Wall clock time and date at job start Tue Mar 31 2020 01:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47541 * 2 1 4 4 C 1.35406 * 126.43859 * 265.17033 * 3 2 1 5 5 C 1.35566 * 107.15595 * 180.21797 * 4 3 2 6 6 N 1.33101 * 108.35120 * 359.76817 * 5 4 3 7 7 C 1.31605 * 109.09474 * 0.02562 * 6 5 4 8 8 C 1.47416 * 125.86137 * 179.97438 * 7 6 5 9 9 O 1.21604 * 119.99977 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99992 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00256 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46596 * 325.00243 * 11 10 8 13 13 C 1.53006 * 109.47249 * 84.99846 * 11 10 8 14 14 C 1.52997 * 109.47473 * 205.00145 * 11 10 8 15 15 C 1.53001 * 109.47049 * 64.99864 * 14 11 10 16 16 N 1.46496 * 109.46907 * 180.02562 * 15 14 11 17 17 C 1.36940 * 119.99895 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99861 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00211 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99686 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00151 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46984 * 60.00187 * 21 19 17 23 23 H 1.48501 * 109.46857 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46955 * 300.00272 * 21 19 17 25 25 H 1.09001 * 109.47572 * 59.99994 * 1 2 3 26 26 H 1.09006 * 109.47383 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46958 * 299.99953 * 1 2 3 28 28 H 1.09007 * 109.46958 * 240.00046 * 2 1 3 29 29 H 1.09005 * 109.47198 * 120.00346 * 2 1 3 30 30 H 1.07994 * 126.41754 * 359.96807 * 4 3 2 31 31 H 1.08003 * 125.82154 * 179.77530 * 5 4 3 32 32 H 0.97005 * 120.00370 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 34 34 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 36 36 H 1.08998 * 109.47192 * 185.00019 * 14 11 10 37 37 H 1.08998 * 109.46934 * 304.99865 * 14 11 10 38 38 H 1.08998 * 109.47250 * 300.00119 * 15 14 11 39 39 H 1.08998 * 109.47252 * 60.00195 * 15 14 11 40 40 H 0.97002 * 120.00674 * 0.02562 * 16 15 14 41 41 H 0.97001 * 119.99967 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3730 2.1088 -1.0855 5 6 2.7687 3.3262 -0.6390 6 7 2.6538 3.3438 0.6870 7 6 2.1991 2.1783 1.0953 8 6 1.9350 1.7964 2.4944 9 8 1.5139 0.6851 2.7522 10 7 2.1602 2.6788 3.4878 11 6 1.8983 2.2992 4.8783 12 1 1.0309 1.6401 4.9177 13 6 3.1181 1.5712 5.4467 14 6 1.6223 3.5555 5.7068 15 6 0.3317 4.2157 5.2175 16 7 0.0678 5.4189 6.0104 17 6 -1.0407 6.1800 5.7514 18 1 -1.7207 5.8930 4.9630 19 6 -1.2911 7.3199 6.5031 20 7 -0.4627 7.6694 7.4643 21 14 -2.8037 8.3577 6.1503 22 1 -4.0242 7.5320 6.3335 23 1 -2.8412 9.5115 7.0845 24 1 -2.7477 8.8550 4.7521 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.3492 1.7796 -2.1137 31 1 3.1175 4.1424 -1.2543 32 1 2.4957 3.5655 3.2822 33 1 3.9855 2.2301 5.4072 34 1 2.9230 1.2883 6.4810 35 1 3.3147 0.6761 4.8564 36 1 1.5153 3.2822 6.7565 37 1 2.4522 4.2534 5.5958 38 1 0.4387 4.4890 4.1678 39 1 -0.4982 3.5178 5.3285 40 1 0.6787 5.6770 6.7183 41 1 -0.6378 8.4658 7.9898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482827421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:48 Heat of formation + Delta-G solvation = 27.101140 kcal Electronic energy + Delta-G solvation = -21802.686098 eV Core-core repulsion = 18525.798311 eV Total energy + Delta-G solvation = -3276.887786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.41833 -39.49473 -36.56532 -35.25323 -34.26200 -32.04619 -30.91756 -30.39699 -29.39128 -27.83640 -24.61670 -23.98861 -23.25469 -21.74521 -21.36040 -20.49220 -20.04056 -17.95861 -17.00835 -16.57292 -15.96602 -15.91190 -14.93512 -14.73494 -14.40291 -14.21486 -14.05553 -13.74313 -13.65586 -13.41685 -13.27870 -12.87830 -12.79774 -12.38927 -12.33169 -11.84817 -11.62089 -11.17636 -10.98017 -10.74998 -10.61796 -10.54805 -10.33541 -10.13590 -10.02782 -9.96098 -9.65235 -9.09504 -8.81714 -8.65166 -6.87348 -5.71917 -3.00332 1.27298 2.28688 2.51052 3.26247 3.39712 3.48059 3.51800 3.53278 4.27675 4.38495 4.58172 4.62521 4.72208 4.96686 4.97361 5.11464 5.23400 5.25143 5.37407 5.37752 5.48066 5.59829 5.74465 5.78373 5.84762 5.95500 6.00184 6.06029 6.27258 6.31049 6.37770 6.43845 6.53185 6.74836 6.87524 6.91315 7.42015 7.74499 7.77983 8.15698 8.47316 9.58224 10.16131 10.51052 11.51089 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017701 B = 0.003782 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.412432 B = 7402.438566 C = 8094.178594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.415 5.415 4 C -0.034 4.034 5 C -0.027 4.027 6 N -0.443 5.443 7 C 0.143 3.857 8 C 0.608 3.392 9 O -0.546 6.546 10 N -0.691 5.691 11 C 0.146 3.854 12 H 0.091 0.909 13 C -0.161 4.161 14 C -0.135 4.135 15 C 0.153 3.847 16 N -0.733 5.733 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.414 0.586 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -16.599 -16.032 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.096 5.096 4 C -0.172 4.172 5 C -0.181 4.181 6 N -0.164 5.164 7 C -0.117 4.117 8 C 0.391 3.609 9 O -0.423 6.423 10 N -0.342 5.342 11 C 0.042 3.958 12 H 0.109 0.891 13 C -0.219 4.219 14 C -0.173 4.173 15 C 0.025 3.975 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.128 0.872 30 H 0.198 0.802 31 H 0.194 0.806 32 H 0.250 0.750 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.140 -16.861 -15.292 24.175 hybrid contribution -0.674 0.569 -0.809 1.197 sum 7.466 -16.292 -16.101 24.092 Atomic orbital electron populations 1.22075 0.93471 1.03379 1.03247 1.22111 0.96435 0.78801 1.05151 1.45288 1.45273 1.12851 1.06141 1.22899 1.07121 0.94160 0.93018 1.22441 1.07105 0.97477 0.91036 1.70238 1.15098 1.18406 1.12693 1.22732 1.10085 0.88483 0.90390 1.16437 0.77821 0.84635 0.81967 1.90772 1.47060 1.20826 1.83676 1.45824 1.65216 1.17188 1.06004 1.21080 0.98537 0.97152 0.79040 0.89102 1.22169 0.98010 1.00479 1.01272 1.22072 0.99912 0.95484 0.99870 1.20644 0.93044 0.89100 0.94676 1.42344 1.28826 1.26048 1.40534 1.19191 1.00443 1.03612 1.13720 0.91340 1.24728 0.98956 0.98735 0.98565 1.69650 1.37857 1.27174 1.23688 0.86265 0.82742 0.79869 0.77322 1.21301 1.21662 1.21263 0.92290 0.90378 0.91091 0.89157 0.87228 0.80181 0.80567 0.74965 0.92304 0.91288 0.92448 0.90015 0.91110 0.96181 0.96489 0.78300 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.23 37.15 0.38 -1.03 16 2 C 0.10 0.83 6.18 -4.05 -0.02 0.81 16 3 N -0.41 -4.60 2.76 -114.59 -0.32 -4.92 16 4 C -0.03 -0.31 11.53 -16.93 -0.20 -0.51 16 5 C -0.03 -0.30 11.85 -17.96 -0.21 -0.51 16 6 N -0.44 -6.32 10.89 -11.26 -0.12 -6.45 16 7 C 0.14 1.99 7.78 -154.53 -1.20 0.79 16 8 C 0.61 9.02 7.78 -12.53 -0.10 8.92 16 9 O -0.55 -8.63 14.16 5.27 0.07 -8.55 16 10 N -0.69 -9.86 4.53 -54.88 -0.25 -10.11 16 11 C 0.15 2.03 2.57 -67.93 -0.17 1.86 16 12 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 13 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 14 C -0.14 -2.15 4.87 -26.73 -0.13 -2.28 16 15 C 0.15 3.18 6.15 -4.04 -0.02 3.15 16 16 N -0.73 -19.13 5.60 -59.91 -0.34 -19.47 16 17 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 21 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 28 H 0.09 0.50 8.13 -51.93 -0.42 0.07 16 29 H 0.11 1.08 6.64 -51.93 -0.34 0.74 16 30 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.18 1.45 8.06 -52.48 -0.42 1.02 16 32 H 0.41 5.91 8.28 -40.82 -0.34 5.57 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.43 7.75 -51.93 -0.40 0.03 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.38 10.37 7.67 -40.82 -0.31 10.05 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -34.09 347.08 -7.99 -42.08 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.40 Total: 10.22 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.58 Total: 2.09 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -0.30 Total: -68.98 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.09 -7.99 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482827421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.183 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds