Wall clock time and date at job start Tue Mar 31 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34951 * 126.03519 * 2 1 4 4 C 1.35320 * 107.74087 * 180.14464 * 3 2 1 5 5 C 1.50697 * 126.03559 * 179.86911 * 4 3 2 6 6 C 1.52996 * 109.47491 * 269.71891 * 5 4 3 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47273 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47033 * 180.02562 * 12 11 10 14 14 C 1.36930 * 120.00034 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99872 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00052 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00067 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46968 * 59.99596 * 18 16 14 20 20 H 1.48494 * 109.47455 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47179 * 299.99993 * 18 16 14 22 22 C 1.39869 * 107.92469 * 359.61625 * 4 3 2 23 23 N 1.30841 * 108.19752 * 0.23711 * 22 4 3 24 24 H 1.09002 * 109.47085 * 270.25795 * 1 2 3 25 25 H 1.09003 * 109.47190 * 30.25749 * 1 2 3 26 26 H 1.09002 * 109.47163 * 150.25983 * 1 2 3 27 27 H 1.07999 * 126.12914 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.46801 * 149.71930 * 5 4 3 29 29 H 1.09000 * 109.47461 * 29.72462 * 5 4 3 30 30 H 1.09004 * 109.47066 * 60.00201 * 6 5 4 31 31 H 1.08994 * 109.47405 * 300.00031 * 6 5 4 32 32 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 33 33 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 34 34 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 35 35 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 36 36 H 1.09011 * 109.47062 * 60.00275 * 11 10 9 37 37 H 1.08992 * 109.47143 * 300.00104 * 12 11 10 38 38 H 1.08997 * 109.46799 * 60.00311 * 12 11 10 39 39 H 0.97005 * 119.99806 * 0.02562 * 13 12 11 40 40 H 0.96998 * 120.00171 * 180.02562 * 17 16 14 41 41 H 1.07997 * 125.90094 * 180.26438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7679 1.5453 -0.0072 6 6 5.1824 1.8360 -1.4510 7 6 6.4063 2.7153 -1.4549 8 8 6.8989 3.0737 -0.4061 9 7 6.9572 3.0983 -2.6238 10 6 8.1505 3.9481 -2.6276 11 6 8.5680 4.2348 -4.0713 12 6 9.8138 5.1229 -4.0752 13 7 10.2132 5.3979 -5.4577 14 6 11.3101 6.1773 -5.7114 15 1 11.8805 6.5896 -4.8923 16 6 11.6881 6.4383 -7.0213 17 7 10.9926 5.9361 -8.0195 18 14 13.1841 7.5022 -7.3674 19 1 14.3877 6.8749 -6.7647 20 1 13.3739 7.6272 -8.8348 21 1 12.9803 8.8497 -6.7775 22 6 3.5347 -0.7321 0.0036 23 7 2.2891 -1.1327 0.0056 24 1 -0.3633 0.0046 1.0277 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5098 27 1 1.9281 2.1194 -0.0004 28 1 5.5820 1.0365 0.5091 29 1 4.5441 2.4825 0.5023 30 1 4.3684 2.3448 -1.9673 31 1 5.4063 0.8988 -1.9605 32 1 6.5635 2.8114 -3.4626 33 1 7.9294 4.8872 -2.1204 34 1 8.9619 3.4374 -2.1089 35 1 8.7889 3.2959 -4.5789 36 1 7.7564 4.7458 -4.5896 37 1 9.5924 6.0617 -3.5678 38 1 10.6255 4.6123 -3.5569 39 1 9.7005 5.0277 -6.1934 40 1 11.2570 6.1182 -8.9348 41 1 4.4054 -1.3710 0.0071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176871560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:35 Heat of formation + Delta-G solvation = 10.869102 kcal Electronic energy + Delta-G solvation = -20129.273829 eV Core-core repulsion = 16851.682169 eV Total energy + Delta-G solvation = -3277.591660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10094 -40.63369 -37.52061 -35.89181 -35.20652 -33.76915 -33.40933 -31.42705 -30.24483 -27.91751 -26.82467 -25.05894 -23.84553 -22.54446 -21.98235 -21.30333 -20.80994 -19.17039 -18.06992 -17.37935 -17.08661 -16.92326 -16.46529 -16.21140 -16.02410 -15.32675 -15.27295 -15.13781 -14.69162 -14.50075 -13.93345 -13.79003 -13.62590 -13.41152 -13.28892 -12.97628 -12.79971 -12.76965 -12.55347 -12.41214 -12.08853 -12.03251 -11.97601 -11.78537 -11.41223 -10.93147 -10.83874 -10.34277 -10.02913 -9.26512 -9.01399 -7.96000 -5.25218 0.98606 1.48294 1.51416 1.57593 1.73203 1.74408 1.82365 2.33044 2.57685 3.37619 3.67973 3.79776 3.91689 4.04015 4.10916 4.27933 4.28421 4.32991 4.40732 4.46155 4.48824 4.66188 4.71963 4.74568 4.76556 4.79121 4.86345 4.92354 4.98732 5.30052 5.32532 5.33465 5.39405 5.49062 5.51775 5.74596 6.18543 6.26598 6.64558 6.77087 7.33020 7.34497 8.08001 8.31964 9.27230 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.049809 B = 0.001933 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.012514 B =14479.129346 C =14744.708662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.061 3.939 4 C -0.248 4.248 5 C -0.015 4.015 6 C -0.122 4.122 7 C 0.507 3.493 8 O -0.589 6.589 9 N -0.721 5.721 10 C 0.132 3.868 11 C -0.118 4.118 12 C 0.151 3.849 13 N -0.747 5.747 14 C -0.252 4.252 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.968 5.968 18 Si 0.976 3.024 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.278 1.278 22 C 0.043 3.957 23 N -0.340 5.340 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.204 0.796 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.415 0.585 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.376 0.624 40 H 0.252 0.748 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.187 -11.927 15.678 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.085 4.085 4 C -0.260 4.260 5 C -0.055 4.055 6 C -0.162 4.162 7 C 0.296 3.704 8 O -0.469 6.469 9 N -0.374 5.374 10 C 0.008 3.992 11 C -0.156 4.156 12 C 0.024 3.976 13 N -0.390 5.390 14 C -0.384 4.384 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.804 3.196 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.204 1.204 22 C -0.142 4.142 23 N -0.162 5.162 24 H 0.102 0.898 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.220 0.780 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.252 0.748 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.208 0.792 40 H 0.061 0.939 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -23.673 -12.585 16.471 31.465 hybrid contribution 1.188 0.981 -1.023 1.850 sum -22.485 -11.603 15.448 29.645 Atomic orbital electron populations 1.22169 0.72255 1.05876 1.04443 1.48811 1.07886 1.03497 1.56336 1.22883 0.90575 0.94493 1.00583 1.20141 0.94876 0.93666 1.17273 1.19436 0.93285 0.97968 0.94769 1.21678 0.94498 1.00082 0.99952 1.21419 0.85878 0.80320 0.82816 1.90691 1.64985 1.58243 1.33012 1.46022 1.29766 1.52064 1.09510 1.21049 0.87425 0.94481 0.96281 1.21697 0.97713 1.00410 0.95777 1.20694 0.94619 0.96289 0.86002 1.42535 1.32782 1.60780 1.02870 1.19625 1.04046 1.22593 0.92122 0.90735 1.25593 1.02628 1.03030 0.95469 1.69797 1.42870 1.50889 0.98306 0.85184 0.79306 0.78770 0.76325 1.20407 1.21937 1.20363 1.24160 0.95344 0.95413 0.99273 1.77300 1.02614 1.10057 1.26261 0.89838 0.86705 0.89386 0.77953 0.91713 0.91314 0.86861 0.87247 0.74811 0.92168 0.92278 0.90841 0.90758 0.96046 0.96106 0.79231 0.93886 0.78876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.47 127.77 1.47 2.01 16 2 N -0.38 -5.52 4.01 -369.56 -1.48 -7.00 16 3 C 0.06 0.76 11.40 83.54 0.95 1.72 16 4 C -0.25 -3.78 5.35 -20.14 -0.11 -3.89 16 5 C -0.02 -0.24 4.99 29.85 0.15 -0.09 16 6 C -0.12 -1.68 5.68 29.85 0.17 -1.51 16 7 C 0.51 11.17 7.83 87.66 0.69 11.86 16 8 O -0.59 -18.29 15.98 -3.04 -0.05 -18.33 16 9 N -0.72 -14.76 5.56 -463.06 -2.57 -17.34 16 10 C 0.13 3.44 5.67 86.38 0.49 3.93 16 11 C -0.12 -3.44 5.44 30.59 0.17 -3.27 16 12 C 0.15 5.96 6.26 86.38 0.54 6.50 16 13 N -0.75 -38.05 5.60 -343.46 -1.92 -39.97 16 14 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 15 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 16 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 17 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 18 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 C 0.04 0.75 11.96 85.24 1.02 1.77 16 23 N -0.34 -6.82 12.58 -57.02 -0.72 -7.54 16 24 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.11 0.02 8.14 -2.39 -0.02 0.01 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 28 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 29 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 30 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.42 6.12 8.47 -92.71 -0.79 5.33 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.38 19.98 7.67 -92.70 -0.71 19.27 16 40 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.19 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -77.20 353.37 1.93 -75.27 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.47 Total: 23.73 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 6.84 Total: 1.74 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -6.41 Total: -130.57 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.05 Total: -18.33 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -77.20 1.93 -75.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176871560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.137 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds