Wall clock time and date at job start Tue Mar 31 2020 01:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34951 * 126.03519 * 2 1 4 4 C 1.35320 * 107.74087 * 180.14464 * 3 2 1 5 5 C 1.50697 * 126.03559 * 179.86911 * 4 3 2 6 6 C 1.52996 * 109.47491 * 269.71891 * 5 4 3 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47273 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47033 * 180.02562 * 12 11 10 14 14 C 1.36930 * 120.00034 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99872 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00052 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00067 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46968 * 59.99596 * 18 16 14 20 20 H 1.48494 * 109.47455 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47179 * 299.99993 * 18 16 14 22 22 C 1.39869 * 107.92469 * 359.61625 * 4 3 2 23 23 N 1.30841 * 108.19752 * 0.23711 * 22 4 3 24 24 H 1.09002 * 109.47085 * 270.25795 * 1 2 3 25 25 H 1.09003 * 109.47190 * 30.25749 * 1 2 3 26 26 H 1.09002 * 109.47163 * 150.25983 * 1 2 3 27 27 H 1.07999 * 126.12914 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.46801 * 149.71930 * 5 4 3 29 29 H 1.09000 * 109.47461 * 29.72462 * 5 4 3 30 30 H 1.09004 * 109.47066 * 60.00201 * 6 5 4 31 31 H 1.08994 * 109.47405 * 300.00031 * 6 5 4 32 32 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 33 33 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 34 34 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 35 35 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 36 36 H 1.09011 * 109.47062 * 60.00275 * 11 10 9 37 37 H 1.08992 * 109.47143 * 300.00104 * 12 11 10 38 38 H 1.08997 * 109.46799 * 60.00311 * 12 11 10 39 39 H 0.97005 * 119.99806 * 0.02562 * 13 12 11 40 40 H 0.96998 * 120.00171 * 180.02562 * 17 16 14 41 41 H 1.07997 * 125.90094 * 180.26438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7679 1.5453 -0.0072 6 6 5.1824 1.8360 -1.4510 7 6 6.4063 2.7153 -1.4549 8 8 6.8989 3.0737 -0.4061 9 7 6.9572 3.0983 -2.6238 10 6 8.1505 3.9481 -2.6276 11 6 8.5680 4.2348 -4.0713 12 6 9.8138 5.1229 -4.0752 13 7 10.2132 5.3979 -5.4577 14 6 11.3101 6.1773 -5.7114 15 1 11.8805 6.5896 -4.8923 16 6 11.6881 6.4383 -7.0213 17 7 10.9926 5.9361 -8.0195 18 14 13.1841 7.5022 -7.3674 19 1 14.3877 6.8749 -6.7647 20 1 13.3739 7.6272 -8.8348 21 1 12.9803 8.8497 -6.7775 22 6 3.5347 -0.7321 0.0036 23 7 2.2891 -1.1327 0.0056 24 1 -0.3633 0.0046 1.0277 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5098 27 1 1.9281 2.1194 -0.0004 28 1 5.5820 1.0365 0.5091 29 1 4.5441 2.4825 0.5023 30 1 4.3684 2.3448 -1.9673 31 1 5.4063 0.8988 -1.9605 32 1 6.5635 2.8114 -3.4626 33 1 7.9294 4.8872 -2.1204 34 1 8.9619 3.4374 -2.1089 35 1 8.7889 3.2959 -4.5789 36 1 7.7564 4.7458 -4.5896 37 1 9.5924 6.0617 -3.5678 38 1 10.6255 4.6123 -3.5569 39 1 9.7005 5.0277 -6.1934 40 1 11.2570 6.1182 -8.9348 41 1 4.4054 -1.3710 0.0071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176871560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:36 Heat of formation + Delta-G solvation = 36.683204 kcal Electronic energy + Delta-G solvation = -20128.154446 eV Core-core repulsion = 16851.682169 eV Total energy + Delta-G solvation = -3276.472277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52611 -39.65796 -36.08612 -34.62532 -34.28393 -32.90696 -31.95155 -30.09910 -29.27343 -27.28340 -25.40660 -23.90156 -22.38978 -21.43208 -21.18957 -20.48790 -20.00526 -17.44664 -17.06662 -16.58818 -15.97164 -15.92912 -15.69771 -14.98071 -14.72229 -14.56502 -14.01426 -13.72011 -13.43373 -13.26306 -13.17352 -13.05379 -12.92799 -12.49252 -12.27569 -12.14778 -11.61213 -11.34498 -10.94218 -10.89953 -10.78694 -10.77808 -10.59696 -10.12075 -9.85094 -9.76178 -9.67836 -9.00557 -8.87006 -8.67888 -6.93084 -5.76713 -3.05608 1.54259 2.17535 2.45147 2.65975 3.25665 3.45135 3.49140 3.50474 4.14357 4.48603 4.59574 4.65577 4.68772 4.76418 4.89502 4.94702 4.99290 5.13954 5.28134 5.30906 5.35246 5.46335 5.55938 5.58107 5.65202 5.96402 6.01604 6.02649 6.08737 6.20658 6.33146 6.33654 6.50675 6.65239 6.80098 6.84365 7.35889 7.52141 7.70178 8.24172 8.42312 9.53304 10.10587 10.45318 11.46240 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.049809 B = 0.001933 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.012514 B =14479.129346 C =14744.708662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.056 3.944 4 C -0.234 4.234 5 C -0.024 4.024 6 C -0.134 4.134 7 C 0.508 3.492 8 O -0.545 6.545 9 N -0.730 5.730 10 C 0.122 3.878 11 C -0.137 4.137 12 C 0.156 3.844 13 N -0.734 5.734 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.053 3.947 23 N -0.300 5.300 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.173 0.827 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.401 0.599 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.149 -12.190 15.496 29.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.090 4.090 4 C -0.246 4.246 5 C -0.063 4.063 6 C -0.175 4.175 7 C 0.295 3.705 8 O -0.423 6.423 9 N -0.381 5.381 10 C -0.002 4.002 11 C -0.176 4.176 12 C 0.028 3.972 13 N -0.378 5.378 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.584 5.584 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.133 4.133 23 N -0.122 5.122 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.191 0.809 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -22.605 -12.825 16.271 30.663 hybrid contribution 0.929 1.070 -1.040 1.758 sum -21.676 -11.755 15.231 28.983 Atomic orbital electron populations 1.21854 0.74255 1.04528 1.03347 1.48470 1.06635 1.03911 1.57123 1.22387 0.90926 0.93390 1.02298 1.20136 0.94486 0.94011 1.15960 1.19577 0.93557 0.98459 0.94674 1.21692 0.95886 1.00095 0.99796 1.20762 0.85376 0.80738 0.83650 1.90705 1.63549 1.56517 1.31482 1.46139 1.30623 1.52717 1.08646 1.21344 0.86609 0.94376 0.97885 1.21942 0.99807 1.01250 0.94563 1.20527 0.92579 0.95362 0.88764 1.42332 1.33369 1.61116 1.00978 1.19210 1.03391 1.22780 0.91821 0.91133 1.24753 0.99533 1.01231 0.95549 1.69648 1.41175 1.49308 0.98233 0.86235 0.82638 0.80280 0.76843 1.21226 1.21678 1.21235 1.23861 0.95163 0.94688 0.99563 1.77363 1.01812 1.08336 1.24646 0.90808 0.89431 0.89310 0.80936 0.90318 0.90667 0.89147 0.88888 0.76554 0.91466 0.91425 0.91324 0.91359 0.96075 0.96049 0.78310 0.93465 0.79982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.47 59.85 0.69 1.08 16 2 N -0.38 -3.03 4.01 -68.16 -0.27 -3.31 16 3 C 0.06 0.41 11.40 -17.22 -0.20 0.21 16 4 C -0.23 -1.95 5.35 -105.05 -0.56 -2.51 16 5 C -0.02 -0.20 4.99 -27.89 -0.14 -0.34 16 6 C -0.13 -1.07 5.68 -27.88 -0.16 -1.23 16 7 C 0.51 5.97 7.83 -10.98 -0.09 5.88 16 8 O -0.55 -8.58 15.98 5.55 0.09 -8.49 16 9 N -0.73 -8.14 5.56 -60.29 -0.33 -8.48 16 10 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 11 C -0.14 -2.09 5.44 -26.73 -0.15 -2.24 16 12 C 0.16 3.12 6.26 -4.04 -0.03 3.10 16 13 N -0.73 -18.75 5.60 -59.91 -0.34 -19.08 16 14 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 18 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.05 0.48 11.96 -17.36 -0.21 0.27 16 23 N -0.30 -3.10 12.58 30.62 0.39 -2.72 16 24 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.38 10.17 7.67 -40.82 -0.31 9.85 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -35.97 353.37 -7.09 -43.06 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.54 Total: 5.50 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.10 Total: -1.67 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.17 Total: -61.23 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.97 -7.09 -43.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176871560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.742 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds