Wall clock time and date at job start Tue Mar 31 2020 01:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99854 * 2 1 4 4 C 1.50696 * 109.47298 * 269.99832 * 3 2 1 5 5 C 1.39866 * 125.89915 * 95.01633 * 4 3 2 6 6 C 1.35320 * 107.91898 * 179.97438 * 5 4 3 7 7 N 1.34951 * 107.74569 * 359.97438 * 6 5 4 8 8 C 1.46504 * 126.03463 * 180.02562 * 7 6 5 9 9 N 1.30844 * 125.89476 * 274.97719 * 4 3 2 10 10 C 1.34774 * 120.00154 * 179.97438 * 2 1 3 11 11 O 1.21584 * 120.00401 * 180.02562 * 10 2 1 12 12 N 1.34783 * 120.00031 * 359.97438 * 10 2 1 13 13 C 1.46491 * 119.99965 * 180.02562 * 12 10 2 14 14 C 1.53006 * 109.47157 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47305 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47430 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99607 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00473 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99694 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47092 * 60.00069 * 20 18 16 22 22 H 1.48499 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47255 * 300.00335 * 20 18 16 24 24 H 1.09001 * 109.46947 * 90.00307 * 1 2 3 25 25 H 1.09003 * 109.47193 * 210.00371 * 1 2 3 26 26 H 1.09000 * 109.47162 * 330.00151 * 1 2 3 27 27 H 1.08999 * 109.47070 * 149.99342 * 3 2 1 28 28 H 1.09004 * 109.47478 * 29.99800 * 3 2 1 29 29 H 1.07993 * 126.04141 * 359.97438 * 5 4 3 30 30 H 1.07996 * 126.12765 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.46927 * 270.02579 * 8 7 6 32 32 H 1.08994 * 109.47314 * 30.02415 * 8 7 6 33 33 H 1.08998 * 109.46715 * 150.02896 * 8 7 6 34 34 H 0.97001 * 119.99825 * 0.02562 * 12 10 2 35 35 H 1.09002 * 109.47466 * 299.99867 * 13 12 10 36 36 H 1.09000 * 109.47357 * 60.00234 * 13 12 10 37 37 H 1.09002 * 109.46352 * 299.99972 * 14 13 12 38 38 H 1.09000 * 109.47268 * 59.99601 * 14 13 12 39 39 H 1.09002 * 109.47084 * 299.99788 * 15 14 13 40 40 H 1.09000 * 109.47366 * 59.99560 * 15 14 13 41 41 H 0.97000 * 119.99652 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6546 2.5857 -2.1610 6 6 2.2126 2.7199 -3.3864 7 7 3.3208 1.9505 -3.4202 8 6 4.2305 1.7990 -4.5586 9 7 3.4477 1.3222 -2.1746 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0016 13 6 2.1975 -3.6031 0.0027 14 6 1.2033 -4.7661 0.0031 15 6 1.9683 -6.0910 0.0049 16 6 0.9891 -7.2365 0.0060 17 1 -0.0728 -7.0392 0.0049 18 6 1.4486 -8.5364 0.0071 19 7 2.7417 -8.7767 0.0078 20 14 0.2348 -9.9562 0.0091 21 1 -0.6194 -9.8788 -1.2031 22 1 0.9773 -11.2423 0.0095 23 1 -0.6185 -9.8763 1.2218 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1498 1.1384 0.5139 28 1 1.6084 2.0284 0.5138 29 1 0.7551 3.0734 -1.8156 30 1 1.8387 3.3334 -4.1927 31 1 3.8961 0.9706 -5.1831 32 1 4.2345 2.7176 -5.1452 33 1 5.2375 1.5960 -4.1944 34 1 0.4950 -2.3344 0.0016 35 1 2.8242 -3.6616 -0.8872 36 1 2.8242 -3.6600 0.8927 37 1 0.5763 -4.7076 0.8929 38 1 0.5769 -4.7089 -0.8871 39 1 2.5956 -6.1496 -0.8846 40 1 2.5944 -6.1479 0.8954 41 1 3.0650 -9.6913 0.0090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340649421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:57 Heat of formation + Delta-G solvation = 48.119472 kcal Electronic energy + Delta-G solvation = -21227.636435 eV Core-core repulsion = 17951.660072 eV Total energy + Delta-G solvation = -3275.976363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30974 -39.81045 -35.98907 -35.09915 -33.62634 -33.06536 -31.12811 -30.27181 -28.86518 -26.94985 -26.42453 -24.96258 -22.83838 -21.27938 -20.56318 -20.34655 -19.29640 -17.80542 -17.13465 -16.50640 -16.09654 -15.67456 -15.46274 -14.60857 -14.50242 -14.22218 -14.01842 -14.00535 -13.55699 -13.15001 -12.95699 -12.84092 -12.61323 -12.44713 -12.23288 -11.87264 -11.73879 -11.60042 -10.85404 -10.64971 -10.61935 -10.58156 -9.95452 -9.80032 -9.47909 -9.33564 -9.09263 -8.86225 -8.72060 -8.44734 -8.33438 -5.98200 -4.01248 1.74363 2.35875 2.42187 3.13727 3.34148 3.38731 3.40772 3.49519 4.18061 4.30985 4.47354 4.58355 4.78573 4.92610 4.94691 5.01805 5.18091 5.30653 5.37290 5.44509 5.50957 5.54652 5.67756 5.77585 5.89485 5.89715 6.26245 6.42057 6.49710 6.63884 6.69570 6.85098 6.88233 7.08926 7.10499 7.65570 7.68058 7.81873 8.01112 8.18723 8.42108 8.87690 9.05342 9.62521 11.13132 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026196 B = 0.002813 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.626079 B = 9951.300320 C =10384.000830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.632 5.632 3 C 0.215 3.785 4 C 0.050 3.950 5 C -0.265 4.265 6 C 0.045 3.955 7 N -0.379 5.379 8 C 0.101 3.899 9 N -0.259 5.259 10 C 0.701 3.299 11 O -0.578 6.578 12 N -0.742 5.742 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.171 0.829 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.392 0.608 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 26.587 -5.566 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.371 5.371 3 C 0.090 3.910 4 C -0.118 4.118 5 C -0.294 4.294 6 C -0.100 4.100 7 N -0.162 5.162 8 C -0.040 4.040 9 N -0.081 5.081 10 C 0.402 3.598 11 O -0.454 6.454 12 N -0.398 5.398 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.163 0.837 30 H 0.188 0.812 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.415 25.673 -5.774 26.425 hybrid contribution -1.956 -0.307 -0.296 2.002 sum -4.371 25.366 -6.070 26.446 Atomic orbital electron populations 1.21713 0.79869 1.02934 1.01664 1.46980 1.06181 1.04640 1.79298 1.19504 0.98646 0.84117 0.88778 1.22840 0.93772 0.97249 0.97967 1.21363 1.05068 1.08433 0.94581 1.22499 0.89911 0.97939 0.99685 1.48693 1.20656 1.35143 1.11663 1.21848 0.93980 1.02930 0.85259 1.77627 1.22693 1.17697 0.90106 1.15952 0.85471 0.80352 0.77990 1.90937 1.11374 1.85990 1.57120 1.45519 1.09744 1.05142 1.79403 1.21487 0.95107 0.80424 1.01810 1.21882 0.97863 0.95309 1.00707 1.19019 0.95457 0.89167 0.97681 1.21176 0.92956 0.90973 1.50961 0.92721 1.25030 0.95122 0.98998 0.95327 1.69961 1.12529 1.20281 1.50529 0.86641 0.81126 0.81557 0.78558 1.20281 1.21285 1.20245 0.92934 0.91286 0.90803 0.88388 0.88599 0.83675 0.81199 0.90744 0.89622 0.89184 0.77269 0.92127 0.91972 0.92808 0.92898 0.96288 0.96221 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.25 59.85 0.61 1.31 16 2 N -0.63 -8.06 2.86 -188.74 -0.54 -8.60 16 3 C 0.22 2.49 6.01 -5.20 -0.03 2.46 16 4 C 0.05 0.65 6.80 -82.41 -0.56 0.09 16 5 C -0.26 -2.63 10.74 -40.01 -0.43 -3.06 16 6 C 0.05 0.41 11.49 -17.22 -0.20 0.22 16 7 N -0.38 -4.35 4.01 -68.16 -0.27 -4.62 16 8 C 0.10 0.75 11.47 59.85 0.69 1.43 16 9 N -0.26 -3.97 12.58 33.67 0.42 -3.54 16 10 C 0.70 12.04 8.28 -86.91 -0.72 11.32 16 11 O -0.58 -12.37 15.92 5.29 0.08 -12.28 16 12 N -0.74 -12.02 5.42 -65.23 -0.35 -12.37 16 13 C 0.13 2.59 5.67 -4.04 -0.02 2.57 16 14 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 15 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 16 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.55 6.36 -51.93 -0.33 0.22 16 26 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 27 H 0.10 1.32 7.42 -51.93 -0.39 0.94 16 28 H 0.10 0.72 7.89 -51.93 -0.41 0.31 16 29 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.39 5.20 6.20 -40.82 -0.25 4.95 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -37.67 349.80 -7.43 -45.10 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.40 Total: 0.24 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.35 Total: 0.61 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.01 Total: -55.67 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.67 -7.43 -45.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340649421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.216 kcal (2) G-P(sol) polarization free energy of solvation -37.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds