.33077 -10.95403 -10.92189 -10.79340 -10.78268 -10.62206 -10.61035 -10.13189 -10.09486 -10.06260 -9.73429 -9.28949 -8.99146 -8.88831 -6.94596 -5.78269 -3.07181 2.54602 3.15216 3.43411 3.48513 3.50295 4.17657 4.19950 4.27733 4.43795 4.58355 4.68824 4.81413 4.82191 4.89018 5.04478 5.15311 5.25070 5.30260 5.35970 5.37740 5.56656 5.58820 5.61193 5.62566 5.65326 5.67450 5.75397 5.84208 5.91065 5.99852 6.03819 6.05588 6.09153 6.18220 6.24376 6.30862 6.45950 6.62081 6.77717 6.82028 7.50381 7.69275 8.23780 8.40788 9.51885 10.08907 10.43595 11.44796 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032901 B = 0.002782 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.836732 B =10060.821784 C =10633.186530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.123 3.877 13 N -0.726 5.726 14 C 0.525 3.475 15 O -0.533 6.533 16 C -0.093 4.093 17 C -0.077 4.077 18 C -0.136 4.136 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.126 4.126 24 H 0.255 0.745 25 H 0.383 0.617 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.398 0.602 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 -25.566 0.024 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.378 5.378 14 C 0.311 3.689 15 O -0.411 6.411 16 C -0.097 4.097 17 C -0.096 4.096 18 C -0.173 4.173 19 C -0.175 4.175 20 C -0.173 4.173 21 C -0.164 4.164 22 C -0.175 4.175 23 C -0.164 4.164 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.233 0.767 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.801 -25.579 0.033 25.642 hybrid contribution -0.391 1.093 -0.013 1.161 sum -2.191 -24.486 0.020 24.584 Atomic orbital electron populations 1.69662 1.05144 1.25689 1.57861 1.24755 0.95563 0.97768 1.02993 0.86163 0.78663 0.83674 0.77549 1.21677 1.21737 1.20705 1.19248 0.91107 0.84123 1.42632 0.91097 1.42341 1.05862 1.00000 1.89613 1.20517 0.93264 0.85190 0.98181 1.21942 0.99572 0.93421 1.02643 1.21346 0.91746 0.84595 1.02382 1.46107 1.10631 1.05835 1.75197 1.20313 0.89273 0.83620 0.75648 1.90605 1.17029 1.84328 1.49096 1.22018 0.93501 0.94641 0.99492 1.22144 0.95288 0.93296 0.98829 1.23107 0.96520 1.01929 0.95726 1.22687 0.99423 0.98186 0.97202 1.23077 0.96539 1.01933 0.95741 1.22997 0.94394 1.02243 0.96768 1.22868 0.97776 1.01092 0.95753 1.22964 0.94410 1.02245 0.96791 0.93501 0.78311 0.96079 0.96077 0.91365 0.91354 0.91416 0.91409 0.76707 0.88993 0.88016 0.92682 0.91152 0.91600 0.92707 0.88008 0.89557 0.90539 0.89881 0.90852 0.90550 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 10 C 0.16 3.13 6.26 -4.04 -0.03 3.11 16 11 C -0.14 -2.10 5.44 -26.73 -0.15 -2.24 16 12 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 13 N -0.73 -8.29 5.15 -60.29 -0.31 -8.60 16 14 C 0.52 6.37 6.46 -10.98 -0.07 6.29 16 15 O -0.53 -8.05 11.56 5.56 0.06 -7.99 16 16 C -0.09 -0.85 0.79 -154.85 -0.12 -0.97 16 17 C -0.08 -0.71 3.14 -89.81 -0.28 -0.99 16 18 C -0.14 -1.40 7.25 -25.83 -0.19 -1.58 16 19 C -0.14 -1.35 8.09 -25.83 -0.21 -1.56 16 20 C -0.14 -1.40 7.24 -25.92 -0.19 -1.59 16 21 C -0.13 -0.96 7.10 -25.82 -0.18 -1.14 16 22 C -0.14 -0.87 7.77 -25.82 -0.20 -1.07 16 23 C -0.13 -0.96 7.09 -25.92 -0.18 -1.14 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 25 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.40 3.73 6.79 -40.82 -0.28 3.45 16 33 H 0.09 0.72 7.56 -51.93 -0.39 0.32 16 34 H 0.10 1.30 5.67 -51.93 -0.29 1.01 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 1.30 5.67 -51.93 -0.29 1.01 16 40 H 0.09 0.64 7.22 -51.93 -0.38 0.27 16 41 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.08 0.47 7.72 -51.93 -0.40 0.07 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.09 0.64 7.22 -51.93 -0.37 0.27 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -31.69 351.46 -9.41 -41.10 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.76 Total: 8.13 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.07 Total: -8.73 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.08 Total: -55.31 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.06 Total: -7.99 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.69 -9.41 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163456579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.597 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds