Wall clock time and date at job start Tue Mar 31 2020 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46978 * 2 1 4 4 C 1.36933 * 120.00383 * 84.35654 * 3 2 1 5 5 H 1.07997 * 120.00001 * 33.50772 * 4 3 2 6 6 C 1.38806 * 119.99902 * 213.23208 * 4 3 2 7 7 N 1.31618 * 120.00511 * 18.76025 * 6 4 3 8 8 Si 1.86808 * 119.99915 * 198.75272 * 6 4 3 9 9 H 1.48504 * 109.46781 * 60.00524 * 8 6 4 10 10 H 1.48501 * 109.46769 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47264 * 300.00335 * 8 6 4 12 12 C 1.46502 * 119.99534 * 264.35874 * 3 2 1 13 13 H 1.09004 * 109.47122 * 174.45722 * 12 3 2 14 14 C 1.52995 * 109.47540 * 54.45146 * 12 3 2 15 15 C 1.50703 * 109.46937 * 294.44796 * 12 3 2 16 16 N 1.32167 * 119.91080 * 45.00674 * 15 12 3 17 17 C 1.33094 * 120.08642 * 179.97438 * 16 15 12 18 18 N 1.38001 * 120.04034 * 180.02562 * 17 16 15 19 19 N 1.32867 * 119.91526 * 359.97438 * 17 16 15 20 20 C 1.32840 * 119.82393 * 0.02562 * 19 17 16 21 21 N 1.37992 * 120.04137 * 180.02562 * 20 19 17 22 22 C 1.46493 * 120.00357 * 0.02562 * 21 20 19 23 23 C 1.46500 * 119.99675 * 179.97438 * 21 20 19 24 24 N 1.32129 * 119.91391 * 224.72521 * 15 12 3 25 25 H 1.09001 * 109.47638 * 300.00045 * 1 2 3 26 26 H 1.08998 * 109.47323 * 60.00564 * 1 2 3 27 27 H 1.09006 * 109.47377 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47252 * 239.99339 * 2 1 3 29 29 H 1.09005 * 109.46712 * 119.99638 * 2 1 3 30 30 H 0.97000 * 120.00870 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47020 * 179.97438 * 14 12 3 32 32 H 1.09004 * 109.47167 * 299.99908 * 14 12 3 33 33 H 1.09006 * 109.46822 * 60.00118 * 14 12 3 34 34 H 0.96999 * 120.00403 * 0.02562 * 18 17 16 35 35 H 0.97003 * 119.99862 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47160 * 89.99613 * 22 21 20 37 37 H 1.08998 * 109.47359 * 210.00092 * 22 21 20 38 38 H 1.09000 * 109.46741 * 329.99559 * 22 21 20 39 39 H 1.09000 * 109.47445 * 0.02562 * 23 21 20 40 40 H 1.09003 * 109.47085 * 119.99714 * 23 21 20 41 41 H 1.08997 * 109.47470 * 239.99728 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1366 2.0657 1.1801 5 1 2.4064 1.5404 2.0843 6 6 1.9153 3.4356 1.2130 7 7 1.2483 4.0182 0.2393 8 14 2.5638 4.4524 2.6396 9 1 4.0420 4.3262 2.7056 10 1 2.1967 5.8773 2.4389 11 1 1.9679 3.9621 3.9083 12 6 2.3800 2.0302 -1.2627 13 1 2.6244 3.0760 -1.0767 14 6 1.2016 1.9469 -2.2349 15 6 3.5751 1.3338 -1.8610 16 7 3.6194 0.0134 -1.8958 17 6 4.6729 -0.6052 -2.4238 18 7 4.7179 -1.9840 -2.4602 19 7 5.6807 0.1065 -2.9169 20 6 5.6326 1.4335 -2.8801 21 7 6.6766 2.1771 -3.3914 22 6 7.8387 1.5031 -3.9757 23 6 6.6223 3.6405 -3.3509 24 7 4.5733 2.0450 -2.3544 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.0940 4.9755 0.2621 31 1 1.4706 2.4301 -3.1741 32 1 0.9572 0.9010 -2.4209 33 1 0.3372 2.4506 -1.8020 34 1 3.9813 -2.5030 -2.1010 35 1 5.4862 -2.4342 -2.8448 36 1 7.6696 1.3453 -5.0408 37 1 8.7254 2.1215 -3.8363 38 1 7.9857 0.5412 -3.4846 39 1 5.6893 3.9567 -2.8843 40 1 7.4643 4.0194 -2.7716 41 1 6.6730 4.0343 -4.3660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559512621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:47 Heat of formation + Delta-G solvation = 110.728554 kcal Electronic energy + Delta-G solvation = -23147.155642 eV Core-core repulsion = 19906.186964 eV Total energy + Delta-G solvation = -3240.968678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.171 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85294 -37.17583 -36.45855 -34.73325 -32.52648 -31.69478 -31.03620 -30.13459 -28.18503 -27.91908 -25.88681 -24.29185 -23.40519 -22.10159 -21.14494 -19.54959 -18.54218 -17.41597 -16.48460 -15.79945 -15.57706 -15.46233 -14.66701 -14.29690 -14.21271 -13.87707 -13.60294 -13.39445 -13.03820 -12.45288 -12.26179 -12.12885 -11.84931 -11.82996 -11.64143 -11.37404 -11.30095 -11.01703 -10.80922 -10.47899 -10.28238 -10.22491 -9.85485 -9.62794 -9.56850 -8.78928 -8.62651 -8.54965 -8.36328 -7.90714 -6.59257 -5.79815 -3.24791 1.88569 2.00810 2.83204 3.41573 3.46857 3.49866 3.56067 4.47390 4.61672 4.67932 4.86622 5.28244 5.34694 5.43302 5.46513 5.63903 5.67501 5.72395 5.83559 6.06712 6.39260 6.46824 6.51848 6.64357 6.73454 6.76590 6.79614 6.82254 7.01075 7.03655 7.22253 7.26001 7.42609 7.47691 7.56306 7.69631 7.84973 7.88523 8.08861 8.54824 9.20076 9.29104 9.87338 10.44734 11.27477 Molecular weight = 280.17amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.006899 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.641888 B = 4057.815236 C = 5157.481058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 N -0.565 5.565 4 C -0.259 4.259 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.282 1.282 12 C 0.244 3.756 13 H 0.127 0.873 14 C -0.134 4.134 15 C 0.431 3.569 16 N -0.619 5.619 17 C 0.614 3.386 18 N -0.817 5.817 19 N -0.670 5.670 20 C 0.617 3.383 21 N -0.589 5.589 22 C 0.106 3.894 23 C 0.096 3.904 24 N -0.631 5.631 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.027 0.973 30 H 0.256 0.744 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.408 0.592 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.506 -6.373 -8.728 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.284 5.284 4 C -0.389 4.389 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.215 1.215 11 H -0.209 1.209 12 C 0.133 3.867 13 H 0.144 0.856 14 C -0.194 4.194 15 C 0.154 3.846 16 N -0.353 5.353 17 C 0.247 3.753 18 N -0.367 5.367 19 N -0.411 5.411 20 C 0.253 3.747 21 N -0.308 5.308 22 C -0.037 4.037 23 C -0.047 4.047 24 N -0.365 5.365 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.245 0.755 35 H 0.238 0.762 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.583 -6.059 -8.788 13.697 hybrid contribution 0.589 0.128 0.709 0.930 sum 9.172 -5.931 -8.079 13.586 Atomic orbital electron populations 1.22366 1.00081 0.98046 1.01811 1.21090 0.91249 0.86832 0.99941 1.43708 1.72008 1.10593 1.02101 1.19064 1.41368 0.90661 0.87770 0.92084 1.25093 0.97748 0.98259 0.97566 1.69958 1.39282 1.10278 1.33636 0.86454 0.79105 0.79324 0.82381 1.21102 1.21507 1.20856 1.19331 0.84823 0.97621 0.84889 0.85561 1.22055 1.00060 0.99949 0.97337 1.25513 0.93058 0.84918 0.81100 1.68644 1.26473 1.12558 1.27599 1.19281 0.84764 0.87114 0.84124 1.41555 1.25745 1.01143 1.68233 1.67723 1.32176 1.06847 1.34334 1.19050 0.86323 0.84483 0.84886 1.45713 1.16978 1.05559 1.62587 1.21518 0.86142 0.98390 0.97649 1.21710 1.04412 0.77371 1.01188 1.68556 1.03743 1.41220 1.22943 0.93249 0.93319 0.95488 0.90626 0.95447 0.93363 0.94928 0.94115 0.90201 0.75472 0.76188 0.93463 0.91701 0.90411 0.88166 0.92766 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 9.99 37.16 0.37 -2.99 16 2 C 0.13 2.98 5.27 -4.04 -0.02 2.95 16 3 N -0.56 -14.18 2.36 -166.98 -0.39 -14.57 16 4 C -0.26 -7.10 9.52 -15.06 -0.14 -7.25 16 5 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 6 C 0.01 0.37 4.84 -17.43 -0.08 0.28 16 7 N -0.89 -24.66 11.32 55.49 0.63 -24.03 16 8 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 C 0.24 5.89 2.30 -69.08 -0.16 5.73 16 13 H 0.13 3.45 5.79 -51.93 -0.30 3.15 16 14 C -0.13 -2.95 8.02 37.16 0.30 -2.65 16 15 C 0.43 9.78 6.63 -156.58 -1.04 8.74 16 16 N -0.62 -12.80 7.59 -11.52 -0.09 -12.89 16 17 C 0.61 11.18 8.76 -322.13 -2.82 8.35 16 18 N -0.82 -10.45 9.05 29.85 0.27 -10.18 16 19 N -0.67 -12.32 9.29 -14.75 -0.14 -12.46 16 20 C 0.62 11.94 8.19 -322.13 -2.64 9.31 16 21 N -0.59 -9.15 3.36 -191.76 -0.64 -9.79 16 22 C 0.11 1.23 10.50 59.84 0.63 1.86 16 23 C 0.10 1.28 10.71 59.85 0.64 1.92 16 24 N -0.63 -13.76 8.90 -11.52 -0.10 -13.86 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 1.01 6.07 -51.93 -0.32 0.70 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.60 5.38 -51.93 -0.28 1.32 16 29 H 0.03 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.84 6.62 -51.93 -0.34 0.50 16 33 H 0.08 1.89 7.87 -51.93 -0.41 1.48 16 34 H 0.41 4.61 8.95 -40.82 -0.37 4.25 16 35 H 0.41 4.14 8.95 -40.82 -0.37 3.78 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.08 0.96 7.37 -51.93 -0.38 0.58 16 39 H 0.10 1.60 6.80 -51.93 -0.35 1.24 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -31.22 332.53 -11.49 -42.71 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.04 Total: 7.13 kcal Atomic # 6 Polarization: 31.23 SS G_CDS: -4.97 Total: 26.27 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -0.47 Total: -97.78 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.22 -11.49 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559512621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.441 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds