Wall clock time and date at job start Tue Mar 31 2020 01:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46500 * 109.47171 * 2 1 4 4 C 1.46504 * 120.00028 * 270.00054 * 3 2 1 5 5 C 1.52996 * 109.46878 * 270.00036 * 4 3 2 6 6 N 1.46504 * 109.46882 * 179.97438 * 5 4 3 7 7 C 1.36935 * 119.99993 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00228 * 0.02562 * 7 6 5 9 9 C 1.38811 * 119.99997 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00350 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47171 * 89.99722 * 11 9 7 13 13 H 1.48496 * 109.46772 * 210.00105 * 11 9 7 14 14 H 1.48503 * 109.46946 * 329.99471 * 11 9 7 15 15 C 1.34776 * 119.99870 * 90.00108 * 3 2 1 16 16 O 1.21284 * 119.99993 * 180.02562 * 15 3 2 17 17 C 1.50698 * 120.00297 * 359.97438 * 15 3 2 18 18 C 1.52998 * 109.47192 * 180.02562 * 17 15 3 19 19 C 1.50698 * 109.47192 * 179.97438 * 18 17 15 20 20 C 1.39874 * 126.04031 * 269.99886 * 19 18 17 21 21 N 1.30836 * 108.20052 * 179.73886 * 20 19 18 22 22 N 1.40084 * 108.20904 * 0.40640 * 21 20 19 23 23 H 0.97001 * 126.04219 * 179.85882 * 22 21 20 24 24 C 1.34947 * 107.92164 * 359.58781 * 22 21 20 25 25 H 1.08994 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46549 * 300.00016 * 1 2 3 27 27 H 1.08993 * 109.46682 * 60.00003 * 1 2 3 28 28 H 1.08997 * 109.47093 * 239.99765 * 2 1 3 29 29 H 1.09003 * 109.46723 * 120.00075 * 2 1 3 30 30 H 1.09003 * 109.46882 * 29.99706 * 4 3 2 31 31 H 1.08999 * 109.46900 * 149.99701 * 4 3 2 32 32 H 1.08994 * 109.47251 * 299.99820 * 5 4 3 33 33 H 1.09005 * 109.46980 * 60.00263 * 5 4 3 34 34 H 0.97000 * 119.99893 * 0.02562 * 6 5 4 35 35 H 0.96994 * 120.00398 * 179.97438 * 10 9 7 36 36 H 1.08994 * 109.46963 * 59.99584 * 17 15 3 37 37 H 1.09004 * 109.46771 * 299.99960 * 17 15 3 38 38 H 1.09007 * 109.47384 * 60.00098 * 18 17 15 39 39 H 1.09002 * 109.46954 * 300.00115 * 18 17 15 40 40 H 1.08001 * 125.89534 * 0.02562 * 20 19 18 41 41 H 1.08006 * 126.12506 * 180.22115 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9516 2.5215 -2.9794 7 6 5.1839 2.4493 -3.5722 8 1 5.9758 1.8833 -3.1044 9 6 5.4152 3.1036 -4.7743 10 7 4.4500 3.7931 -5.3448 11 14 7.0961 3.0045 -5.5833 12 1 7.1373 1.8351 -6.4977 13 1 7.3470 4.2469 -6.3570 14 1 8.1402 2.8529 -4.5383 15 6 2.2431 2.0165 1.1672 16 8 2.6469 3.1601 1.1672 17 6 1.9914 1.3063 2.4723 18 6 2.3224 2.2439 3.6352 19 6 2.0701 1.5339 4.9403 20 6 0.8661 1.5236 5.6522 21 7 1.0338 0.7985 6.7283 22 7 2.3545 0.3314 6.7399 23 1 2.7557 -0.2289 7.4226 24 6 2.9682 0.7937 5.6306 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3632 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0956 3.1410 -1.1384 32 1 4.3884 2.2155 -0.9508 33 1 3.8745 0.7621 -1.8408 34 1 3.2404 3.0302 -3.3994 35 1 4.6118 4.2506 -6.1846 36 1 2.6212 0.4186 2.5302 37 1 0.9433 1.0126 2.5298 38 1 1.6922 3.1314 3.5771 39 1 3.3704 2.5380 3.5778 40 1 -0.0459 2.0237 5.3613 41 1 3.9929 0.6067 5.3450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273653209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:04 Heat of formation + Delta-G solvation = 17.194105 kcal Electronic energy + Delta-G solvation = -21296.561262 eV Core-core repulsion = 18019.243874 eV Total energy + Delta-G solvation = -3277.317388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06564 -40.94637 -37.54239 -36.33574 -34.95846 -33.54638 -32.19734 -31.51939 -30.41643 -28.90338 -26.09402 -24.88942 -24.09777 -23.02901 -22.78729 -20.84515 -19.93269 -19.14549 -18.70629 -17.81690 -17.32813 -16.63382 -16.45228 -15.53619 -15.49449 -15.27387 -15.26810 -15.07524 -14.77381 -14.52716 -14.40767 -13.73044 -13.45899 -13.29194 -13.14269 -12.99198 -12.88968 -12.73821 -12.55052 -12.26224 -12.13050 -12.09590 -11.87350 -11.81125 -11.42615 -10.97656 -10.75983 -10.55480 -9.65900 -9.37862 -9.06387 -7.97616 -5.28478 1.02484 1.46252 1.49273 1.57742 1.72633 1.80540 2.08024 2.15438 2.56497 3.35577 3.59999 3.94691 4.03270 4.10819 4.13812 4.20770 4.24355 4.30085 4.35127 4.48754 4.57217 4.60974 4.68871 4.75992 4.79953 4.93541 4.94361 5.05035 5.09803 5.13842 5.31461 5.39242 5.43106 5.44347 5.63227 5.74443 6.23929 6.49502 6.52163 6.76672 7.28207 7.29958 8.02095 8.27216 9.25918 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027148 B = 0.002932 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.140393 B = 9548.126013 C =10070.122406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.607 5.607 4 C 0.122 3.878 5 C 0.151 3.849 6 N -0.744 5.744 7 C -0.250 4.250 8 H 0.074 0.926 9 C -0.075 4.075 10 N -0.969 5.969 11 Si 0.979 3.021 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.271 1.271 15 C 0.502 3.498 16 O -0.589 6.589 17 C -0.117 4.117 18 C -0.019 4.019 19 C -0.249 4.249 20 C 0.050 3.950 21 N -0.333 5.333 22 N -0.473 5.473 23 H 0.451 0.549 24 C 0.072 3.928 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.001 0.999 33 H 0.029 0.971 34 H 0.375 0.625 35 H 0.253 0.747 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.195 0.805 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 -12.759 22.653 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.340 5.340 4 C -0.002 4.002 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.382 4.382 8 H 0.092 0.908 9 C -0.267 4.267 10 N -0.619 5.619 11 Si 0.807 3.193 12 H -0.208 1.208 13 H -0.220 1.220 14 H -0.196 1.196 15 C 0.292 3.708 16 O -0.469 6.469 17 C -0.157 4.157 18 C -0.058 4.058 19 C -0.260 4.260 20 C -0.136 4.136 21 N -0.156 5.156 22 N -0.182 5.182 23 H 0.297 0.703 24 C -0.076 4.076 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.207 0.793 35 H 0.062 0.938 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.212 0.788 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.262 -12.701 23.719 28.145 hybrid contribution 1.174 0.654 -1.418 1.954 sum -7.088 -12.047 22.301 26.319 Atomic orbital electron populations 1.22180 0.94648 1.03503 1.02129 1.21892 0.95368 0.80335 1.04834 1.48102 1.65364 1.15639 1.04886 1.21259 0.95648 0.97542 0.85720 1.20947 0.94987 0.95084 0.86700 1.42423 1.12051 1.61183 1.23082 1.19597 0.90313 1.25668 1.02587 0.90831 1.25645 1.01803 1.00388 0.98866 1.69819 1.33699 1.38515 1.19894 0.85071 0.79211 0.76814 0.78228 1.20782 1.21985 1.19582 1.21636 0.75982 0.86358 0.86794 1.90712 1.47540 1.20527 1.88114 1.21735 1.05479 0.99767 0.88716 1.19449 1.01976 0.96173 0.88211 1.20114 0.94681 1.09861 1.01394 1.24166 0.99890 0.97560 0.92008 1.77280 0.97013 1.18327 1.22987 1.46351 1.08705 1.42518 1.20668 0.70293 1.22919 1.00352 0.96446 0.87885 0.89241 0.91982 0.93616 0.90092 0.87522 0.89351 0.92474 0.98130 0.95274 0.79333 0.93787 0.86787 0.86819 0.91852 0.91845 0.78785 0.77723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 71.99 0.74 -1.61 16 2 C 0.10 1.66 5.93 86.38 0.51 2.17 16 3 N -0.61 -16.21 2.47 -821.79 -2.03 -18.24 16 4 C 0.12 4.30 5.52 86.38 0.48 4.78 16 5 C 0.15 6.50 6.58 86.38 0.57 7.07 16 6 N -0.74 -40.09 5.60 -343.45 -1.92 -42.01 16 7 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 10 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 11 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 C 0.50 14.06 7.67 87.66 0.67 14.74 16 16 O -0.59 -22.81 15.56 -3.04 -0.05 -22.86 16 17 C -0.12 -2.00 4.23 29.85 0.13 -1.87 16 18 C -0.02 -0.35 4.99 29.85 0.15 -0.20 16 19 C -0.25 -3.91 5.35 -20.14 -0.11 -4.02 16 20 C 0.05 0.83 11.96 85.24 1.02 1.85 16 21 N -0.33 -6.17 12.70 -57.02 -0.72 -6.90 16 22 N -0.47 -5.90 7.36 -57.59 -0.42 -6.32 16 23 H 0.45 2.76 8.96 -213.33 -1.91 0.84 16 24 C 0.07 0.85 11.90 83.54 0.99 1.85 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.82 7.22 -2.38 -0.02 0.80 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 29 H 0.11 1.22 6.44 -2.39 -0.02 1.20 16 30 H 0.09 2.84 8.07 -2.39 -0.02 2.82 16 31 H 0.06 2.32 7.42 -2.39 -0.02 2.30 16 32 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.37 21.20 7.67 -92.71 -0.71 20.49 16 35 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.11 1.43 7.40 -2.39 -0.02 1.41 16 37 H 0.11 1.47 7.18 -2.39 -0.02 1.45 16 38 H 0.06 1.36 8.10 -2.38 -0.02 1.34 16 39 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 40 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -79.79 346.97 2.03 -77.76 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -1.58 Total: 22.88 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.46 Total: 7.07 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -4.82 Total: -133.88 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -79.79 2.03 -77.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273653209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.950 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds