Wall clock time and date at job start Tue Mar 31 2020 02:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 111.76259 * 2 1 4 4 C 1.56956 * 112.02466 * 126.66236 * 2 1 3 5 5 C 1.55926 * 100.64836 * 170.30714 * 4 2 1 6 6 C 1.54580 * 104.64567 * 326.22133 * 5 4 2 7 7 C 1.55920 * 104.64566 * 0.02562 * 6 5 4 8 8 C 1.50694 * 115.92682 * 160.84126 * 7 6 5 9 9 O 1.20823 * 120.00345 * 242.06639 * 8 7 6 10 10 O 1.34227 * 119.99757 * 62.05735 * 8 7 6 11 11 C 1.45204 * 116.99934 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47189 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47085 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46684 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00165 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99487 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00460 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46579 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47041 * 119.99553 * 18 16 14 21 21 H 1.48497 * 109.47049 * 240.00360 * 18 16 14 22 22 C 1.55932 * 104.49778 * 289.72461 * 7 6 5 23 23 C 1.54580 * 104.64558 * 70.27533 * 22 7 6 24 24 H 1.08997 * 109.47048 * 294.79271 * 1 2 3 25 25 H 1.08999 * 109.46619 * 54.78963 * 1 2 3 26 26 H 1.08997 * 109.46787 * 174.78952 * 1 2 3 27 27 H 1.09009 * 109.47239 * 185.20643 * 3 2 1 28 28 H 1.08999 * 109.47522 * 305.20842 * 3 2 1 29 29 H 1.09005 * 109.47499 * 65.21284 * 3 2 1 30 30 H 1.08995 * 116.86600 * 296.73620 * 4 2 1 31 31 H 1.08997 * 110.40287 * 85.01759 * 5 4 2 32 32 H 1.09002 * 110.40335 * 207.42923 * 5 4 2 33 33 H 1.09009 * 110.40102 * 241.21071 * 6 5 4 34 34 H 1.08998 * 110.40440 * 118.79290 * 6 5 4 35 35 H 1.08996 * 109.47584 * 300.00313 * 11 10 8 36 36 H 1.09005 * 109.46717 * 60.00467 * 11 10 8 37 37 H 1.09005 * 109.47279 * 300.00509 * 12 11 10 38 38 H 1.09005 * 109.46997 * 60.00531 * 12 11 10 39 39 H 1.08993 * 109.47082 * 300.00141 * 13 12 11 40 40 H 1.09005 * 109.46828 * 60.00356 * 13 12 11 41 41 H 0.96998 * 120.00873 * 179.97438 * 17 16 14 42 42 H 1.08995 * 110.40153 * 311.48737 * 22 7 6 43 43 H 1.09000 * 110.49969 * 189.11733 * 22 7 6 44 44 H 1.08999 * 110.40576 * 241.21024 * 23 22 7 45 45 H 1.09002 * 110.50585 * 118.83928 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0973 1.4209 0.0000 4 6 2.1186 -0.8688 1.1672 5 6 3.6270 -0.8970 0.7730 6 6 3.6270 -0.8970 -0.7728 7 6 2.1187 -0.8681 -1.1671 8 6 1.8136 -0.4174 -2.5723 9 8 1.1523 0.5767 -2.7578 10 8 2.2766 -1.1202 -3.6180 11 6 1.9443 -0.6272 -4.9427 12 6 2.5537 -1.5516 -5.9986 13 6 2.2041 -1.0317 -7.3945 14 6 2.8038 -1.9427 -8.4345 15 1 3.3766 -2.8062 -8.1303 16 6 2.6212 -1.6735 -9.7744 17 7 1.9241 -0.6216 -10.1448 18 14 3.3639 -2.8030 -11.0636 19 1 4.0967 -3.9062 -10.3920 20 1 2.2817 -3.3691 -11.9083 21 1 4.3043 -2.0312 -11.9152 22 6 1.5851 -2.2792 -0.7729 23 6 1.5851 -2.2792 0.7729 24 1 -0.3633 0.4309 0.9329 25 1 -0.3632 0.5925 -0.8397 26 1 -0.3633 -1.0234 -0.0933 27 1 3.1825 1.3789 -0.0933 28 1 1.6817 1.9781 -0.8396 29 1 1.8319 1.9182 0.9330 30 1 1.8978 -0.5428 2.1835 31 1 4.1357 -0.0111 1.1530 32 1 4.1022 -1.8014 1.1530 33 1 4.1022 -1.8015 -1.1528 34 1 4.1357 -0.0111 -1.1528 35 1 0.8610 -0.6053 -5.0611 36 1 2.3438 0.3795 -5.0664 37 1 3.6371 -1.5740 -5.8804 38 1 2.1538 -2.5581 -5.8747 39 1 1.1209 -1.0091 -7.5130 40 1 2.6043 -0.0253 -7.5181 41 1 1.7959 -0.4320 -11.0874 42 1 2.2485 -3.0561 -1.1528 43 1 0.5739 -2.4248 -1.1529 44 1 2.2485 -3.0561 1.1530 45 1 0.5743 -2.4235 1.1547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347053324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:17 Heat of formation + Delta-G solvation = -125.162704 kcal Electronic energy + Delta-G solvation = -22686.507624 eV Core-core repulsion = 19474.264774 eV Total energy + Delta-G solvation = -3212.242850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.50680 -40.73282 -37.76769 -35.96663 -33.75012 -32.98712 -32.09670 -31.10458 -28.94226 -27.49530 -25.80653 -25.01461 -23.10267 -23.05951 -22.20715 -20.32850 -19.39481 -18.67678 -18.08026 -17.64239 -17.23006 -16.63268 -16.50264 -15.97615 -15.43995 -15.28634 -14.76742 -14.34625 -13.92060 -13.88147 -13.66823 -13.56704 -13.43539 -13.08081 -12.88510 -12.82985 -12.82266 -12.63004 -12.52271 -12.39409 -12.10905 -12.09203 -11.89243 -11.69267 -11.55893 -11.44925 -11.41141 -11.31733 -11.14696 -10.87179 -10.82245 -10.60216 -8.23750 -6.35709 1.10038 1.40274 1.40769 1.54195 1.62729 2.40038 3.10032 3.15904 3.42717 3.42997 3.73987 3.94117 4.01904 4.11164 4.15957 4.21410 4.34306 4.38969 4.44985 4.47997 4.49421 4.54546 4.57897 4.74949 4.81320 4.85317 4.92339 4.94573 5.02690 5.03672 5.07412 5.13454 5.18556 5.20473 5.24121 5.34351 5.36808 5.44849 5.49531 5.53195 5.56318 5.59732 5.77286 6.16513 6.70680 6.80357 7.34023 8.88772 Molecular weight = 280.18amu Principal moments of inertia in cm(-1) A = 0.035017 B = 0.003105 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.427920 B = 9015.742223 C = 9287.837286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C -0.141 4.141 4 C -0.081 4.081 5 C -0.112 4.112 6 C -0.106 4.106 7 C -0.086 4.086 8 C 0.481 3.519 9 O -0.531 6.531 10 O -0.356 6.356 11 C 0.078 3.922 12 C -0.092 4.092 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.971 3.029 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.278 1.278 22 C -0.106 4.106 23 C -0.112 4.112 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.066 0.934 39 H -0.004 1.004 40 H -0.004 1.004 41 H 0.265 0.735 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -2.401 27.842 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.199 4.199 4 C -0.099 4.099 5 C -0.149 4.149 6 C -0.144 4.144 7 C -0.087 4.087 8 C 0.326 3.674 9 O -0.420 6.420 10 O -0.273 6.273 11 C 0.004 3.996 12 C -0.130 4.130 13 C -0.011 4.011 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.795 3.205 19 H -0.183 1.183 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.144 4.144 23 C -0.149 4.149 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.436 -2.038 27.597 27.709 hybrid contribution -0.120 0.171 -1.762 1.774 sum 1.316 -1.867 25.835 25.936 Atomic orbital electron populations 1.21781 0.94029 1.02114 1.01924 1.22435 0.95237 0.94343 0.92329 1.21783 1.01046 0.95099 1.01924 1.23650 0.94525 0.94012 0.97708 1.22632 0.96397 1.03398 0.92467 1.22626 0.91177 1.02428 0.98144 1.22738 1.00538 0.99777 0.85620 1.23596 0.75373 0.80618 0.87842 1.90609 1.37716 1.26831 1.86889 1.86500 1.70536 1.54295 1.15967 1.23109 1.00033 0.98250 0.78191 1.21447 1.00718 0.98422 0.92373 1.18938 0.95492 0.95636 0.91049 1.21643 1.33472 1.11154 0.91816 0.91643 1.26033 0.95598 0.97018 1.01316 1.70108 1.41457 1.28765 1.17076 0.85314 0.78208 0.78734 0.78283 1.18316 1.20320 1.20330 1.22622 1.00846 0.92797 0.98119 1.22620 1.02511 0.97295 0.92478 0.90516 0.94596 0.91843 0.91861 0.94566 0.90534 0.85439 0.90423 0.89424 0.90335 0.92396 0.92231 0.92224 0.91514 0.91508 0.98568 0.98561 0.92641 0.90360 0.92387 0.89446 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.35 71.98 0.60 -2.19 16 2 C -0.04 -0.81 0.57 -49.42 -0.03 -0.84 16 3 C -0.14 -2.80 8.34 71.98 0.60 -2.19 16 4 C -0.08 -0.95 4.51 -7.40 -0.03 -0.99 16 5 C -0.11 -1.33 5.55 32.15 0.18 -1.15 16 6 C -0.11 -1.97 5.20 32.14 0.17 -1.80 16 7 C -0.09 -1.96 0.84 -49.53 -0.04 -2.00 16 8 C 0.48 15.67 7.14 71.23 0.51 16.17 16 9 O -0.53 -20.05 13.98 21.97 0.31 -19.74 16 10 O -0.36 -12.62 10.22 -51.38 -0.53 -13.15 16 11 C 0.08 3.07 5.47 71.98 0.39 3.46 16 12 C -0.09 -3.97 5.53 30.60 0.17 -3.80 16 13 C 0.03 1.41 4.97 29.85 0.15 1.55 16 14 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 17 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 18 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 C -0.11 -1.97 5.20 32.15 0.17 -1.80 16 23 C -0.11 -1.33 5.54 32.12 0.18 -1.15 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.03 0.93 7.15 -2.39 -0.02 0.91 16 26 H 0.06 1.17 5.43 -2.39 -0.01 1.16 16 27 H 0.06 1.17 5.42 -2.38 -0.01 1.15 16 28 H 0.04 0.94 7.12 -2.39 -0.02 0.92 16 29 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 0.82 7.52 -2.39 -0.02 0.80 16 32 H 0.09 0.78 7.84 -2.39 -0.02 0.77 16 33 H 0.08 1.42 7.84 -2.38 -0.02 1.40 16 34 H 0.06 1.19 7.29 -2.39 -0.02 1.17 16 35 H 0.06 2.40 8.13 -2.39 -0.02 2.38 16 36 H 0.06 2.40 8.13 -2.38 -0.02 2.38 16 37 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 39 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 40 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 41 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.08 1.42 7.83 -2.39 -0.02 1.40 16 43 H 0.06 1.19 7.29 -2.39 -0.02 1.17 16 44 H 0.09 0.78 7.84 -2.39 -0.02 0.76 16 45 H 0.08 0.82 7.53 -2.39 -0.02 0.80 16 Total: -1.00 -68.16 345.52 6.74 -61.42 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.95 Total: 9.59 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 3.70 Total: -27.35 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.22 Total: -32.89 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.16 6.74 -61.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347053324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.744 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds