Wall clock time and date at job start Tue Mar 31 2020 01:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46929 * 2 1 4 4 C 1.36736 * 127.13448 * 91.41636 * 3 2 1 5 5 C 1.50699 * 126.35079 * 359.94064 * 4 3 2 6 6 C 1.52998 * 109.47371 * 89.99882 * 5 4 3 7 7 C 1.50699 * 109.47371 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99787 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00153 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00118 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99835 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47279 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46795 * 120.00625 * 11 9 7 14 14 H 1.48502 * 109.47118 * 240.00061 * 11 9 7 15 15 N 1.30294 * 107.30261 * 179.97438 * 4 3 2 16 16 N 1.28520 * 110.05611 * 0.02562 * 15 4 3 17 17 C 1.31226 * 109.86137 * 359.74270 * 16 15 4 18 18 N 1.38580 * 126.47551 * 180.26090 * 17 16 15 19 19 C 1.47009 * 111.00165 * 63.02546 * 18 17 16 20 20 C 1.53092 * 109.25763 * 177.60654 * 19 18 17 21 21 O 1.43021 * 109.26082 * 56.84946 * 20 19 18 22 22 C 1.43016 * 113.73213 * 301.32916 * 21 20 19 23 23 C 1.47013 * 110.99640 * 299.38573 * 18 17 16 24 24 H 1.08996 * 109.47120 * 300.00012 * 1 2 3 25 25 H 1.09004 * 109.46878 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46975 * 60.00108 * 1 2 3 27 27 H 1.09002 * 109.46679 * 120.00228 * 2 1 3 28 28 H 1.08996 * 109.47120 * 239.99988 * 2 1 3 29 29 H 1.08995 * 109.47316 * 210.00002 * 5 4 3 30 30 H 1.09004 * 109.47018 * 330.00035 * 5 4 3 31 31 H 1.09004 * 109.46908 * 300.00565 * 6 5 4 32 32 H 1.09004 * 109.46924 * 60.00096 * 6 5 4 33 33 H 0.96991 * 120.00154 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.50884 * 297.54211 * 19 18 17 35 35 H 1.09000 * 109.51126 * 57.67009 * 19 18 17 36 36 H 1.08995 * 109.51101 * 296.91169 * 20 19 18 37 37 H 1.09006 * 109.54285 * 176.80469 * 20 19 18 38 38 H 1.08993 * 109.50609 * 298.73338 * 22 21 20 39 39 H 1.08999 * 109.53682 * 178.62373 * 22 21 20 40 40 H 1.08987 * 109.51058 * 302.32785 * 23 18 17 41 41 H 1.09000 * 109.50776 * 62.46306 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3189 2.1505 1.0898 5 6 2.2086 1.7352 2.5342 6 6 3.5304 1.1128 2.9883 7 6 3.4199 0.6968 4.4325 8 1 2.4988 0.8597 4.9724 9 6 4.4944 0.1074 5.0643 10 7 5.6159 -0.0914 4.4068 11 14 4.3575 -0.4075 6.8548 12 1 3.0021 -0.0762 7.3629 13 1 4.5841 -1.8707 6.9676 14 1 5.3776 0.3146 7.6568 15 7 2.7176 3.3096 0.6478 16 7 2.6892 3.3249 -0.6370 17 6 2.2725 2.1651 -1.0876 18 7 2.1172 1.8052 -2.4168 19 6 3.4064 1.8284 -3.1230 20 6 3.1989 1.3681 -4.5682 21 8 2.2234 2.2057 -5.1946 22 6 0.9554 2.2064 -4.5331 23 6 1.1402 2.6752 -3.0874 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.9887 2.6088 3.1477 30 1 1.4070 1.0044 2.6419 31 1 3.7504 0.2391 2.3747 32 1 4.3320 1.8436 2.8806 33 1 6.3718 -0.5057 4.8514 34 1 3.8062 2.8425 -3.1178 35 1 4.1066 1.1580 -2.6245 36 1 2.8501 0.3355 -4.5749 37 1 4.1411 1.4375 -5.1119 38 1 0.5414 1.1981 -4.5387 39 1 0.2746 2.8823 -5.0507 40 1 0.1861 2.6230 -2.5632 41 1 1.5036 3.7028 -3.0817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341058737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:40 Heat of formation + Delta-G solvation = 12.125274 kcal Electronic energy + Delta-G solvation = -22446.376708 eV Core-core repulsion = 19168.839519 eV Total energy + Delta-G solvation = -3277.537189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.09824 -40.59280 -37.05911 -36.86276 -35.78486 -33.66410 -32.32633 -31.53165 -30.64270 -28.21615 -26.99561 -25.19210 -25.00166 -23.77023 -22.84916 -21.47540 -21.17127 -18.73010 -18.49698 -17.73731 -17.41512 -16.86813 -16.49767 -16.19846 -15.95383 -15.84099 -15.68580 -15.20792 -14.87503 -14.73611 -14.29315 -14.05903 -13.52255 -13.41441 -13.15643 -12.89503 -12.76076 -12.59478 -12.45581 -12.41708 -12.33342 -12.12690 -11.80630 -11.77150 -11.56583 -11.29882 -11.13767 -10.85082 -10.59039 -10.03994 -10.01248 -8.21421 -6.33800 0.63361 1.16575 1.42682 1.44315 1.56942 1.68587 2.41385 2.49840 2.86824 3.13287 3.41063 3.64475 3.74274 3.77298 3.96855 3.99448 4.05550 4.15427 4.19295 4.25880 4.33962 4.43018 4.58741 4.60835 4.62716 4.68400 4.74440 4.77899 4.86248 4.92247 4.93392 5.13358 5.16097 5.42070 5.44830 5.47779 5.56172 5.77117 6.09482 6.10547 6.15770 6.82216 7.36604 7.62664 8.90974 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.003735 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.412188 B = 7494.678231 C = 7642.348468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.204 3.796 5 C -0.015 4.015 6 C 0.042 3.958 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.968 3.032 12 H -0.256 1.256 13 H -0.277 1.277 14 H -0.284 1.284 15 N -0.335 5.335 16 N -0.347 5.347 17 C 0.334 3.666 18 N -0.448 5.448 19 C 0.025 3.975 20 C 0.075 3.925 21 O -0.398 6.398 22 C 0.072 3.928 23 C 0.029 3.971 24 H 0.053 0.947 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.098 0.902 31 H -0.005 1.005 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 -2.777 -17.623 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 N -0.149 5.149 4 C -0.064 4.064 5 C -0.055 4.055 6 C 0.004 3.996 7 C -0.576 4.576 8 H 0.091 0.909 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.793 3.207 12 H -0.179 1.179 13 H -0.203 1.203 14 H -0.210 1.210 15 N -0.175 5.175 16 N -0.191 5.191 17 C -0.023 4.023 18 N -0.175 5.175 19 C -0.102 4.102 20 C -0.002 4.002 21 O -0.316 6.316 22 C -0.005 4.005 23 C -0.099 4.099 24 H 0.072 0.928 25 H 0.125 0.875 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.014 0.986 32 H 0.000 1.000 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.144 0.856 40 H 0.111 0.889 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.979 -1.822 -17.811 21.542 hybrid contribution 0.532 -0.648 1.383 1.617 sum -11.447 -2.470 -16.428 20.175 Atomic orbital electron populations 1.22054 0.91652 1.04885 1.02496 1.22196 0.97471 0.76936 1.05698 1.46604 1.48562 1.14790 1.04905 1.25424 0.99627 0.88309 0.93076 1.20170 1.00584 1.01746 0.82978 1.18846 0.91165 0.93821 0.95755 1.21610 0.99615 1.39460 0.96886 0.90861 1.25988 0.94794 0.95730 1.03140 1.70124 1.04019 1.44483 1.38849 0.85347 0.78774 0.77800 0.78819 1.17921 1.20310 1.21004 1.73947 1.20650 1.19719 1.03166 1.74396 1.20931 1.19812 1.03965 1.22490 1.02870 0.87790 0.89156 1.59087 1.11765 1.52177 0.94495 1.22960 0.88915 1.01627 0.96743 1.22771 0.93909 0.94598 0.88899 1.87994 1.22564 1.68393 1.52651 1.22830 0.85702 1.03255 0.88674 1.22959 0.95425 0.94527 0.96957 0.92780 0.87530 0.91748 0.88832 0.86923 0.89294 0.88405 0.98631 0.99980 0.92794 0.94070 0.89857 0.90311 0.85938 0.90303 0.85627 0.88880 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.24 71.98 0.74 -2.05 16 2 C 0.10 2.40 6.62 86.38 0.57 2.97 16 3 N -0.46 -15.22 2.81 -514.84 -1.45 -16.67 16 4 C 0.20 8.29 7.32 137.64 1.01 9.30 16 5 C -0.02 -0.62 5.35 29.85 0.16 -0.46 16 6 C 0.04 2.21 4.95 29.85 0.15 2.36 16 7 C -0.54 -29.25 9.11 25.60 0.23 -29.02 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 9 C 0.00 0.08 5.46 84.65 0.46 0.54 16 10 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 11 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 13 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 N -0.33 -15.18 12.18 -49.54 -0.60 -15.78 16 16 N -0.35 -14.38 12.18 -58.00 -0.71 -15.09 16 17 C 0.33 11.26 6.46 260.11 1.68 12.94 16 18 N -0.45 -11.28 4.74 -705.09 -3.34 -14.63 16 19 C 0.03 0.59 5.58 86.31 0.48 1.07 16 20 C 0.08 1.24 7.01 72.01 0.50 1.74 16 21 O -0.40 -7.52 10.83 -148.98 -1.61 -9.14 16 22 C 0.07 1.07 7.01 72.02 0.50 1.57 16 23 C 0.03 0.60 5.56 86.32 0.48 1.08 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 2.50 7.80 -2.39 -0.02 2.48 16 28 H 0.11 2.34 8.14 -2.39 -0.02 2.33 16 29 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 30 H 0.10 3.42 7.88 -2.39 -0.02 3.40 16 31 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 32 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.81 8.13 -2.39 -0.02 1.79 16 41 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.36 341.39 2.57 -70.79 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.00 Total: 9.58 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.97 Total: 2.05 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -5.82 Total: -118.19 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -1.61 Total: -9.14 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.36 2.57 -70.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341058737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.915 kcal (2) G-P(sol) polarization free energy of solvation -73.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds