Wall clock time and date at job start Tue Mar 31 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46500 * 109.47171 * 2 1 4 4 C 1.46504 * 120.00028 * 270.00054 * 3 2 1 5 5 C 1.52996 * 109.46878 * 270.00036 * 4 3 2 6 6 N 1.46504 * 109.46882 * 179.97438 * 5 4 3 7 7 C 1.36935 * 119.99993 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00228 * 0.02562 * 7 6 5 9 9 C 1.38811 * 119.99997 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00350 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47171 * 89.99722 * 11 9 7 13 13 H 1.48496 * 109.46772 * 210.00105 * 11 9 7 14 14 H 1.48503 * 109.46946 * 329.99471 * 11 9 7 15 15 C 1.34776 * 119.99870 * 90.00108 * 3 2 1 16 16 O 1.21284 * 119.99993 * 180.02562 * 15 3 2 17 17 C 1.50698 * 120.00297 * 359.97438 * 15 3 2 18 18 C 1.52998 * 109.47192 * 180.02562 * 17 15 3 19 19 C 1.50698 * 109.47192 * 179.97438 * 18 17 15 20 20 C 1.39874 * 126.04031 * 269.99886 * 19 18 17 21 21 N 1.30836 * 108.20052 * 179.73886 * 20 19 18 22 22 N 1.40084 * 108.20904 * 0.40640 * 21 20 19 23 23 H 0.97001 * 126.04219 * 179.85882 * 22 21 20 24 24 C 1.34947 * 107.92164 * 359.58781 * 22 21 20 25 25 H 1.08994 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46549 * 300.00016 * 1 2 3 27 27 H 1.08993 * 109.46682 * 60.00003 * 1 2 3 28 28 H 1.08997 * 109.47093 * 239.99765 * 2 1 3 29 29 H 1.09003 * 109.46723 * 120.00075 * 2 1 3 30 30 H 1.09003 * 109.46882 * 29.99706 * 4 3 2 31 31 H 1.08999 * 109.46900 * 149.99701 * 4 3 2 32 32 H 1.08994 * 109.47251 * 299.99820 * 5 4 3 33 33 H 1.09005 * 109.46980 * 60.00263 * 5 4 3 34 34 H 0.97000 * 119.99893 * 0.02562 * 6 5 4 35 35 H 0.96994 * 120.00398 * 179.97438 * 10 9 7 36 36 H 1.08994 * 109.46963 * 59.99584 * 17 15 3 37 37 H 1.09004 * 109.46771 * 299.99960 * 17 15 3 38 38 H 1.09007 * 109.47384 * 60.00098 * 18 17 15 39 39 H 1.09002 * 109.46954 * 300.00115 * 18 17 15 40 40 H 1.08001 * 125.89534 * 0.02562 * 20 19 18 41 41 H 1.08006 * 126.12506 * 180.22115 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9516 2.5215 -2.9794 7 6 5.1839 2.4493 -3.5722 8 1 5.9758 1.8833 -3.1044 9 6 5.4152 3.1036 -4.7743 10 7 4.4500 3.7931 -5.3448 11 14 7.0961 3.0045 -5.5833 12 1 7.1373 1.8351 -6.4977 13 1 7.3470 4.2469 -6.3570 14 1 8.1402 2.8529 -4.5383 15 6 2.2431 2.0165 1.1672 16 8 2.6469 3.1601 1.1672 17 6 1.9914 1.3063 2.4723 18 6 2.3224 2.2439 3.6352 19 6 2.0701 1.5339 4.9403 20 6 0.8661 1.5236 5.6522 21 7 1.0338 0.7985 6.7283 22 7 2.3545 0.3314 6.7399 23 1 2.7557 -0.2289 7.4226 24 6 2.9682 0.7937 5.6306 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3632 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0956 3.1410 -1.1384 32 1 4.3884 2.2155 -0.9508 33 1 3.8745 0.7621 -1.8408 34 1 3.2404 3.0302 -3.3994 35 1 4.6118 4.2506 -6.1846 36 1 2.6212 0.4186 2.5302 37 1 0.9433 1.0126 2.5298 38 1 1.6922 3.1314 3.5771 39 1 3.3704 2.5380 3.5778 40 1 -0.0459 2.0237 5.3613 41 1 3.9929 0.6067 5.3450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273653209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:05 Heat of formation + Delta-G solvation = 42.672048 kcal Electronic energy + Delta-G solvation = -21295.456455 eV Core-core repulsion = 18019.243874 eV Total energy + Delta-G solvation = -3276.212581 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44571 -39.80662 -36.21000 -34.63267 -34.04154 -31.78687 -31.52885 -30.25469 -29.53058 -27.46146 -24.70785 -23.61666 -22.96205 -22.22993 -21.35986 -20.19734 -18.75430 -18.07968 -17.13943 -16.80724 -16.05077 -15.49705 -14.86989 -14.73414 -14.57464 -14.00889 -13.89663 -13.86602 -13.49347 -13.21488 -12.99586 -12.91208 -12.55437 -12.39569 -12.31184 -11.74483 -11.41690 -11.22120 -11.08433 -10.94030 -10.84886 -10.72633 -10.62672 -10.08644 -9.93856 -9.75059 -9.56071 -8.84097 -8.73268 -8.44902 -6.89622 -5.73071 -3.02057 1.61007 2.48500 2.62208 2.83974 3.17972 3.46177 3.51155 3.53406 4.44461 4.63310 4.63799 4.66358 4.85027 4.99874 5.06264 5.13660 5.23609 5.30686 5.42458 5.48045 5.56020 5.59884 5.68695 5.70746 5.73200 5.88328 6.06174 6.08578 6.11313 6.13031 6.20644 6.38488 6.63603 6.79934 6.96029 6.97683 7.35852 7.60663 7.73048 8.39700 8.45943 9.56367 10.13270 10.48280 11.49956 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027148 B = 0.002932 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.140393 B = 9548.126013 C =10070.122406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.609 5.609 4 C 0.108 3.892 5 C 0.144 3.856 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.509 3.491 16 O -0.535 6.535 17 C -0.132 4.132 18 C -0.027 4.027 19 C -0.232 4.232 20 C 0.056 3.944 21 N -0.300 5.300 22 N -0.480 5.480 23 H 0.438 0.562 24 C 0.060 3.940 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.022 0.978 33 H 0.016 0.984 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.183 0.817 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 -10.501 21.553 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.343 5.343 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.297 3.703 16 O -0.411 6.411 17 C -0.172 4.172 18 C -0.066 4.066 19 C -0.244 4.244 20 C -0.131 4.131 21 N -0.122 5.122 22 N -0.188 5.188 23 H 0.282 0.718 24 C -0.088 4.088 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.200 0.800 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.609 -10.372 22.564 26.284 hybrid contribution 1.287 -0.014 -1.142 1.721 sum -7.321 -10.386 21.422 24.907 Atomic orbital electron populations 1.22219 0.96013 1.02106 1.02621 1.21568 0.94275 0.82759 1.03393 1.47983 1.65723 1.14177 1.06373 1.21670 0.97957 0.98411 0.83458 1.20901 0.92904 0.95371 0.89312 1.42221 1.12869 1.60810 1.21638 1.19205 0.89308 1.25985 1.02305 0.91236 1.24749 0.97841 1.00385 0.98083 1.69658 1.31583 1.37458 1.19560 0.86165 0.83702 0.76954 0.79239 1.21738 1.21726 1.20758 1.20719 0.77380 0.86837 0.85408 1.90734 1.45083 1.17954 1.87326 1.21726 1.03630 0.99812 0.92025 1.19624 1.03195 0.96462 0.87357 1.20203 0.94106 1.08607 1.01437 1.23880 0.99145 0.97807 0.92240 1.77321 0.95489 1.17158 1.22232 1.46304 1.09388 1.42834 1.20315 0.71830 1.22476 0.99528 0.98040 0.88732 0.91636 0.92523 0.92029 0.89942 0.90528 0.90715 0.89787 0.95975 0.96578 0.78279 0.93499 0.89260 0.89119 0.90303 0.90485 0.80013 0.80616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.10 1.03 5.93 -4.04 -0.02 1.00 16 3 N -0.61 -8.43 2.47 -173.68 -0.43 -8.86 16 4 C 0.11 1.87 5.52 -4.04 -0.02 1.85 16 5 C 0.14 3.07 6.58 -4.04 -0.03 3.05 16 6 N -0.73 -19.32 5.60 -59.91 -0.34 -19.66 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 11 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 15 C 0.51 7.28 7.67 -10.99 -0.08 7.20 16 16 O -0.53 -10.05 15.56 5.55 0.09 -9.96 16 17 C -0.13 -1.27 4.23 -27.88 -0.12 -1.39 16 18 C -0.03 -0.27 4.99 -27.88 -0.14 -0.41 16 19 C -0.23 -2.04 5.35 -105.05 -0.56 -2.60 16 20 C 0.06 0.51 11.96 -17.36 -0.21 0.30 16 21 N -0.30 -3.00 12.70 30.63 0.39 -2.61 16 22 N -0.48 -3.53 7.36 30.45 0.22 -3.31 16 23 H 0.44 1.83 8.96 -182.61 -1.64 0.20 16 24 C 0.06 0.43 11.90 -17.22 -0.21 0.23 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.46 7.22 -51.93 -0.37 0.08 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.08 0.60 6.44 -51.93 -0.33 0.26 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.08 1.63 7.42 -51.93 -0.39 1.25 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.09 0.73 7.40 -51.93 -0.38 0.35 16 37 H 0.09 0.74 7.18 -51.93 -0.37 0.36 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -36.22 346.97 -7.96 -44.17 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.56 Total: 4.67 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.26 Total: 0.61 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.57 Total: -62.55 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.22 -7.96 -44.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273653209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.844 kcal (2) G-P(sol) polarization free energy of solvation -36.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds