Wall clock time and date at job start Tue Mar 31 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48503 * 109.47283 * 270.00067 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99791 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.52995 * 112.85050 * 180.02562 * 16 14 13 18 18 C 1.53780 * 113.61729 * 48.80039 * 17 16 14 19 19 C 1.53951 * 87.02346 * 220.05268 * 18 17 16 20 20 C 1.53781 * 87.11012 * 25.36172 * 19 18 17 21 21 C 1.53781 * 113.61269 * 48.80500 * 16 14 13 22 22 C 1.53963 * 87.01707 * 220.04849 * 21 16 14 23 23 C 1.53777 * 87.11168 * 25.36258 * 22 21 16 24 24 H 0.97005 * 119.99630 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 27 27 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 28 28 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 29 29 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 32 32 H 0.97000 * 120.00420 * 0.02562 * 13 12 11 33 33 H 1.09000 * 112.85106 * 180.02562 * 17 16 14 34 34 H 1.09005 * 113.61436 * 334.57015 * 18 17 16 35 35 H 1.09001 * 113.61517 * 105.46976 * 18 17 16 36 36 H 1.09005 * 113.53537 * 270.80944 * 19 18 17 37 37 H 1.09001 * 113.74234 * 139.94697 * 19 18 17 38 38 H 1.09004 * 113.61384 * 220.08915 * 20 19 18 39 39 H 1.08999 * 113.68812 * 89.20541 * 20 19 18 40 40 H 1.08999 * 113.61762 * 334.56592 * 21 16 14 41 41 H 1.09002 * 113.61117 * 105.47550 * 21 16 14 42 42 H 1.09004 * 113.53445 * 270.81187 * 22 21 16 43 43 H 1.08999 * 113.74059 * 139.94814 * 22 21 16 44 44 H 1.08996 * 113.61597 * 220.08742 * 23 22 21 45 45 H 1.09000 * 113.61424 * 89.18559 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1448 0.0005 13 7 0.8766 -7.2582 0.0005 14 6 1.3258 -8.5289 0.0005 15 8 2.5182 -8.7506 0.0001 16 6 0.3464 -9.6744 0.0000 17 6 1.0319 -11.0421 0.0007 18 6 2.1369 -11.1770 1.0617 19 6 2.9512 -11.9397 0.0009 20 6 2.1384 -11.1772 -1.0588 21 6 -0.7588 -9.5393 -1.0608 22 6 -1.7323 -10.0842 0.0003 23 6 -0.7597 -9.5396 1.0597 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 0.0005 26 1 2.6846 -3.7145 0.8905 27 1 2.6846 -3.7146 -0.8894 28 1 0.4367 -4.7621 -0.8886 29 1 0.4373 -4.7618 0.8913 30 1 2.4547 -6.2024 -0.8899 31 1 2.4558 -6.2026 0.8901 32 1 -0.0771 -7.0810 0.0005 33 1 0.3236 -11.8706 -0.0002 34 1 2.5816 -10.2251 1.3523 35 1 1.8492 -11.7894 1.9163 36 1 2.7684 -13.0143 0.0015 37 1 4.0124 -11.6909 -0.0003 38 1 1.8521 -11.7898 -1.9136 39 1 2.5826 -10.2254 -1.3500 40 1 -0.9617 -8.5085 -1.3511 41 1 -0.6270 -10.2028 -1.9155 42 1 -1.8131 -11.1712 -0.0005 43 1 -2.7025 -9.5875 0.0019 44 1 -0.6288 -10.2033 1.9144 45 1 -0.9629 -8.5089 1.3502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163456579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:27 Heat of formation + Delta-G solvation = -13.805712 kcal Electronic energy + Delta-G solvation = -22063.498617 eV Core-core repulsion = 18888.377320 eV Total energy + Delta-G solvation = -3175.121297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15757 -39.14620 -38.10590 -37.37594 -35.76055 -33.68536 -31.30786 -28.68321 -27.11936 -27.04774 -25.87278 -25.19607 -23.91175 -22.60770 -21.89061 -20.68776 -19.88910 -19.11108 -17.69833 -17.26681 -16.82382 -16.61704 -16.23795 -16.08417 -15.68854 -15.30167 -15.25533 -14.82238 -14.55949 -14.13960 -13.86641 -13.40360 -13.29495 -13.28191 -12.88866 -12.79676 -12.72890 -12.57956 -12.42139 -12.25308 -12.08050 -12.01681 -11.88971 -11.80118 -11.42048 -11.41274 -10.96306 -10.84899 -10.77890 -10.21750 -10.03288 -9.03864 -7.98133 -5.27504 1.46959 1.48649 1.57285 1.62732 2.18662 2.55383 3.35731 3.46086 3.54209 3.61147 3.74726 3.89113 3.92615 4.03814 4.04117 4.06273 4.22916 4.26666 4.33104 4.46253 4.64901 4.70394 4.71195 4.78604 4.79208 4.85096 4.89776 4.96092 5.02504 5.10174 5.11540 5.15677 5.17758 5.22187 5.26357 5.29084 5.39968 5.47157 5.49011 5.54072 5.80602 6.24703 6.58852 7.30584 7.31148 8.05297 8.29518 9.25418 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032901 B = 0.002782 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.836732 B =10060.821784 C =10633.186530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.153 3.847 11 C -0.118 4.118 12 C 0.136 3.864 13 N -0.719 5.719 14 C 0.519 3.481 15 O -0.567 6.567 16 C -0.097 4.097 17 C -0.068 4.068 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.126 4.126 24 H 0.253 0.747 25 H 0.376 0.624 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.410 0.590 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 -26.900 0.032 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.026 3.974 11 C -0.156 4.156 12 C 0.011 3.989 13 N -0.372 5.372 14 C 0.307 3.693 15 O -0.447 6.447 16 C -0.100 4.100 17 C -0.086 4.086 18 C -0.177 4.177 19 C -0.173 4.173 20 C -0.177 4.177 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.163 4.163 24 H 0.062 0.938 25 H 0.208 0.792 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.247 0.753 33 H 0.135 0.865 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.705 -26.942 0.040 27.077 hybrid contribution -0.036 1.453 -0.017 1.453 sum -2.741 -25.489 0.024 25.636 Atomic orbital electron populations 1.69807 1.06562 1.26241 1.59275 1.25591 0.96487 1.01162 1.03436 0.85120 0.77697 0.79292 0.77531 1.21258 1.21903 1.19527 1.19643 0.91542 0.85431 1.41634 0.90789 1.42541 1.05736 1.01148 1.89558 1.20668 0.94080 0.84804 0.97872 1.21694 0.98456 0.92287 1.03143 1.21035 0.91719 0.84527 1.01622 1.45981 1.10922 1.05253 1.74998 1.20974 0.89435 0.84268 0.74635 1.90605 1.18750 1.84813 1.50496 1.22108 0.93194 0.93200 1.01489 1.22171 0.95118 0.94051 0.97260 1.23027 0.97241 1.00779 0.96667 1.22727 0.98444 0.99327 0.96851 1.22996 0.97266 1.00784 0.96680 1.23039 0.93840 1.02600 0.96850 1.22842 0.97596 1.01869 0.93872 1.23005 0.93849 1.02604 0.96872 0.93841 0.79211 0.96130 0.96116 0.90838 0.90826 0.92251 0.92244 0.75306 0.86542 0.90996 0.91299 0.88990 0.93152 0.91332 0.90988 0.89531 0.90155 0.88620 0.89777 0.90163 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.75 -38.27 5.60 -343.45 -1.92 -40.19 16 10 C 0.15 6.09 6.26 86.38 0.54 6.63 16 11 C -0.12 -3.51 5.44 30.59 0.17 -3.35 16 12 C 0.14 3.64 5.67 86.38 0.49 4.13 16 13 N -0.72 -15.94 5.15 -463.05 -2.38 -18.32 16 14 C 0.52 12.44 6.46 87.66 0.57 13.01 16 15 O -0.57 -17.65 11.56 -3.02 -0.03 -17.68 16 16 C -0.10 -1.62 0.79 -52.40 -0.04 -1.66 16 17 C -0.07 -1.12 3.14 -10.27 -0.03 -1.15 16 18 C -0.14 -2.78 7.25 31.18 0.23 -2.55 16 19 C -0.14 -2.58 8.09 31.18 0.25 -2.33 16 20 C -0.14 -2.78 7.24 31.12 0.23 -2.56 16 21 C -0.13 -1.61 7.10 31.18 0.22 -1.39 16 22 C -0.12 -1.17 7.77 31.18 0.24 -0.93 16 23 C -0.13 -1.61 7.09 31.12 0.22 -1.39 16 24 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 25 H 0.38 20.08 7.67 -92.71 -0.71 19.37 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.41 7.11 6.79 -92.71 -0.63 6.48 16 33 H 0.12 1.40 7.56 -2.39 -0.02 1.39 16 34 H 0.07 1.90 5.67 -2.38 -0.01 1.88 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.90 5.67 -2.39 -0.01 1.89 16 40 H 0.09 1.11 7.22 -2.39 -0.02 1.09 16 41 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 42 H 0.10 0.70 7.72 -2.38 -0.02 0.68 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.98 8.10 -2.39 -0.02 0.97 16 45 H 0.09 1.11 7.22 -2.39 -0.02 1.09 16 Total: -1.00 -68.26 351.46 1.99 -66.27 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.36 Total: 31.24 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.38 Total: -10.76 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.03 Total: -117.38 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.03 Total: -17.68 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -68.26 1.99 -66.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163456579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.463 kcal (2) G-P(sol) polarization free energy of solvation -68.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds