Wall clock time and date at job start Tue Mar 31 2020 02:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99454 * 2 1 4 4 H 1.48494 * 109.47164 * 269.99766 * 3 2 1 5 5 H 1.48496 * 109.47236 * 30.00343 * 3 2 1 6 6 H 1.48507 * 109.46844 * 149.99679 * 3 2 1 7 7 C 1.37873 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 O 1.20828 * 120.00000 * 359.97438 * 13 12 11 15 15 O 1.34231 * 120.00150 * 180.02562 * 13 12 11 16 16 C 1.45196 * 117.00254 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47375 * 179.97438 * 16 15 13 18 18 C 1.52308 * 115.91246 * 248.17138 * 17 16 15 19 19 C 1.51370 * 60.09744 * 253.80534 * 18 17 16 20 20 H 1.09002 * 115.85137 * 108.01410 * 19 18 17 21 21 C 1.52544 * 117.52882 * 248.65298 * 19 18 17 22 22 C 1.52873 * 110.48131 * 89.29268 * 21 19 18 23 23 C 1.53300 * 108.58184 * 306.53728 * 22 21 19 24 24 C 1.52077 * 114.63828 * 34.40993 * 17 16 15 25 25 H 0.96992 * 120.00516 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 27 27 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 28 28 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 29 29 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 30 30 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 32 32 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 34 34 H 1.09001 * 109.46603 * 299.99750 * 16 15 13 35 35 H 1.08995 * 109.47244 * 59.99281 * 16 15 13 36 36 H 1.08999 * 117.53790 * 0.84676 * 18 17 16 37 37 H 1.08995 * 117.53579 * 146.09468 * 18 17 16 38 38 H 1.08999 * 108.32658 * 329.52061 * 21 19 18 39 39 H 1.09003 * 109.93154 * 210.08267 * 21 19 18 40 40 H 1.09001 * 109.61664 * 186.81477 * 22 21 19 41 41 H 1.09001 * 109.62006 * 66.26503 * 22 21 19 42 42 H 1.08991 * 109.61840 * 314.71756 * 23 22 21 43 43 H 1.09000 * 109.61826 * 194.17111 * 23 22 21 44 44 H 1.08995 * 109.26826 * 285.90443 * 24 17 16 45 45 H 1.09002 * 109.26235 * 45.39922 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6362 0.0012 12 6 6.0618 -4.0787 0.0017 13 6 7.5688 -4.0786 0.0023 14 8 8.1728 -3.0322 0.0018 15 8 8.2401 -5.2410 0.0023 16 6 9.6900 -5.1649 0.0034 17 6 10.2750 -6.5787 0.0039 18 6 10.9991 -6.9990 1.2762 19 6 11.7926 -6.6704 0.0297 20 1 12.3490 -5.7334 0.0537 21 6 12.5140 -7.8181 -0.6697 22 6 11.5997 -8.4725 -1.7055 23 6 10.2868 -8.8663 -1.0188 24 6 9.4642 -7.6005 -0.7779 25 1 -0.4850 0.8399 -0.0004 26 1 3.8745 -0.6806 0.8905 27 1 3.8752 -0.6794 -0.8894 28 1 3.6588 -3.1500 -0.8903 29 1 3.6581 -3.1504 0.8897 30 1 5.9143 -2.1227 0.8916 31 1 5.9158 -2.1221 -0.8884 32 1 5.6978 -4.5924 0.8914 33 1 5.6992 -4.5926 -0.8886 34 1 10.0265 -4.6324 -0.8861 35 1 10.0252 -4.6331 0.8938 36 1 11.0389 -6.2798 2.0943 37 1 10.9317 -8.0459 1.5719 38 1 12.7943 -8.5558 0.0822 39 1 13.4119 -7.4466 -1.1637 40 1 12.0824 -9.3623 -2.1096 41 1 11.3943 -7.7667 -2.5104 42 1 10.5028 -9.3492 -0.0659 43 1 9.7289 -9.5488 -1.6599 44 1 8.5675 -7.8562 -0.2135 45 1 9.1749 -7.1720 -1.7375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345631321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:46 Heat of formation + Delta-G solvation = -105.184064 kcal Electronic energy + Delta-G solvation = -21313.869698 eV Core-core repulsion = 18102.493187 eV Total energy + Delta-G solvation = -3211.376511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82379 -39.92275 -36.64648 -35.09543 -33.86952 -32.63528 -31.40800 -30.35004 -27.76624 -25.89641 -25.05180 -22.62298 -22.20267 -21.24739 -20.35078 -20.08008 -18.61356 -17.50924 -16.92523 -16.68113 -16.58538 -15.47159 -15.01656 -14.67714 -14.32597 -14.28672 -14.18948 -13.82155 -13.50469 -13.12765 -12.69352 -12.58987 -12.43846 -12.24155 -12.15344 -11.78475 -11.60716 -11.37346 -11.23708 -11.15982 -10.87102 -10.79549 -10.67757 -10.58347 -10.51680 -10.20903 -9.88025 -9.81529 -9.68025 -9.52798 -9.13925 -8.50260 -6.01177 -3.98891 2.25690 2.53363 3.33525 3.34455 3.41583 3.46977 4.10387 4.27120 4.36858 4.44781 4.49090 4.64971 4.78419 4.81330 4.87988 5.01316 5.13151 5.15138 5.16882 5.22002 5.28908 5.31673 5.33456 5.42382 5.48321 5.58712 5.66758 5.74204 5.74801 5.80943 5.88202 5.95627 5.98860 6.01457 6.06197 6.32421 6.40835 6.61669 6.75894 6.95437 7.35323 7.48029 7.78641 7.83796 8.57281 9.03768 9.61894 11.12254 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.045352 B = 0.002354 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.239375 B =11893.189356 C =12218.154262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.111 4.111 12 C -0.111 4.111 13 C 0.460 3.540 14 O -0.509 6.509 15 O -0.355 6.355 16 C 0.101 3.899 17 C -0.112 4.112 18 C -0.171 4.171 19 C -0.136 4.136 20 H 0.101 0.899 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.074 4.074 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.785 -18.788 -0.839 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.397 6.397 15 O -0.272 6.272 16 C 0.027 3.973 17 C -0.113 4.113 18 C -0.208 4.208 19 C -0.154 4.154 20 H 0.119 0.881 21 C -0.126 4.126 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.111 4.111 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.850 -18.359 -0.828 31.717 hybrid contribution 0.513 1.131 0.076 1.244 sum 26.364 -17.228 -0.753 31.503 Atomic orbital electron populations 1.69917 1.06290 1.26840 1.51389 1.25047 0.94746 0.99225 0.94624 0.86772 0.80404 0.83575 0.78524 1.20318 1.21444 1.18942 1.21170 0.89595 0.94424 1.50576 0.91040 1.19579 0.97000 0.92348 0.96353 1.21474 0.91096 1.00130 1.01271 1.21605 0.97780 0.92363 1.03138 1.21575 0.85703 1.01921 1.05697 1.24196 0.92244 0.81318 0.71934 1.90665 1.70655 1.33106 1.45238 1.86513 1.21229 1.35227 1.84208 1.22567 0.77109 0.95244 1.02418 1.20945 0.93242 0.95214 1.01851 1.22998 1.03630 1.02754 0.91418 1.21898 0.91817 1.00787 1.00907 0.88069 1.21019 0.97707 0.95953 0.97873 1.21579 0.95902 1.00314 0.98031 1.21646 0.96271 0.97401 1.00749 1.20669 0.97504 0.93263 0.99704 0.92799 0.96595 0.97018 0.92583 0.92567 0.91579 0.91569 0.87738 0.87741 0.90991 0.91202 0.88689 0.88309 0.91611 0.91377 0.91836 0.91574 0.91873 0.91506 0.90707 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.30 13.96 55.43 0.77 -27.52 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 11 C -0.11 -1.82 4.51 -26.73 -0.12 -1.94 16 12 C -0.11 -1.43 5.81 -27.88 -0.16 -1.59 16 13 C 0.46 6.39 7.96 36.01 0.29 6.68 16 14 O -0.51 -8.62 15.73 -18.75 -0.29 -8.91 16 15 O -0.35 -4.30 9.41 -39.26 -0.37 -4.67 16 16 C 0.10 1.05 5.46 37.16 0.20 1.26 16 17 C -0.11 -0.95 2.51 -155.81 -0.39 -1.34 16 18 C -0.17 -1.25 9.17 -27.91 -0.26 -1.51 16 19 C -0.14 -0.96 5.66 -92.15 -0.52 -1.48 16 20 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.09 -0.52 5.86 -27.03 -0.16 -0.68 16 22 C -0.12 -0.72 5.94 -26.64 -0.16 -0.88 16 23 C -0.12 -0.79 5.70 -26.64 -0.15 -0.94 16 24 C -0.07 -0.60 4.75 -27.27 -0.13 -0.73 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.13 8.10 -51.93 -0.42 0.70 16 31 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.07 0.74 7.76 -51.93 -0.40 0.33 16 36 H 0.09 0.68 7.94 -51.93 -0.41 0.27 16 37 H 0.10 0.66 7.28 -51.93 -0.38 0.28 16 38 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.43 8.04 -51.93 -0.42 0.02 16 42 H 0.06 0.39 7.12 -51.93 -0.37 0.02 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -32.34 357.97 -9.65 -41.98 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -8.24 Total: -4.57 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.24 Total: -19.30 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.77 Total: -27.52 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.66 Total: -13.58 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.34 -9.65 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345631321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.201 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds